HEADER VIRAL PROTEIN 21-DEC-10 3Q3A TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NORWALK VIRUS STRAIN VIETNAM 026 IN TITLE 2 COMPLEX WITH HBGA TYPE H2 (TRIGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 224-538; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 STRAIN: VIETNAM 026; SOURCE 5 GENE: CAPSID PROTEIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS NOROVIRUS, P-DOMAIN, CAPSID, RECEPTOR, HISTO BLOOD GROUP ANTIGEN KEYWDS 2 (HBGA), VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.HANSMAN,C.BIERTUMPFEL,L.CHEN,I.GEORGIEV,J.S.MCLELLAN,K.KATAYAMA, AUTHOR 2 P.D.KWONG REVDAT 3 29-JUL-20 3Q3A 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 02-NOV-11 3Q3A 1 JRNL VERSN REVDAT 1 11-MAY-11 3Q3A 0 JRNL AUTH G.S.HANSMAN,C.BIERTUMPFEL,I.GEORGIEV,J.S.MCLELLAN,L.CHEN, JRNL AUTH 2 T.ZHOU,K.KATAYAMA,P.D.KWONG JRNL TITL CRYSTAL STRUCTURES OF GII.10 AND GII.12 NOROVIRUS PROTRUDING JRNL TITL 2 DOMAINS IN COMPLEX WITH HISTO-BLOOD GROUP ANTIGENS REVEAL JRNL TITL 3 DETAILS FOR A POTENTIAL SITE OF VULNERABILITY. JRNL REF J.VIROL. V. 85 6687 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21525337 JRNL DOI 10.1128/JVI.00246-11 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 135108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 6863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1769 - 4.3450 0.99 4386 210 0.1610 0.1704 REMARK 3 2 4.3450 - 3.4507 1.00 4305 240 0.1469 0.1544 REMARK 3 3 3.4507 - 3.0151 1.00 4326 217 0.1619 0.1979 REMARK 3 4 3.0151 - 2.7397 1.00 4309 214 0.1654 0.1797 REMARK 3 5 2.7397 - 2.5435 1.00 4276 220 0.1681 0.1866 REMARK 3 6 2.5435 - 2.3936 1.00 4326 213 0.1577 0.1682 REMARK 3 7 2.3936 - 2.2738 1.00 4257 262 0.1513 0.1660 REMARK 3 8 2.2738 - 2.1748 1.00 4251 241 0.1586 0.1736 REMARK 3 9 2.1748 - 2.0911 1.00 4281 219 0.1591 0.1806 REMARK 3 10 2.0911 - 2.0190 1.00 4311 208 0.1563 0.1732 REMARK 3 11 2.0190 - 1.9559 1.00 4307 220 0.1561 0.1879 REMARK 3 12 1.9559 - 1.9000 1.00 4230 245 0.1564 0.1707 REMARK 3 13 1.9000 - 1.8500 1.00 4270 233 0.1588 0.1941 REMARK 3 14 1.8500 - 1.8048 1.00 4274 228 0.1563 0.1630 REMARK 3 15 1.8048 - 1.7638 1.00 4292 224 0.1635 0.1955 REMARK 3 16 1.7638 - 1.7263 1.00 4281 211 0.1711 0.2134 REMARK 3 17 1.7263 - 1.6918 1.00 4271 221 0.1738 0.1848 REMARK 3 18 1.6918 - 1.6598 1.00 4291 230 0.1772 0.1869 REMARK 3 19 1.6598 - 1.6302 1.00 4251 241 0.1849 0.2072 REMARK 3 20 1.6302 - 1.6026 1.00 4247 232 0.1958 0.2313 REMARK 3 21 1.6026 - 1.5767 1.00 4289 222 0.1936 0.2458 REMARK 3 22 1.5767 - 1.5525 1.00 4263 228 0.2018 0.2237 REMARK 3 23 1.5525 - 1.5296 1.00 4273 216 0.2126 0.2339 REMARK 3 24 1.5296 - 1.5081 1.00 4298 224 0.2186 0.2448 REMARK 3 25 1.5081 - 1.4877 1.00 4205 255 0.2277 0.2449 REMARK 3 26 1.4877 - 1.4684 1.00 4262 237 0.2339 0.2645 REMARK 3 27 1.4684 - 1.4500 1.00 4268 238 0.2437 0.2633 REMARK 3 28 1.4500 - 1.4326 1.00 4276 219 0.2552 0.2787 REMARK 3 29 1.4326 - 1.4159 1.00 4207 250 0.2576 0.2803 REMARK 3 30 1.4159 - 1.4000 1.00 4264 245 0.2714 0.3076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 46.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10270 REMARK 3 B22 (A**2) : -1.35170 REMARK 3 B33 (A**2) : 1.45440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.72160 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5155 REMARK 3 ANGLE : 1.244 7015 REMARK 3 CHIRALITY : 0.087 781 REMARK 3 PLANARITY : 0.007 922 REMARK 3 DIHEDRAL : 15.061 1856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 224:307) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4523 8.2861 10.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: 0.0269 REMARK 3 T33: 0.0070 T12: -0.0066 REMARK 3 T13: 0.0095 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1304 L22: 0.2628 REMARK 3 L33: 0.3246 L12: -0.0550 REMARK 3 L13: 0.1254 L23: 0.0239 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.0544 S13: 0.0189 REMARK 3 S21: -0.0599 S22: 0.0214 S23: 0.0296 REMARK 3 S31: -0.0959 S32: 0.0667 S33: -0.0139 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 308:432) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9116 14.2810 19.2908 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.0552 REMARK 3 T33: 0.0636 T12: 0.0106 REMARK 3 T13: 0.0055 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5038 L22: 0.8516 REMARK 3 L33: 0.7939 L12: 0.0588 REMARK 3 L13: -0.0484 L23: -0.3620 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0291 S13: 0.0649 REMARK 3 S21: 0.0876 S22: 0.0541 S23: 0.0245 REMARK 3 S31: -0.2025 S32: -0.0261 S33: -0.0374 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 433:538) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9142 -1.3125 -4.4304 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.1024 REMARK 3 T33: -0.0434 T12: -0.0229 REMARK 3 T13: 0.0381 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.5041 L22: 0.7092 REMARK 3 L33: 0.0377 L12: 0.1288 REMARK 3 L13: 0.1222 L23: 0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.1655 S13: -0.0513 REMARK 3 S21: -0.3073 S22: 0.0700 S23: 0.0013 REMARK 3 S31: -0.0534 S32: 0.0472 S33: -0.0262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 224:300) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1970 -5.1206 23.5308 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0299 REMARK 3 T33: 0.0790 T12: -0.0001 REMARK 3 T13: -0.0186 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.3742 L22: 0.4904 REMARK 3 L33: 0.2367 L12: 0.1788 REMARK 3 L13: 0.2914 L23: 0.0958 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.0735 S13: -0.0944 REMARK 3 S21: 0.0478 S22: 0.0138 S23: -0.1474 REMARK 3 S31: 0.0305 S32: 0.0724 S33: -0.0482 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 301:434) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4241 -11.8426 27.2449 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: 0.0067 REMARK 3 T33: 0.0604 T12: -0.0048 REMARK 3 T13: -0.0232 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.6303 L22: 0.5833 REMARK 3 L33: 0.4957 L12: -0.1557 REMARK 3 L13: 0.2666 L23: -0.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0375 S13: -0.1913 REMARK 3 S21: 0.0619 S22: 0.0419 S23: -0.0070 REMARK 3 S31: 0.0983 S32: -0.0411 S33: -0.0782 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 435:538) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9276 3.1929 22.4811 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.1465 REMARK 3 T33: 0.2353 T12: -0.0078 REMARK 3 T13: -0.0156 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 0.1793 L22: 1.0393 REMARK 3 L33: 0.6676 L12: 0.2849 REMARK 3 L13: 0.3189 L23: 0.2506 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.1400 S13: -0.1673 REMARK 3 S21: 0.0379 S22: 0.0828 S23: -0.4318 REMARK 3 S31: -0.0346 S32: 0.1722 S33: -0.0941 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN L) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4618 4.8950 39.9479 REMARK 3 T TENSOR REMARK 3 T11: 0.1803 T22: 0.2085 REMARK 3 T33: 0.1482 T12: -0.0534 REMARK 3 T13: -0.0234 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 0.8657 L22: 1.1258 REMARK 3 L33: 0.1981 L12: 0.9540 REMARK 3 L13: 0.2737 L23: 0.2106 REMARK 3 S TENSOR REMARK 3 S11: 0.2031 S12: -0.2264 S13: -0.0588 REMARK 3 S21: 0.1048 S22: 0.0752 S23: 0.0739 REMARK 3 S31: 0.2190 S32: -0.5021 S33: -0.2779 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.171 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 21.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.69 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67200 REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (2.1.4) REMARK 200 STARTING MODEL: PDB ENTRY 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 8.25% (W/V) PEG 8000, REMARK 280 1% (V/V) MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.55200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT IS ALSO BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 220 REMARK 465 PRO A 221 REMARK 465 GLY A 222 REMARK 465 SER A 223 REMARK 465 GLY B 220 REMARK 465 PRO B 221 REMARK 465 GLY B 222 REMARK 465 SER B 223 REMARK 465 VAL B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 465 GLY B 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 345 OG1 CG2 REMARK 470 ASN B 351 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 341 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 252 76.06 -156.40 REMARK 500 GLN A 260 48.31 -149.60 REMARK 500 THR A 291 -69.22 -92.85 REMARK 500 GLN A 384 -20.95 -148.42 REMARK 500 VAL A 529 -150.30 -121.89 REMARK 500 ASN B 252 76.61 -151.96 REMARK 500 GLN B 260 46.60 -149.83 REMARK 500 ALA B 323 170.72 179.34 REMARK 500 GLN B 384 -30.72 -139.27 REMARK 500 VAL B 529 -158.77 -129.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R6J RELATED DB: PDB REMARK 900 RELATED ID: 3R6K RELATED DB: PDB REMARK 900 RELATED ID: 3PA1 RELATED DB: PDB REMARK 900 RELATED ID: 3PA2 RELATED DB: PDB REMARK 900 RELATED ID: 3Q38 RELATED DB: PDB REMARK 900 RELATED ID: 3Q39 RELATED DB: PDB REMARK 900 RELATED ID: 3Q6Q RELATED DB: PDB REMARK 900 RELATED ID: 3Q6R RELATED DB: PDB REMARK 900 RELATED ID: 3ONY RELATED DB: PDB REMARK 900 RELATED ID: 3ONU RELATED DB: PDB DBREF 3Q3A A 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 DBREF 3Q3A B 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 SEQADV 3Q3A GLY A 220 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A PRO A 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A GLY A 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A SER A 223 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A GLY B 220 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A PRO B 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A GLY B 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A SER B 223 UNP Q5F4T5 EXPRESSION TAG SEQRES 1 A 319 GLY PRO GLY SER SER LYS PRO PHE THR LEU PRO ILE LEU SEQRES 2 A 319 THR LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO SEQRES 3 A 319 ILE ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE SEQRES 4 A 319 VAL GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU SEQRES 5 A 319 LEU GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS SEQRES 6 A 319 ALA PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU SEQRES 7 A 319 HIS ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU SEQRES 8 A 319 ASN GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA SEQRES 9 A 319 PRO LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY SEQRES 10 A 319 VAL ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU SEQRES 11 A 319 GLY ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE SEQRES 12 A 319 ALA THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN SEQRES 13 A 319 ILE GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER SEQRES 14 A 319 GLY GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER SEQRES 15 A 319 VAL ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SEQRES 16 A 319 SER TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA SEQRES 17 A 319 PRO SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU SEQRES 18 A 319 PHE PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY SEQRES 19 A 319 ASN PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL SEQRES 20 A 319 GLN HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP SEQRES 21 A 319 VAL ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG SEQRES 22 A 319 THR LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU SEQRES 23 A 319 THR VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO SEQRES 24 A 319 THR ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 25 A 319 PHE TYR THR LEU ALA PRO MET SEQRES 1 B 319 GLY PRO GLY SER SER LYS PRO PHE THR LEU PRO ILE LEU SEQRES 2 B 319 THR LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO SEQRES 3 B 319 ILE ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE SEQRES 4 B 319 VAL GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU SEQRES 5 B 319 LEU GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS SEQRES 6 B 319 ALA PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU SEQRES 7 B 319 HIS ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU SEQRES 8 B 319 ASN GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA SEQRES 9 B 319 PRO LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY SEQRES 10 B 319 VAL ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU SEQRES 11 B 319 GLY ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE SEQRES 12 B 319 ALA THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN SEQRES 13 B 319 ILE GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER SEQRES 14 B 319 GLY GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER SEQRES 15 B 319 VAL ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SEQRES 16 B 319 SER TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA SEQRES 17 B 319 PRO SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU SEQRES 18 B 319 PHE PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY SEQRES 19 B 319 ASN PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL SEQRES 20 B 319 GLN HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP SEQRES 21 B 319 VAL ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG SEQRES 22 B 319 THR LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU SEQRES 23 B 319 THR VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO SEQRES 24 B 319 THR ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 25 B 319 PHE TYR THR LEU ALA PRO MET HET NAG C 1 15 HET GAL C 2 11 HET FUL C 3 10 HET IMD A 854 5 HET IMD A 855 5 HET IMD A 4 5 HET EDO A 6 4 HET EDO A 8 4 HET EDO A 11 4 HET EDO A 12 4 HET EDO A 13 4 HET EDO A 14 4 HET EDO A 16 4 HET EDO A 22 4 HET EDO A 23 8 HET EDO A 26 4 HET IMD B 3 5 HET IMD B 5 5 HET EDO B 7 4 HET EDO B 9 4 HET EDO B 10 4 HET EDO B 15 4 HET EDO B 17 4 HET EDO B 18 4 HET EDO B 19 4 HET EDO B 20 4 HET EDO B 21 4 HET EDO B 24 4 HET EDO B 25 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG C8 H15 N O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUL C6 H12 O5 FORMUL 4 IMD 5(C3 H5 N2 1+) FORMUL 7 EDO 21(C2 H6 O2) FORMUL 30 HOH *748(H2 O) HELIX 1 1 THR A 233 LEU A 237 5 5 HELIX 2 2 LEU A 279 ILE A 283 5 5 HELIX 3 3 VAL A 346 GLY A 350 5 5 HELIX 4 4 THR A 370 LEU A 373 5 4 HELIX 5 5 ASP A 403 HIS A 407 5 5 HELIX 6 6 PRO A 462 SER A 473 1 12 HELIX 7 7 THR B 233 LEU B 237 5 5 HELIX 8 8 LEU B 279 ILE B 283 5 5 HELIX 9 9 THR B 370 LEU B 373 5 4 HELIX 10 10 ASP B 403 HIS B 407 5 5 HELIX 11 11 PRO B 462 SER B 473 1 12 SHEET 1 A 4 ALA A 456 CYS A 459 0 SHEET 2 A 4 GLU A 437 PHE A 445 -1 N PHE A 442 O CYS A 459 SHEET 3 A 4 VAL A 248 THR A 251 -1 N TYR A 250 O PHE A 441 SHEET 4 A 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 B 6 ALA A 456 CYS A 459 0 SHEET 2 B 6 GLU A 437 PHE A 445 -1 N PHE A 442 O CYS A 459 SHEET 3 B 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 B 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 B 6 VAL A 480 VAL A 486 -1 N ALA A 481 O LEU A 499 SHEET 6 B 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 C 8 GLY B 450 TYR B 452 0 SHEET 2 C 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 C 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 C 8 THR A 301 VAL A 307 -1 N MET A 305 O ILE A 376 SHEET 5 C 8 PHE A 286 VAL A 294 -1 N THR A 291 O ASN A 304 SHEET 6 C 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 C 8 GLN A 333 ARG A 341 -1 N TYR A 335 O VAL A 397 SHEET 8 C 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 D 8 GLY A 450 TYR A 452 0 SHEET 2 D 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 D 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 D 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 D 8 PHE B 286 GLN B 295 -1 N LYS B 289 O THR B 306 SHEET 6 D 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 D 8 GLN B 333 ARG B 341 -1 N VAL B 337 O THR B 395 SHEET 8 D 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 E 4 ALA B 456 CYS B 459 0 SHEET 2 E 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 E 4 VAL B 248 THR B 251 -1 N VAL B 248 O ARG B 443 SHEET 4 E 4 GLY B 513 PRO B 514 -1 O GLY B 513 N THR B 251 SHEET 1 F 6 ALA B 456 CYS B 459 0 SHEET 2 F 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 F 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 F 6 ARG B 492 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 F 6 VAL B 480 ASN B 487 -1 N ALA B 481 O LEU B 499 SHEET 6 F 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 LINK O4 NAG C 1 C1 GAL C 2 1555 1555 1.43 LINK O2 GAL C 2 C1 FUL C 3 1555 1555 1.43 CRYST1 65.168 79.104 68.912 90.00 99.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015345 0.000000 0.002579 0.00000 SCALE2 0.000000 0.012642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014715 0.00000 MASTER 406 0 29 11 36 0 0 6 0 0 0 50 END