HEADER DNA 21-OCT-10 3PBX TITLE STRONTIUM BOUND TO THE SEQUENCE D(CCGGCGCCGG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS HOLLIDAY JUNCTION (HIGHER ORDER DNA STRUCTURE), INTERMEDIATE FORMED KEYWDS 2 IN HOMOLOGOUS RECOMBINATION, DNA EXPDTA X-RAY DIFFRACTION AUTHOR A.NASEER,C.J.CARDIN REVDAT 2 08-NOV-17 3PBX 1 AUTHOR JRNL REMARK REVDAT 1 02-FEB-11 3PBX 0 JRNL AUTH A.NASEER,C.J.CARDIN JRNL TITL STRONTIUM BOUND TO THE SEQUENCE D(CCGGCGCCGG) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 78.6 REMARK 3 NUMBER OF REFLECTIONS : 3531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 175 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.4770 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.4540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.38000 REMARK 3 B22 (A**2) : 3.36000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.273 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 452 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 694 ; 3.666 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 78 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 210 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 130 ; 0.259 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 245 ; 0.344 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 36 ; 0.389 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.172 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.106 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.434 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 546 ; 3.007 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 694 ; 4.016 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTI-GRADED OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD SAPPHIRE CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO RED REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO RED REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.879 REMARK 200 RESOLUTION RANGE LOW (A) : 14.866 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.6 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3GOJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SRCL2, MPD, NACACODYLATE , PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.44500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 12.50050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.44500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 12.50050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -12.67587 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.80776 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 36 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N3 DG B 16 O HOH B 29 1.83 REMARK 500 O2 DC B 15 O HOH B 75 1.96 REMARK 500 O HOH A 30 O HOH B 32 1.96 REMARK 500 O6 DG B 20 O HOH B 82 2.03 REMARK 500 OP2 DC B 17 O HOH B 80 2.03 REMARK 500 N3 DG B 19 O HOH B 54 2.05 REMARK 500 N3 DG B 20 O HOH B 72 2.10 REMARK 500 OP1 DC B 15 O HOH B 41 2.14 REMARK 500 O2 DC A 5 O HOH A 39 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 64 O HOH B 65 4456 1.49 REMARK 500 O HOH B 73 O HOH B 77 3555 1.98 REMARK 500 O HOH B 73 O HOH B 82 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 O3' DC A 1 C3' -0.044 REMARK 500 DC A 2 O3' DC A 2 C3' -0.055 REMARK 500 DG A 3 O3' DG A 3 C3' -0.046 REMARK 500 DC A 5 O3' DC A 5 C3' -0.045 REMARK 500 DG A 6 O3' DG A 6 C3' -0.045 REMARK 500 DC A 7 O3' DC A 7 C3' -0.079 REMARK 500 DC B 11 O3' DC B 11 C3' -0.039 REMARK 500 DG B 13 C8 DG B 13 N9 0.053 REMARK 500 DC B 15 O3' DC B 15 C3' -0.062 REMARK 500 DC B 15 N1 DC B 15 C6 -0.037 REMARK 500 DG B 20 C5' DG B 20 C4' 0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C4' - C3' ANGL. DEV. = -3.8 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC A 1 N1 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC A 2 O3' - P - O5' ANGL. DEV. = 11.5 DEGREES REMARK 500 DC A 2 O4' - C4' - C3' ANGL. DEV. = -3.8 DEGREES REMARK 500 DC A 2 C1' - O4' - C4' ANGL. DEV. = 4.9 DEGREES REMARK 500 DC A 2 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = -5.8 DEGREES REMARK 500 DG A 3 O5' - P - OP2 ANGL. DEV. = -7.3 DEGREES REMARK 500 DG A 3 O5' - C5' - C4' ANGL. DEV. = -8.5 DEGREES REMARK 500 DG A 4 O5' - C5' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG A 4 C5 - C6 - O6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC A 5 O4' - C4' - C3' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC A 5 C4' - C3' - C2' ANGL. DEV. = 5.8 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = -7.3 DEGREES REMARK 500 DC A 5 C6 - N1 - C2 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG A 6 N1 - C6 - O6 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG A 6 C5 - C6 - O6 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC A 8 O4' - C1' - C2' ANGL. DEV. = -5.7 DEGREES REMARK 500 DC A 8 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG A 9 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG A 9 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG A 9 P - O5' - C5' ANGL. DEV. = 10.6 DEGREES REMARK 500 DG A 9 N1 - C6 - O6 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG A 10 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG A 10 O4' - C1' - N9 ANGL. DEV. = -7.1 DEGREES REMARK 500 DC B 12 O4' - C1' - N1 ANGL. DEV. = -7.2 DEGREES REMARK 500 DC B 12 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DG B 13 OP1 - P - OP2 ANGL. DEV. = 10.3 DEGREES REMARK 500 DG B 13 O5' - P - OP2 ANGL. DEV. = -13.6 DEGREES REMARK 500 DG B 13 C6 - N1 - C2 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG B 13 C5 - C6 - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG B 13 C5 - C6 - O6 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 14 C6 - C5 - N7 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG B 14 N1 - C6 - O6 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG B 14 C5 - C6 - O6 ANGL. DEV. = -6.1 DEGREES REMARK 500 DC B 15 OP1 - P - OP2 ANGL. DEV. = 9.3 DEGREES REMARK 500 DC B 15 O5' - P - OP1 ANGL. DEV. = -8.7 DEGREES REMARK 500 DC B 15 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC B 15 C2 - N3 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 DC B 15 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC B 15 C5 - C6 - N1 ANGL. DEV. = -3.0 DEGREES REMARK 500 DC B 15 N3 - C4 - N4 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC B 15 C5 - C4 - N4 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG B 16 C3' - O3' - P ANGL. DEV. = 13.1 DEGREES REMARK 500 DC B 17 P - O5' - C5' ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 59 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 27 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 42 O REMARK 620 2 HOH B 43 O 79.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR B 22 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 27 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GOO RELATED DB: PDB REMARK 900 STRUCTURE BOUND TO THE HOLLIDAY JUNCTION SEQUENCE D(TCGGCGCCGA) DBREF 3PBX A 1 10 PDB 3PBX 3PBX 1 10 DBREF 3PBX B 11 20 PDB 3PBX 3PBX 11 20 SEQRES 1 A 10 DC DC DG DG DC DG DC DC DG DG SEQRES 1 B 10 DC DC DG DG DC DG DC DC DG DG HET SR B 22 1 HET NA B 27 1 HETNAM SR STRONTIUM ION HETNAM NA SODIUM ION FORMUL 3 SR SR 2+ FORMUL 4 NA NA 1+ FORMUL 5 HOH *57(H2 O) LINK NA NA B 27 O HOH B 42 1555 1555 2.18 LINK NA NA B 27 O HOH B 43 1555 1555 2.46 LINK SR SR B 22 O HOH B 69 1555 1555 2.80 SITE 1 AC1 3 HOH A 23 HOH A 24 HOH B 69 SITE 1 AC2 2 HOH B 42 HOH B 43 CRYST1 64.890 25.001 37.044 90.00 110.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015411 0.000000 0.005611 0.00000 SCALE2 0.000000 0.039998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028728 0.00000 MASTER 411 0 2 0 0 0 2 6 0 0 0 2 END