HEADER LYASE 04-OCT-10 3P3B TITLE CRYSTAL STRUCTURE OF GALACTURONATE DEHYDRATASE FROM GEOBACILLUS SP. TITLE 2 COMPLEXED WITH D-TARTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GALACTURONATE DEHYDRATASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS SP. Y412MC10; SOURCE 3 ORGANISM_TAXID: 481743; SOURCE 4 STRAIN: Y412MC10; SOURCE 5 GENE: GYMC10_3367; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOLASE SUPERFAMILY FOLD, GALACTURONATE DEHYDRATASE, D-TARTRATE, KEYWDS 2 GALACTURONATE, LYASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 4 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,F.GRONINGER-POE,J.A.GERLT,S.K.BURLEY, AUTHOR 2 S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 4 10-FEB-21 3P3B 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 14-DEC-11 3P3B 1 JRNL SOURCE TITLE VERSN REVDAT 2 06-JUL-11 3P3B 1 AUTHOR KEYWDS REVDAT 1 29-JUN-11 3P3B 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,F.GRONINGER-POE,J.A.GERLT, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GALACTURONATE DEHYDRATASE FROM JRNL TITL 2 GEOBACILLUS SP. COMPLEXED WITH D-TARTRATE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 87428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2127 - 5.1257 0.99 3074 148 0.1772 0.1928 REMARK 3 2 5.1257 - 4.0696 1.00 3020 142 0.1599 0.1804 REMARK 3 3 4.0696 - 3.5555 1.00 3020 161 0.1722 0.2103 REMARK 3 4 3.5555 - 3.2305 1.00 2982 144 0.2051 0.2187 REMARK 3 5 3.2305 - 2.9991 1.00 2978 158 0.2295 0.2852 REMARK 3 6 2.9991 - 2.8223 1.00 2979 162 0.2325 0.2813 REMARK 3 7 2.8223 - 2.6810 1.00 2973 157 0.2271 0.2563 REMARK 3 8 2.6810 - 2.5643 1.00 2953 182 0.2220 0.2532 REMARK 3 9 2.5643 - 2.4656 1.00 2962 160 0.2208 0.2964 REMARK 3 10 2.4656 - 2.3805 1.00 2940 166 0.2255 0.2634 REMARK 3 11 2.3805 - 2.3061 1.00 2965 169 0.2195 0.2517 REMARK 3 12 2.3061 - 2.2402 1.00 2993 132 0.2182 0.2872 REMARK 3 13 2.2402 - 2.1812 1.00 2934 160 0.2252 0.2519 REMARK 3 14 2.1812 - 2.1280 1.00 2973 153 0.2319 0.2986 REMARK 3 15 2.1280 - 2.0796 1.00 2961 160 0.2269 0.2942 REMARK 3 16 2.0796 - 2.0354 1.00 2949 154 0.2366 0.2521 REMARK 3 17 2.0354 - 1.9946 1.00 2946 134 0.2345 0.2283 REMARK 3 18 1.9946 - 1.9570 1.00 2960 159 0.2396 0.2845 REMARK 3 19 1.9570 - 1.9221 1.00 2949 163 0.2460 0.2630 REMARK 3 20 1.9221 - 1.8895 1.00 2936 167 0.2649 0.3050 REMARK 3 21 1.8895 - 1.8590 1.00 2979 160 0.2675 0.3151 REMARK 3 22 1.8590 - 1.8304 1.00 2919 158 0.2780 0.2905 REMARK 3 23 1.8304 - 1.8035 0.99 2941 169 0.2956 0.3393 REMARK 3 24 1.8035 - 1.7781 0.98 2928 148 0.3021 0.3344 REMARK 3 25 1.7781 - 1.7540 0.95 2788 141 0.3166 0.3427 REMARK 3 26 1.7540 - 1.7313 0.87 2552 137 0.3256 0.3409 REMARK 3 27 1.7313 - 1.7096 0.75 2215 125 0.3374 0.3998 REMARK 3 28 1.7096 - 1.6890 0.61 1799 96 0.3497 0.3888 REMARK 3 29 1.6890 - 1.6694 0.49 1465 77 0.3585 0.3567 REMARK 3 30 1.6694 - 1.6506 0.34 1011 42 0.3726 0.3565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 35.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.05110 REMARK 3 B22 (A**2) : -1.16720 REMARK 3 B33 (A**2) : -1.88390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.41060 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6030 REMARK 3 ANGLE : 1.063 8171 REMARK 3 CHIRALITY : 0.075 866 REMARK 3 PLANARITY : 0.004 1069 REMARK 3 DIHEDRAL : 16.897 2165 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.651 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG MONOMETHYL ETHER 2000, 0.1M REMARK 280 POTASSIUM THIOCYANATE , PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.42950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.02550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.42950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.02550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 117 REMARK 465 ALA A 118 REMARK 465 HIS A 119 REMARK 465 LEU A 120 REMARK 465 GLU A 121 REMARK 465 THR A 122 REMARK 465 GLY A 123 REMARK 465 ALA A 124 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ASN B 4 REMARK 465 ILE B 5 REMARK 465 THR B 6 REMARK 465 GLY B 7 REMARK 465 ILE B 8 REMARK 465 GLN B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 TRP B 12 REMARK 465 GLY B 117 REMARK 465 ALA B 118 REMARK 465 HIS B 119 REMARK 465 LEU B 120 REMARK 465 GLU B 121 REMARK 465 THR B 122 REMARK 465 GLY B 123 REMARK 465 ALA B 124 REMARK 465 GLU B 385 REMARK 465 GLY B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 176 -46.74 -141.91 REMARK 500 ASN A 331 39.57 -98.08 REMARK 500 ARG B 176 -41.13 -142.41 REMARK 500 ASN B 209 49.16 37.77 REMARK 500 GLU B 234 59.12 37.98 REMARK 500 ASN B 331 31.24 -92.28 REMARK 500 GLU B 333 -70.72 -98.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 393 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 GLU A 233 OE2 92.7 REMARK 620 3 GLU A 263 OE2 171.3 88.5 REMARK 620 4 TAR A 395 O11 94.7 88.8 93.9 REMARK 620 5 TAR A 395 O2 94.5 164.3 86.5 76.7 REMARK 620 6 HOH A 606 O 88.8 106.8 82.6 163.8 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 394 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 234 OE2 REMARK 620 2 GLU A 238 OE2 173.9 REMARK 620 3 ASP A 261 OD1 95.4 90.8 REMARK 620 4 HOH A 607 O 87.5 86.3 176.6 REMARK 620 5 HOH A 608 O 92.3 87.1 90.4 87.8 REMARK 620 6 HOH A 609 O 90.9 90.2 84.9 96.7 174.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 393 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 207 OD2 REMARK 620 2 GLU B 233 OE2 97.5 REMARK 620 3 GLU B 263 OE2 174.9 87.3 REMARK 620 4 TAR B 395 O11 93.6 85.3 88.6 REMARK 620 5 TAR B 395 O2 89.4 155.4 86.9 70.6 REMARK 620 6 HOH B 478 O 87.9 112.4 88.6 161.9 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 394 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 234 OE2 REMARK 620 2 GLU B 238 OE2 171.5 REMARK 620 3 ASP B 261 OD1 96.8 90.6 REMARK 620 4 HOH B 479 O 98.9 85.5 88.3 REMARK 620 5 HOH B 480 O 88.9 84.2 171.9 85.2 REMARK 620 6 HOH B 481 O 88.8 86.8 90.7 172.3 95.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAR A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAR B 395 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OPS RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH THE SAME LIGAND CRYSTALLIZED IN REMARK 900 DIFFERENT UNIT CELL AND WITH DIFFERENT BINDING DETAILS REMARK 900 RELATED ID: NYSGXRC-9825A RELATED DB: TARGETDB DBREF 3P3B A 1 384 UNP D3EID5 D3EID5_GEOS4 1 382 DBREF 3P3B B 1 384 UNP D3EID5 D3EID5_GEOS4 1 382 SEQADV 3P3B SER A 2 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B LEU A 3 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B GLU A 385 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B GLY A 386 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 387 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 388 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 389 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 390 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 391 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 392 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B SER B 2 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B LEU B 3 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B GLU B 385 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B GLY B 386 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 387 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 388 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 389 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 390 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 391 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 392 UNP D3EID5 EXPRESSION TAG SEQRES 1 A 392 MET SER LEU ASN ILE THR GLY ILE GLN SER ASP TRP LYS SEQRES 2 A 392 VAL GLU LYS ILE GLU PHE ALA LYS LEU THR GLY GLU ARG SEQRES 3 A 392 ALA ARG SER ALA GLY ALA ASN GLY ARG ILE GLY VAL HIS SEQRES 4 A 392 GLY LYS SER CYS THR VAL ASP ILE ALA ARG ILE THR ILE SEQRES 5 A 392 ASP GLY GLN THR GLY TYR GLY SER SER ILE HIS MET THR SEQRES 6 A 392 PRO GLU TRP ALA GLU ASP VAL ILE GLY ARG ARG LEU LEU SEQRES 7 A 392 ASP LEU PHE ASP ASP ARG GLY ARG LEU ARG GLU ALA TYR SEQRES 8 A 392 ARG LEU GLN LEU GLU TYR PRO VAL LEU ASP TRP LEU GLY SEQRES 9 A 392 GLN ARG GLN GLY LYS PRO VAL TYR ASP LEU VAL SER GLY SEQRES 10 A 392 ALA HIS LEU GLU THR GLY ALA SER LEU VAL VAL PRO CYS SEQRES 11 A 392 TYR ASP THR SER LEU TYR PHE ASP ASP LEU HIS LEU ALA SEQRES 12 A 392 ASP GLU ARG ALA ALA VAL ALA LEU MET GLN GLU GLU ALA SEQRES 13 A 392 MET GLN GLY TYR ALA LYS GLY GLN ARG HIS PHE LYS ILE SEQRES 14 A 392 LYS VAL GLY ARG GLY GLY ARG HIS MET PRO LEU TRP GLU SEQRES 15 A 392 GLY THR LYS ARG ASP ILE ALA ILE VAL ARG GLY ILE SER SEQRES 16 A 392 GLU VAL ALA GLY PRO ALA GLY LYS ILE MET ILE ASP ALA SEQRES 17 A 392 ASN ASN ALA TYR ASN LEU ASN LEU THR LYS GLU VAL LEU SEQRES 18 A 392 ALA ALA LEU SER ASP VAL ASN LEU TYR TRP LEU GLU GLU SEQRES 19 A 392 ALA PHE HIS GLU ASP GLU ALA LEU TYR GLU ASP LEU LYS SEQRES 20 A 392 GLU TRP LEU GLY GLN ARG GLY GLN ASN VAL LEU ILE ALA SEQRES 21 A 392 ASP GLY GLU GLY LEU ALA SER PRO HIS LEU ILE GLU TRP SEQRES 22 A 392 ALA THR ARG GLY ARG VAL ASP VAL LEU GLN TYR ASP ILE SEQRES 23 A 392 ILE TRP PRO GLY PHE THR HIS TRP MET GLU LEU GLY GLU SEQRES 24 A 392 LYS LEU ASP ALA HIS GLY LEU ARG SER ALA PRO HIS CYS SEQRES 25 A 392 TYR GLY ASN ALA TYR GLY ILE TYR ALA SER GLY HIS LEU SEQRES 26 A 392 SER ALA ALA VAL ARG ASN PHE GLU PHE VAL GLU TYR ASP SEQRES 27 A 392 ASP ILE THR ILE GLU GLY MET ASP VAL SER GLY TYR ARG SEQRES 28 A 392 ILE GLU ASN GLY GLU ILE HIS VAL PRO ALA THR PRO GLY SEQRES 29 A 392 PHE GLY ILE VAL PHE ASP ASP GLU LEU VAL THR TYR LEU SEQRES 30 A 392 ILE ASN ARG SER GLY TRP SER GLU GLY HIS HIS HIS HIS SEQRES 31 A 392 HIS HIS SEQRES 1 B 392 MET SER LEU ASN ILE THR GLY ILE GLN SER ASP TRP LYS SEQRES 2 B 392 VAL GLU LYS ILE GLU PHE ALA LYS LEU THR GLY GLU ARG SEQRES 3 B 392 ALA ARG SER ALA GLY ALA ASN GLY ARG ILE GLY VAL HIS SEQRES 4 B 392 GLY LYS SER CYS THR VAL ASP ILE ALA ARG ILE THR ILE SEQRES 5 B 392 ASP GLY GLN THR GLY TYR GLY SER SER ILE HIS MET THR SEQRES 6 B 392 PRO GLU TRP ALA GLU ASP VAL ILE GLY ARG ARG LEU LEU SEQRES 7 B 392 ASP LEU PHE ASP ASP ARG GLY ARG LEU ARG GLU ALA TYR SEQRES 8 B 392 ARG LEU GLN LEU GLU TYR PRO VAL LEU ASP TRP LEU GLY SEQRES 9 B 392 GLN ARG GLN GLY LYS PRO VAL TYR ASP LEU VAL SER GLY SEQRES 10 B 392 ALA HIS LEU GLU THR GLY ALA SER LEU VAL VAL PRO CYS SEQRES 11 B 392 TYR ASP THR SER LEU TYR PHE ASP ASP LEU HIS LEU ALA SEQRES 12 B 392 ASP GLU ARG ALA ALA VAL ALA LEU MET GLN GLU GLU ALA SEQRES 13 B 392 MET GLN GLY TYR ALA LYS GLY GLN ARG HIS PHE LYS ILE SEQRES 14 B 392 LYS VAL GLY ARG GLY GLY ARG HIS MET PRO LEU TRP GLU SEQRES 15 B 392 GLY THR LYS ARG ASP ILE ALA ILE VAL ARG GLY ILE SER SEQRES 16 B 392 GLU VAL ALA GLY PRO ALA GLY LYS ILE MET ILE ASP ALA SEQRES 17 B 392 ASN ASN ALA TYR ASN LEU ASN LEU THR LYS GLU VAL LEU SEQRES 18 B 392 ALA ALA LEU SER ASP VAL ASN LEU TYR TRP LEU GLU GLU SEQRES 19 B 392 ALA PHE HIS GLU ASP GLU ALA LEU TYR GLU ASP LEU LYS SEQRES 20 B 392 GLU TRP LEU GLY GLN ARG GLY GLN ASN VAL LEU ILE ALA SEQRES 21 B 392 ASP GLY GLU GLY LEU ALA SER PRO HIS LEU ILE GLU TRP SEQRES 22 B 392 ALA THR ARG GLY ARG VAL ASP VAL LEU GLN TYR ASP ILE SEQRES 23 B 392 ILE TRP PRO GLY PHE THR HIS TRP MET GLU LEU GLY GLU SEQRES 24 B 392 LYS LEU ASP ALA HIS GLY LEU ARG SER ALA PRO HIS CYS SEQRES 25 B 392 TYR GLY ASN ALA TYR GLY ILE TYR ALA SER GLY HIS LEU SEQRES 26 B 392 SER ALA ALA VAL ARG ASN PHE GLU PHE VAL GLU TYR ASP SEQRES 27 B 392 ASP ILE THR ILE GLU GLY MET ASP VAL SER GLY TYR ARG SEQRES 28 B 392 ILE GLU ASN GLY GLU ILE HIS VAL PRO ALA THR PRO GLY SEQRES 29 B 392 PHE GLY ILE VAL PHE ASP ASP GLU LEU VAL THR TYR LEU SEQRES 30 B 392 ILE ASN ARG SER GLY TRP SER GLU GLY HIS HIS HIS HIS SEQRES 31 B 392 HIS HIS HET MG A 393 1 HET MG A 394 1 HET TAR A 395 10 HET MG B 393 1 HET MG B 394 1 HET TAR B 395 10 HETNAM MG MAGNESIUM ION HETNAM TAR D(-)-TARTARIC ACID FORMUL 3 MG 4(MG 2+) FORMUL 5 TAR 2(C4 H6 O6) FORMUL 9 HOH *316(H2 O) HELIX 1 1 THR A 65 ASP A 71 1 7 HELIX 2 2 ARG A 76 PHE A 81 5 6 HELIX 3 3 ARG A 88 ALA A 90 5 3 HELIX 4 4 TYR A 91 GLY A 108 1 18 HELIX 5 5 PRO A 110 SER A 116 1 7 HELIX 6 6 ASP A 144 LYS A 162 1 19 HELIX 7 7 GLY A 172 ARG A 176 5 5 HELIX 8 8 PRO A 179 GLY A 199 1 21 HELIX 9 9 ASN A 213 LEU A 224 1 12 HELIX 10 10 ASP A 239 GLY A 254 1 16 HELIX 11 11 HIS A 269 ARG A 276 1 8 HELIX 12 12 GLY A 290 HIS A 304 1 15 HELIX 13 13 ALA A 316 SER A 326 1 11 HELIX 14 14 ALA A 327 VAL A 329 5 3 HELIX 15 15 ASP A 370 SER A 381 1 12 HELIX 16 16 THR B 65 ASP B 71 1 7 HELIX 17 17 ARG B 76 PHE B 81 1 6 HELIX 18 18 ARG B 88 ALA B 90 5 3 HELIX 19 19 TYR B 91 GLY B 108 1 18 HELIX 20 20 PRO B 110 VAL B 115 1 6 HELIX 21 21 ASP B 144 ALA B 161 1 18 HELIX 22 22 GLY B 172 HIS B 177 1 6 HELIX 23 23 PRO B 179 GLY B 199 1 21 HELIX 24 24 ASN B 213 LEU B 224 1 12 HELIX 25 25 ASP B 239 GLY B 254 1 16 HELIX 26 26 HIS B 269 ARG B 276 1 8 HELIX 27 27 GLY B 290 HIS B 304 1 15 HELIX 28 28 ALA B 316 SER B 326 1 11 HELIX 29 29 ALA B 327 VAL B 329 5 3 HELIX 30 30 ASP B 370 GLY B 382 1 13 SHEET 1 A 4 GLN A 55 SER A 60 0 SHEET 2 A 4 GLY A 40 ILE A 52 -1 N ALA A 48 O GLY A 59 SHEET 3 A 4 VAL A 14 ALA A 30 -1 N ALA A 20 O ILE A 47 SHEET 4 A 4 ILE A 340 ILE A 342 -1 O THR A 341 N GLU A 25 SHEET 1 B 4 GLN A 55 SER A 60 0 SHEET 2 B 4 GLY A 40 ILE A 52 -1 N ALA A 48 O GLY A 59 SHEET 3 B 4 VAL A 14 ALA A 30 -1 N ALA A 20 O ILE A 47 SHEET 4 B 4 TRP A 383 GLY A 386 -1 O GLU A 385 N ILE A 17 SHEET 1 C 8 ARG A 307 SER A 308 0 SHEET 2 C 8 VAL A 281 LEU A 282 1 N LEU A 282 O ARG A 307 SHEET 3 C 8 LEU A 258 ASP A 261 1 N ILE A 259 O VAL A 281 SHEET 4 C 8 LEU A 229 GLU A 233 1 N LEU A 232 O LEU A 258 SHEET 5 C 8 ILE A 204 ASP A 207 1 N ILE A 206 O GLU A 233 SHEET 6 C 8 PHE A 167 LYS A 170 1 N ILE A 169 O MET A 205 SHEET 7 C 8 LEU A 126 LEU A 135 1 N LEU A 135 O LYS A 170 SHEET 8 C 8 VAL A 335 TYR A 337 1 O TYR A 337 N TYR A 131 SHEET 1 D 9 ARG A 307 SER A 308 0 SHEET 2 D 9 VAL A 281 LEU A 282 1 N LEU A 282 O ARG A 307 SHEET 3 D 9 LEU A 258 ASP A 261 1 N ILE A 259 O VAL A 281 SHEET 4 D 9 LEU A 229 GLU A 233 1 N LEU A 232 O LEU A 258 SHEET 5 D 9 ILE A 204 ASP A 207 1 N ILE A 206 O GLU A 233 SHEET 6 D 9 PHE A 167 LYS A 170 1 N ILE A 169 O MET A 205 SHEET 7 D 9 LEU A 126 LEU A 135 1 N LEU A 135 O LYS A 170 SHEET 8 D 9 GLU A 356 VAL A 359 -1 O ILE A 357 N VAL A 128 SHEET 9 D 9 ARG A 351 GLU A 353 -1 N ARG A 351 O HIS A 358 SHEET 1 E 2 MET A 345 ASP A 346 0 SHEET 2 E 2 VAL A 368 PHE A 369 -1 O VAL A 368 N ASP A 346 SHEET 1 F 4 GLN B 55 SER B 60 0 SHEET 2 F 4 GLY B 40 ILE B 52 -1 N ALA B 48 O GLY B 59 SHEET 3 F 4 VAL B 14 ALA B 30 -1 N GLU B 15 O THR B 51 SHEET 4 F 4 ILE B 340 ILE B 342 -1 O THR B 341 N GLU B 25 SHEET 1 G 8 ARG B 307 SER B 308 0 SHEET 2 G 8 VAL B 281 LEU B 282 1 N LEU B 282 O ARG B 307 SHEET 3 G 8 LEU B 258 ASP B 261 1 N ASP B 261 O VAL B 281 SHEET 4 G 8 LEU B 229 GLU B 233 1 N LEU B 232 O ALA B 260 SHEET 5 G 8 ILE B 204 ASP B 207 1 N ILE B 206 O GLU B 233 SHEET 6 G 8 PHE B 167 LYS B 170 1 N ILE B 169 O MET B 205 SHEET 7 G 8 LEU B 126 LEU B 135 1 N ASP B 132 O LYS B 168 SHEET 8 G 8 VAL B 335 TYR B 337 1 O TYR B 337 N THR B 133 SHEET 1 H 9 ARG B 307 SER B 308 0 SHEET 2 H 9 VAL B 281 LEU B 282 1 N LEU B 282 O ARG B 307 SHEET 3 H 9 LEU B 258 ASP B 261 1 N ASP B 261 O VAL B 281 SHEET 4 H 9 LEU B 229 GLU B 233 1 N LEU B 232 O ALA B 260 SHEET 5 H 9 ILE B 204 ASP B 207 1 N ILE B 206 O GLU B 233 SHEET 6 H 9 PHE B 167 LYS B 170 1 N ILE B 169 O MET B 205 SHEET 7 H 9 LEU B 126 LEU B 135 1 N ASP B 132 O LYS B 168 SHEET 8 H 9 GLU B 356 VAL B 359 -1 O ILE B 357 N VAL B 128 SHEET 9 H 9 ARG B 351 GLU B 353 -1 N ARG B 351 O HIS B 358 SHEET 1 I 2 MET B 345 ASP B 346 0 SHEET 2 I 2 VAL B 368 PHE B 369 -1 O VAL B 368 N ASP B 346 LINK OD2 ASP A 207 MG MG A 393 1555 1555 2.15 LINK OE2 GLU A 233 MG MG A 393 1555 1555 2.06 LINK OE2 GLU A 234 MG MG A 394 1555 1555 2.14 LINK OE2 GLU A 238 MG MG A 394 1555 1555 2.16 LINK OD1 ASP A 261 MG MG A 394 1555 1555 2.11 LINK OE2 GLU A 263 MG MG A 393 1555 1555 2.19 LINK MG MG A 393 O11 TAR A 395 1555 1555 2.13 LINK MG MG A 393 O2 TAR A 395 1555 1555 2.37 LINK MG MG A 393 O HOH A 606 1555 1555 2.17 LINK MG MG A 394 O HOH A 607 1555 1555 2.22 LINK MG MG A 394 O HOH A 608 1555 1555 2.11 LINK MG MG A 394 O HOH A 609 1555 1555 2.17 LINK OD2 ASP B 207 MG MG B 393 1555 1555 2.20 LINK OE2 GLU B 233 MG MG B 393 1555 1555 2.18 LINK OE2 GLU B 234 MG MG B 394 1555 1555 2.15 LINK OE2 GLU B 238 MG MG B 394 1555 1555 2.14 LINK OD1 ASP B 261 MG MG B 394 1555 1555 2.12 LINK OE2 GLU B 263 MG MG B 393 1555 1555 2.13 LINK MG MG B 393 O11 TAR B 395 1555 1555 2.25 LINK MG MG B 393 O2 TAR B 395 1555 1555 2.35 LINK MG MG B 393 O HOH B 478 1555 1555 2.08 LINK MG MG B 394 O HOH B 479 1555 1555 2.22 LINK MG MG B 394 O HOH B 480 1555 1555 2.25 LINK MG MG B 394 O HOH B 481 1555 1555 2.21 CISPEP 1 TRP A 288 PRO A 289 0 13.59 CISPEP 2 TRP B 288 PRO B 289 0 15.05 SITE 1 AC1 5 ASP A 207 GLU A 233 GLU A 263 TAR A 395 SITE 2 AC1 5 HOH A 606 SITE 1 AC2 6 GLU A 234 GLU A 238 ASP A 261 HOH A 607 SITE 2 AC2 6 HOH A 608 HOH A 609 SITE 1 AC3 15 ASN A 33 TYR A 136 LYS A 168 LYS A 170 SITE 2 AC3 15 ASP A 207 ASN A 209 GLU A 233 GLU A 263 SITE 3 AC3 15 HIS A 311 TYR A 313 GLU A 336 MG A 393 SITE 4 AC3 15 HOH A 435 HOH A 521 HOH A 557 SITE 1 AC4 5 ASP B 207 GLU B 233 GLU B 263 TAR B 395 SITE 2 AC4 5 HOH B 478 SITE 1 AC5 6 GLU B 234 GLU B 238 ASP B 261 HOH B 479 SITE 2 AC5 6 HOH B 480 HOH B 481 SITE 1 AC6 13 ASN B 33 TYR B 136 LYS B 168 LYS B 170 SITE 2 AC6 13 ASP B 207 ASN B 209 GLU B 233 GLU B 263 SITE 3 AC6 13 HIS B 311 TYR B 313 GLU B 336 MG B 393 SITE 4 AC6 13 HOH B 425 CRYST1 158.859 66.051 75.664 90.00 95.48 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006295 0.000000 0.000604 0.00000 SCALE2 0.000000 0.015140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013277 0.00000 MASTER 376 0 6 30 50 0 16 6 0 0 0 62 END