HEADER TRANSFERASE 15-DEC-10 3Q0I TITLE METHIONYL-TRNA FORMYLTRANSFERASE FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONYL-TRNA FORMYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.2.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: O1 BIOVAR EL TOR STR. N16961; SOURCE 5 GENE: FMT, VC_0045; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.GU,L.PAPAZISI,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 08-NOV-17 3Q0I 1 REMARK REVDAT 1 29-DEC-10 3Q0I 0 JRNL AUTH J.OSIPIUK,M.GU,L.PAPAZISI,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL METHIONYL-TRNA FORMYLTRANSFERASE FROM VIBRIO CHOLERAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.617 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2538 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1680 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3487 ; 1.710 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4163 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 6.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;36.651 ;25.357 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;12.364 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.656 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2854 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 461 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 0.996 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 635 ; 0.292 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2599 ; 1.717 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 944 ; 2.571 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 869 ; 4.204 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8049 32.9882 70.6659 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.0280 REMARK 3 T33: 0.0292 T12: -0.0008 REMARK 3 T13: 0.0025 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.3627 L22: 1.6182 REMARK 3 L33: 0.6248 L12: 1.1030 REMARK 3 L13: 0.4122 L23: 0.6410 REMARK 3 S TENSOR REMARK 3 S11: 0.1629 S12: 0.0058 S13: -0.0521 REMARK 3 S21: 0.1873 S22: -0.1183 S23: 0.0116 REMARK 3 S31: 0.0397 S32: -0.0246 S33: -0.0445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3Q0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34252 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 33.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SULFATE, 20 % PEG REMARK 280 -3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.89100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.34600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.34600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.94550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.34600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.34600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 137.83650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.34600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.34600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.94550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.34600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.34600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 137.83650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.89100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ARG A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 GLY A 42 REMARK 465 ARG A 43 REMARK 465 GLY A 44 REMARK 465 LYS A 45 REMARK 465 LYS A 46 REMARK 465 LEU A 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 585 O HOH A 586 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 143 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 143 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 -61.81 -125.60 REMARK 500 SER A 26 -147.95 -92.92 REMARK 500 MSE A 236 127.06 71.69 REMARK 500 ALA A 242 -123.58 47.93 REMARK 500 ASP A 280 -176.88 70.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 27 HIS A 28 -128.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90604 RELATED DB: TARGETDB DBREF 3Q0I A 1 315 UNP Q9KVU4 FMT_VIBCH 1 315 SEQADV 3Q0I SER A -2 UNP Q9KVU4 EXPRESSION TAG SEQADV 3Q0I ASN A -1 UNP Q9KVU4 EXPRESSION TAG SEQADV 3Q0I ALA A 0 UNP Q9KVU4 EXPRESSION TAG SEQRES 1 A 318 SER ASN ALA MSE SER GLN SER LEU ARG ILE VAL PHE ALA SEQRES 2 A 318 GLY THR PRO ASP PHE ALA ALA ARG HIS LEU ALA ALA LEU SEQRES 3 A 318 LEU SER SER GLU HIS GLU ILE ILE ALA VAL TYR THR GLN SEQRES 4 A 318 PRO GLU ARG PRO ALA GLY ARG GLY LYS LYS LEU THR ALA SEQRES 5 A 318 SER PRO VAL LYS THR LEU ALA LEU GLU HIS ASN VAL PRO SEQRES 6 A 318 VAL TYR GLN PRO GLU ASN PHE LYS SER ASP GLU SER LYS SEQRES 7 A 318 GLN GLN LEU ALA ALA LEU ASN ALA ASP LEU MSE VAL VAL SEQRES 8 A 318 VAL ALA TYR GLY LEU LEU LEU PRO LYS VAL VAL LEU ASP SEQRES 9 A 318 THR PRO LYS LEU GLY CYS ILE ASN VAL HIS GLY SER ILE SEQRES 10 A 318 LEU PRO ARG TRP ARG GLY ALA ALA PRO ILE GLN ARG SER SEQRES 11 A 318 ILE TRP ALA GLY ASP SER GLU THR GLY VAL THR ILE MSE SEQRES 12 A 318 GLN MSE ASP VAL GLY LEU ASP THR GLY ASP MSE LEU LYS SEQRES 13 A 318 ILE ALA THR LEU PRO ILE GLU ALA SER ASP THR SER ALA SEQRES 14 A 318 SER MSE TYR ASP LYS LEU ALA GLU LEU GLY PRO GLN ALA SEQRES 15 A 318 LEU LEU GLU CYS LEU GLN ASP ILE ALA GLN GLY THR ALA SEQRES 16 A 318 VAL ALA VAL LYS GLN ASP ASP GLY LEU ALA ASN TYR ALA SEQRES 17 A 318 HIS LYS LEU SER LYS GLU GLU ALA ARG ILE ASN TRP SER SEQRES 18 A 318 ASP ALA ALA THR HIS ILE GLU ARG CYS ILE ARG ALA PHE SEQRES 19 A 318 ASN PRO TRP PRO MSE SER HIS PHE GLU VAL ALA GLU ASN SEQRES 20 A 318 SER ILE LYS VAL TRP GLN ALA ARG VAL GLU THR ARG ALA SEQRES 21 A 318 VAL THR GLN THR PRO GLY THR ILE ILE GLN ALA ASP LYS SEQRES 22 A 318 SER GLY ILE TYR VAL ALA THR GLY GLN ASP VAL LEU VAL SEQRES 23 A 318 LEU GLU SER LEU GLN ILE PRO GLY LYS LYS ALA LEU PRO SEQRES 24 A 318 VAL GLN ASP ILE LEU ASN ALA ARG ALA ASP TRP PHE SER SEQRES 25 A 318 VAL GLY SER GLN LEU SER MODRES 3Q0I MSE A 86 MET SELENOMETHIONINE MODRES 3Q0I MSE A 140 MET SELENOMETHIONINE MODRES 3Q0I MSE A 142 MET SELENOMETHIONINE MODRES 3Q0I MSE A 151 MET SELENOMETHIONINE MODRES 3Q0I MSE A 168 MET SELENOMETHIONINE MODRES 3Q0I MSE A 236 MET SELENOMETHIONINE HET MSE A 86 8 HET MSE A 140 8 HET MSE A 142 8 HET MSE A 151 8 HET MSE A 168 8 HET MSE A 236 8 HET SO4 A 501 5 HET SO4 A 502 5 HET GOL A 503 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *306(H2 O) HELIX 1 1 PRO A 13 SER A 25 1 13 HELIX 2 2 SER A 50 HIS A 59 1 10 HELIX 3 3 SER A 71 ALA A 80 1 10 HELIX 4 4 PRO A 96 ASP A 101 1 6 HELIX 5 5 ALA A 122 GLY A 131 1 10 HELIX 6 6 THR A 164 GLN A 189 1 26 HELIX 7 7 ASP A 198 ALA A 202 5 5 HELIX 8 8 SER A 209 ARG A 214 1 6 HELIX 9 9 ALA A 220 PHE A 231 1 12 HELIX 10 10 VAL A 297 ALA A 305 1 9 SHEET 1 A 7 VAL A 63 TYR A 64 0 SHEET 2 A 7 GLU A 29 TYR A 34 1 N VAL A 33 O TYR A 64 SHEET 3 A 7 ARG A 6 ALA A 10 1 N ILE A 7 O GLU A 29 SHEET 4 A 7 LEU A 85 VAL A 88 1 O VAL A 87 N ALA A 10 SHEET 5 A 7 CYS A 107 HIS A 111 1 O ILE A 108 N VAL A 88 SHEET 6 A 7 GLU A 134 GLN A 141 -1 O THR A 138 N HIS A 111 SHEET 7 A 7 MSE A 151 PRO A 158 -1 O LEU A 152 N ILE A 139 SHEET 1 B 5 HIS A 238 VAL A 241 0 SHEET 2 B 5 ASN A 244 GLU A 254 -1 O ILE A 246 N PHE A 239 SHEET 3 B 5 VAL A 281 GLN A 288 -1 O VAL A 283 N ARG A 252 SHEET 4 B 5 GLY A 272 ALA A 276 -1 N ILE A 273 O LEU A 284 SHEET 5 B 5 ILE A 265 ASP A 269 -1 N ILE A 266 O TYR A 274 SHEET 1 C 4 HIS A 238 VAL A 241 0 SHEET 2 C 4 ASN A 244 GLU A 254 -1 O ILE A 246 N PHE A 239 SHEET 3 C 4 VAL A 281 GLN A 288 -1 O VAL A 283 N ARG A 252 SHEET 4 C 4 LEU A 295 PRO A 296 -1 O LEU A 295 N LEU A 287 LINK C LEU A 85 N MSE A 86 1555 1555 1.31 LINK C MSE A 86 N VAL A 87 1555 1555 1.32 LINK C ILE A 139 N MSE A 140 1555 1555 1.30 LINK C MSE A 140 N GLN A 141 1555 1555 1.33 LINK C GLN A 141 N MSE A 142 1555 1555 1.32 LINK C MSE A 142 N ASP A 143 1555 1555 1.33 LINK C ASP A 150 N MSE A 151 1555 1555 1.31 LINK C MSE A 151 N LEU A 152 1555 1555 1.34 LINK C SER A 167 N MSE A 168 1555 1555 1.34 LINK C MSE A 168 N TYR A 169 1555 1555 1.32 LINK C PRO A 235 N MSE A 236 1555 1555 1.31 LINK C MSE A 236 N SER A 237 1555 1555 1.33 CISPEP 1 LEU A 115 PRO A 116 0 9.88 CISPEP 2 ASN A 232 PRO A 233 0 22.13 CISPEP 3 TRP A 234 PRO A 235 0 2.26 SITE 1 AC1 5 GLN A 77 ASN A 203 HOH A 405 HOH A 547 SITE 2 AC1 5 HOH A 566 SITE 1 AC2 3 ARG A 6 LYS A 207 HOH A 570 SITE 1 AC3 8 PHE A 15 HIS A 111 GLY A 112 ALA A 121 SITE 2 AC3 8 PRO A 123 HOH A 319 HOH A 381 HOH A 407 CRYST1 66.692 66.692 183.782 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005441 0.00000 MASTER 371 0 9 10 16 0 5 6 0 0 0 25 END