HEADER SUGAR BINDING PROTEIN 04-NOV-10 3PHZ TITLE CRYSTAL STRUCTURE ANALYSIS OF POLYPORUS SQUAMOSUS LECTIN BOUND TO TITLE 2 HUMAN-TYPE INFLUENZA-BINDING EPITOPE NEU5ACA2-6GALB1-4GLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN B-RELATED LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLYPORUS SQUAMOSUS; SOURCE 3 ORGANISM_TAXID: 5640; SOURCE 4 GENE: PSL1A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NOVA BLUE (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET43A KEYWDS BETA TREFOIL, SACCHARIDE BINDING LECTIN, 2, 6-SIALYL-LACTOSAMINE, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.KADIRVELRAJ,R.J.WOODS REVDAT 3 29-JUL-20 3PHZ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 08-NOV-17 3PHZ 1 REMARK REVDAT 1 06-JUL-11 3PHZ 0 JRNL AUTH R.KADIRVELRAJ,O.C.GRANT,I.J.GOLDSTEIN,H.C.WINTER,H.TATENO, JRNL AUTH 2 E.FADDA,R.J.WOODS JRNL TITL STRUCTURE AND BINDING ANALYSIS OF POLYPORUS SQUAMOSUS LECTIN JRNL TITL 2 IN COMPLEX WITH THE NEU5AC{ALPHA}2-6GAL{BETA}1-4GLCNAC JRNL TITL 3 HUMAN-TYPE INFLUENZA RECEPTOR. JRNL REF GLYCOBIOLOGY V. 21 973 2011 JRNL REFN ISSN 0959-6658 JRNL PMID 21436237 JRNL DOI 10.1093/GLYCOB/CWR030 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 78403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3939 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4912 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 632 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.977 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4526 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6166 ; 1.981 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 550 ; 7.396 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;34.943 ;24.519 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 652 ;12.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.103 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3472 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2736 ; 1.388 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4364 ; 2.349 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1790 ; 3.032 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1802 ; 4.558 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3PHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78403 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 38.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23800 REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IHO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PH 7, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.90450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.90450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 326 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 ASP A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 MET B 1 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 ASP B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 GAL C 2 C2 SIA A 303 1.89 REMARK 500 O6 GAL D 2 O6 SIA D 3 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 144 CE3 TRP A 144 CZ3 0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 238 CB - CG - CD2 ANGL. DEV. = -15.2 DEGREES REMARK 500 MET A 239 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG B 88 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 LEU B 238 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 120.40 -36.15 REMARK 500 ASP A 58 10.19 56.97 REMARK 500 ASN A 103 30.04 134.80 REMARK 500 LEU A 166 -54.70 -123.16 REMARK 500 ASP A 176 54.97 -144.92 REMARK 500 GLU A 204 -46.74 68.19 REMARK 500 ASN A 230 -167.08 -117.62 REMARK 500 ASN A 258 101.36 -160.52 REMARK 500 HIS B 6 119.45 -36.09 REMARK 500 ALA B 74 83.48 -58.93 REMARK 500 HIS B 76 3.63 54.24 REMARK 500 ASN B 121 90.37 81.51 REMARK 500 THR B 127 179.13 -22.89 REMARK 500 LEU B 166 -56.80 -121.28 REMARK 500 ASP B 176 56.22 -140.35 REMARK 500 GLU B 204 -45.69 63.39 REMARK 500 PHE B 206 79.52 -150.12 REMARK 500 CYS B 236 107.08 -160.33 REMARK 500 ASN B 258 99.89 -160.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 9 TYR A 10 149.54 REMARK 500 TYR B 9 TYR B 10 148.86 REMARK 500 ASN B 103 ASP B 104 -145.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SIA A 303 DBREF 3PHZ A 1 286 UNP Q75WT9 Q75WT9_9APHY 1 286 DBREF 3PHZ B 1 286 UNP Q75WT9 Q75WT9_9APHY 1 286 SEQRES 1 A 286 MET SER PHE GLN GLY HIS GLY ILE TYR TYR ILE ALA SER SEQRES 2 A 286 ALA TYR VAL ALA ASN THR ARG LEU ALA LEU SER GLU ASP SEQRES 3 A 286 SER SER ALA ASN LYS SER PRO ASP VAL ILE ILE SER SER SEQRES 4 A 286 ASP ALA VAL ASP PRO LEU ASN ASN LEU TRP LEU ILE GLU SEQRES 5 A 286 PRO VAL GLY GLU ALA ASP THR TYR THR VAL ARG ASN ALA SEQRES 6 A 286 PHE ALA GLY SER TYR MET ASP LEU ALA GLY HIS ALA ALA SEQRES 7 A 286 THR ASP GLY THR ALA ILE ILE GLY TYR ARG PRO THR GLY SEQRES 8 A 286 GLY ASP ASN GLN LYS TRP ILE ILE SER GLN ILE ASN ASP SEQRES 9 A 286 VAL TRP LYS ILE LYS SER LYS GLU THR GLY THR PHE VAL SEQRES 10 A 286 THR LEU LEU ASN GLY ASP GLY GLY GLY THR GLY THR VAL SEQRES 11 A 286 VAL GLY TRP GLN ASN ILE THR ASN ASN THR SER GLN ASN SEQRES 12 A 286 TRP THR PHE GLN LYS LEU SER GLN THR GLY ALA ASN VAL SEQRES 13 A 286 HIS ALA THR LEU LEU ALA CYS PRO ALA LEU ARG GLN ASP SEQRES 14 A 286 PHE LYS SER TYR LEU SER ASP GLY LEU TYR LEU VAL LEU SEQRES 15 A 286 THR ARG ASP GLN ILE SER SER ILE TRP GLN ALA SER GLY SEQRES 16 A 286 LEU GLY SER THR PRO TRP ARG SER GLU ILE PHE ASP CYS SEQRES 17 A 286 ASP ASP PHE ALA THR VAL PHE LYS GLY ALA VAL ALA LYS SEQRES 18 A 286 TRP GLY ASN GLU ASN PHE LYS ALA ASN GLY PHE ALA LEU SEQRES 19 A 286 LEU CYS GLY LEU MET PHE GLY SER LYS SER SER GLY ALA SEQRES 20 A 286 HIS ALA TYR ASN TRP PHE VAL GLU ARG GLY ASN PHE SER SEQRES 21 A 286 THR VAL THR PHE PHE GLU PRO GLN ASN GLY THR TYR SER SEQRES 22 A 286 ALA ASN ALA TRP ASP TYR LYS ALA TYR PHE GLY LEU PHE SEQRES 1 B 286 MET SER PHE GLN GLY HIS GLY ILE TYR TYR ILE ALA SER SEQRES 2 B 286 ALA TYR VAL ALA ASN THR ARG LEU ALA LEU SER GLU ASP SEQRES 3 B 286 SER SER ALA ASN LYS SER PRO ASP VAL ILE ILE SER SER SEQRES 4 B 286 ASP ALA VAL ASP PRO LEU ASN ASN LEU TRP LEU ILE GLU SEQRES 5 B 286 PRO VAL GLY GLU ALA ASP THR TYR THR VAL ARG ASN ALA SEQRES 6 B 286 PHE ALA GLY SER TYR MET ASP LEU ALA GLY HIS ALA ALA SEQRES 7 B 286 THR ASP GLY THR ALA ILE ILE GLY TYR ARG PRO THR GLY SEQRES 8 B 286 GLY ASP ASN GLN LYS TRP ILE ILE SER GLN ILE ASN ASP SEQRES 9 B 286 VAL TRP LYS ILE LYS SER LYS GLU THR GLY THR PHE VAL SEQRES 10 B 286 THR LEU LEU ASN GLY ASP GLY GLY GLY THR GLY THR VAL SEQRES 11 B 286 VAL GLY TRP GLN ASN ILE THR ASN ASN THR SER GLN ASN SEQRES 12 B 286 TRP THR PHE GLN LYS LEU SER GLN THR GLY ALA ASN VAL SEQRES 13 B 286 HIS ALA THR LEU LEU ALA CYS PRO ALA LEU ARG GLN ASP SEQRES 14 B 286 PHE LYS SER TYR LEU SER ASP GLY LEU TYR LEU VAL LEU SEQRES 15 B 286 THR ARG ASP GLN ILE SER SER ILE TRP GLN ALA SER GLY SEQRES 16 B 286 LEU GLY SER THR PRO TRP ARG SER GLU ILE PHE ASP CYS SEQRES 17 B 286 ASP ASP PHE ALA THR VAL PHE LYS GLY ALA VAL ALA LYS SEQRES 18 B 286 TRP GLY ASN GLU ASN PHE LYS ALA ASN GLY PHE ALA LEU SEQRES 19 B 286 LEU CYS GLY LEU MET PHE GLY SER LYS SER SER GLY ALA SEQRES 20 B 286 HIS ALA TYR ASN TRP PHE VAL GLU ARG GLY ASN PHE SER SEQRES 21 B 286 THR VAL THR PHE PHE GLU PRO GLN ASN GLY THR TYR SER SEQRES 22 B 286 ALA ASN ALA TRP ASP TYR LYS ALA TYR PHE GLY LEU PHE HET NAG C 1 15 HET GAL C 2 11 HET NAG D 1 15 HET GAL D 2 11 HET SIA D 3 20 HET SIA A 303 20 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 4 SIA 2(C11 H19 N O9) FORMUL 6 HOH *632(H2 O) HELIX 1 1 PRO A 44 ASN A 47 5 4 HELIX 2 2 GLY A 75 ALA A 77 5 3 HELIX 3 3 GLY A 92 GLN A 95 5 4 HELIX 4 4 GLY A 153 CYS A 163 1 11 HELIX 5 5 THR A 183 GLY A 195 1 13 HELIX 6 6 LEU A 196 THR A 199 5 4 HELIX 7 7 ASP A 207 PHE A 227 1 21 HELIX 8 8 ASN A 275 TYR A 279 5 5 HELIX 9 9 PRO B 44 ASN B 47 5 4 HELIX 10 10 GLY B 92 GLN B 95 5 4 HELIX 11 11 GLY B 153 CYS B 163 1 11 HELIX 12 12 THR B 183 GLY B 195 1 13 HELIX 13 13 LEU B 196 THR B 199 5 4 HELIX 14 14 ASP B 207 PHE B 227 1 21 HELIX 15 15 ASN B 275 TYR B 279 5 5 SHEET 1 A 7 GLY A 7 SER A 13 0 SHEET 2 A 7 TRP A 49 PRO A 53 -1 O ILE A 51 N GLY A 7 SHEET 3 A 7 THR A 59 ASN A 64 -1 O ARG A 63 N LEU A 50 SHEET 4 A 7 TRP A 97 GLN A 101 -1 O TRP A 97 N TYR A 60 SHEET 5 A 7 TRP A 106 SER A 110 -1 O LYS A 109 N ILE A 98 SHEET 6 A 7 TRP A 144 LYS A 148 -1 O TRP A 144 N TRP A 106 SHEET 7 A 7 GLY A 7 SER A 13 -1 N ALA A 12 O THR A 145 SHEET 1 B 2 THR A 19 LEU A 23 0 SHEET 2 B 2 VAL A 35 SER A 39 -1 O ILE A 36 N ALA A 22 SHEET 1 C 4 TYR A 70 LEU A 73 0 SHEET 2 C 4 THR A 82 TYR A 87 -1 O TYR A 87 N TYR A 70 SHEET 3 C 4 THR A 129 TRP A 133 -1 O GLY A 132 N THR A 82 SHEET 4 C 4 PHE A 116 LEU A 120 -1 N LEU A 120 O THR A 129 SHEET 1 D 3 SER A 150 THR A 152 0 SHEET 2 D 3 LEU A 178 LEU A 180 -1 O TYR A 179 N GLN A 151 SHEET 3 D 3 ALA A 233 LEU A 234 1 O ALA A 233 N LEU A 180 SHEET 1 E 6 LYS A 171 SER A 172 0 SHEET 2 E 6 LYS A 280 PHE A 286 1 O PHE A 286 N LYS A 171 SHEET 3 E 6 GLY A 237 LYS A 243 -1 N PHE A 240 O PHE A 283 SHEET 4 E 6 GLY A 246 GLU A 255 -1 O TRP A 252 N GLY A 237 SHEET 5 E 6 ASN A 258 PHE A 265 -1 O PHE A 265 N ASN A 251 SHEET 6 E 6 TYR A 272 SER A 273 -1 O SER A 273 N PHE A 264 SHEET 1 F 7 GLY B 7 SER B 13 0 SHEET 2 F 7 TRP B 49 PRO B 53 -1 O ILE B 51 N GLY B 7 SHEET 3 F 7 THR B 59 ASN B 64 -1 O ARG B 63 N LEU B 50 SHEET 4 F 7 TRP B 97 GLN B 101 -1 O TRP B 97 N TYR B 60 SHEET 5 F 7 TRP B 106 SER B 110 -1 O LYS B 109 N ILE B 98 SHEET 6 F 7 TRP B 144 LYS B 148 -1 O TRP B 144 N TRP B 106 SHEET 7 F 7 GLY B 7 SER B 13 -1 N ALA B 12 O THR B 145 SHEET 1 G 2 THR B 19 LEU B 23 0 SHEET 2 G 2 VAL B 35 SER B 39 -1 O SER B 38 N ARG B 20 SHEET 1 H 4 TYR B 70 LEU B 73 0 SHEET 2 H 4 THR B 82 TYR B 87 -1 O TYR B 87 N TYR B 70 SHEET 3 H 4 THR B 129 TRP B 133 -1 O GLY B 132 N THR B 82 SHEET 4 H 4 PHE B 116 LEU B 120 -1 N PHE B 116 O TRP B 133 SHEET 1 I 3 SER B 150 THR B 152 0 SHEET 2 I 3 LEU B 178 LEU B 180 -1 O TYR B 179 N GLN B 151 SHEET 3 I 3 ALA B 233 LEU B 234 1 O ALA B 233 N LEU B 178 SHEET 1 J 6 LYS B 171 SER B 172 0 SHEET 2 J 6 LYS B 280 PHE B 286 1 O PHE B 286 N LYS B 171 SHEET 3 J 6 GLY B 237 LYS B 243 -1 N SER B 242 O LYS B 280 SHEET 4 J 6 GLY B 246 GLU B 255 -1 O TRP B 252 N GLY B 237 SHEET 5 J 6 ASN B 258 PHE B 265 -1 O THR B 263 N PHE B 253 SHEET 6 J 6 TYR B 272 SER B 273 -1 O SER B 273 N PHE B 264 LINK O4 NAG C 1 C1 GAL C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 GAL D 2 1555 1555 1.43 LINK O6 GAL D 2 C2 SIA D 3 1555 1555 1.51 CRYST1 115.809 59.400 103.228 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008635 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009687 0.00000 MASTER 380 0 6 15 44 0 0 6 0 0 0 44 END