HEADER HYDROLASE/DNA 31-AUG-10 3OOL TITLE I-SCEI COMPLEXED WITH C/G+4 DNA SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTRON ENCODED ENDONUCLEASE I-SCEI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 21S RRNA INTRON MATURASE, HOMING ENDONUCLEASE OMEGA; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*CP*GP*GP COMPND 9 *GP*TP*AP*AP*TP*AP*C)-3'; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: TOP STRAND OF I-SCEI C/G+4 DNA TARGET; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*GP*GP*TP*TP*AP*TP*CP*CP COMPND 15 *CP*TP*AP*GP*CP*GP*T)-3'; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: BOTTOM STRAND OF I-SCEI C/G+4 DNA TARGET SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SCEI,OMEGA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS HOMING ENDONUCLEASE, INTRON HOMING, LAGLIDADG, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.JOSHI,J.-H.CHEN,B.L.GOLDEN,F.S.GIMBLE REVDAT 4 24-JAN-18 3OOL 1 AUTHOR REVDAT 3 08-NOV-17 3OOL 1 REMARK REVDAT 2 12-JAN-11 3OOL 1 JRNL REVDAT 1 17-NOV-10 3OOL 0 JRNL AUTH R.JOSHI,K.K.HO,K.TENNEY,J.H.CHEN,B.L.GOLDEN,F.S.GIMBLE JRNL TITL EVOLUTION OF I-SCEI HOMING ENDONUCLEASES WITH INCREASED DNA JRNL TITL 2 RECOGNITION SITE SPECIFICITY. JRNL REF J.MOL.BIOL. V. 405 185 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21029741 JRNL DOI 10.1016/J.JMB.2010.10.029 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 15880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1854 REMARK 3 NUCLEIC ACID ATOMS : 984 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3003 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4265 ; 1.146 ; 2.370 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 5.381 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;34.034 ;25.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;15.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1924 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1113 ; 0.262 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1807 ; 0.491 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1890 ; 0.591 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2458 ; 0.959 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 25 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5350 17.9475 -13.8270 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.1773 REMARK 3 T33: 0.2885 T12: -0.0185 REMARK 3 T13: -0.0522 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 3.4293 L22: 3.8853 REMARK 3 L33: 8.3174 L12: 1.4138 REMARK 3 L13: -3.8136 L23: -2.4742 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.0682 S13: -0.2491 REMARK 3 S21: -0.5114 S22: -0.1527 S23: -0.0194 REMARK 3 S31: 0.1739 S32: 0.3802 S33: 0.1236 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 25 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0314 16.3866 -14.1068 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.1520 REMARK 3 T33: 0.2749 T12: -0.0404 REMARK 3 T13: -0.0412 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 3.0471 L22: 3.4316 REMARK 3 L33: 5.2612 L12: 0.6056 REMARK 3 L13: -2.2935 L23: -2.4512 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.1561 S13: -0.1001 REMARK 3 S21: -0.4352 S22: -0.2383 S23: -0.2788 REMARK 3 S31: 0.1269 S32: 0.5112 S33: 0.2340 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1386 25.8634 -8.3828 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.2097 REMARK 3 T33: 0.2270 T12: -0.0355 REMARK 3 T13: -0.0667 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.4756 L22: 1.9806 REMARK 3 L33: 4.2273 L12: -0.3358 REMARK 3 L13: -0.9218 L23: -1.1174 REMARK 3 S TENSOR REMARK 3 S11: 0.0961 S12: -0.1307 S13: 0.0312 REMARK 3 S21: 0.0614 S22: -0.0278 S23: 0.1050 REMARK 3 S31: -0.4119 S32: -0.0707 S33: -0.0682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1R7M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400,CACL2,NAOAC,DTT, PH 4.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.59200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.96900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.59200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.96900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 226 REMARK 465 THR A 227 REMARK 465 ILE A 228 REMARK 465 SER A 229 REMARK 465 SER A 230 REMARK 465 GLU A 231 REMARK 465 THR A 232 REMARK 465 PHE A 233 REMARK 465 LEU A 234 REMARK 465 LYS A 235 REMARK 465 DC C 1 REMARK 465 DG D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C 17 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT D 5 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC D 10 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA D 15 O4' - C1' - N9 ANGL. DEV. = -6.2 DEGREES REMARK 500 DA D 15 C3' - O3' - P ANGL. DEV. = 8.9 DEGREES REMARK 500 DC D 18 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT D 20 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG D 22 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT D 25 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 51 -166.87 -76.76 REMARK 500 GLU A 52 38.07 -94.23 REMARK 500 TYR A 132 -36.01 -133.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 236 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA C 14 OP1 REMARK 620 2 DC D 17 OP1 95.6 REMARK 620 3 ASP A 44 OD2 91.4 112.8 REMARK 620 4 ASP A 144 O 159.1 104.3 86.8 REMARK 620 5 HOH A 243 O 104.1 89.9 151.4 70.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 26 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 15 OP1 REMARK 620 2 DT D 16 OP1 97.0 REMARK 620 3 HOH D 29 O 100.1 88.4 REMARK 620 4 HOH C 31 O 85.6 177.3 91.8 REMARK 620 5 HOH C 33 O 93.7 106.4 158.4 72.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 237 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 15 OP2 REMARK 620 2 HOH A 253 O 143.6 REMARK 620 3 HOH D 31 O 113.9 100.1 REMARK 620 4 GLY A 43 O 85.3 70.8 149.0 REMARK 620 5 ASP A 145 OD1 124.5 80.8 65.0 84.0 REMARK 620 6 ASP A 44 OD1 61.0 134.8 89.6 78.4 63.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 26 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OOR RELATED DB: PDB DBREF 3OOL A 1 235 UNP P03882 SCE1_YEAST 1 235 DBREF 3OOL C 1 25 PDB 3OOL 3OOL 1 25 DBREF 3OOL D 1 25 PDB 3OOL 3OOL 1 25 SEQRES 1 A 237 MET HIS MET LYS ASN ILE LYS LYS ASN GLN VAL MET ASN SEQRES 2 A 237 LEU GLY PRO ASN SER LYS LEU LEU LYS GLU TYR LYS SER SEQRES 3 A 237 GLN LEU ILE GLU LEU ASN ILE GLU GLN PHE GLU ALA GLY SEQRES 4 A 237 ILE GLY LEU ILE LEU GLY ASP ALA TYR ILE ARG SER ARG SEQRES 5 A 237 ASP GLU GLY LYS THR TYR CYS MET GLN PHE GLU TRP LYS SEQRES 6 A 237 ASN LYS ALA TYR MET ASP HIS VAL CYS LEU LEU TYR ASP SEQRES 7 A 237 GLN TRP VAL LEU SER PRO PRO HIS LYS LYS GLU ARG VAL SEQRES 8 A 237 ASN HIS LEU GLY ASN LEU VAL ILE THR TRP GLY ALA GLN SEQRES 9 A 237 THR PHE LYS HIS GLN ALA PHE ASN LYS LEU ALA ASN LEU SEQRES 10 A 237 PHE ILE VAL ASN ASN LYS LYS THR ILE PRO ASN ASN LEU SEQRES 11 A 237 VAL GLU ASN TYR LEU THR PRO MET SER LEU ALA TYR TRP SEQRES 12 A 237 PHE MET ASP ASP GLY GLY LYS TRP ASP TYR ASN LYS ASN SEQRES 13 A 237 SER THR ASN LYS SER ILE VAL LEU ASN THR GLN SER PHE SEQRES 14 A 237 THR PHE GLU GLU VAL GLU TYR LEU VAL LYS GLY LEU ARG SEQRES 15 A 237 ASN LYS PHE GLN LEU ASN CYS TYR VAL LYS ILE ASN LYS SEQRES 16 A 237 ASN LYS PRO ILE ILE TYR ILE ASP SER MET SER TYR LEU SEQRES 17 A 237 ILE PHE TYR ASN LEU ILE LYS PRO TYR LEU ILE PRO GLN SEQRES 18 A 237 MET MET TYR LYS LEU PRO ASN THR ILE SER SER GLU THR SEQRES 19 A 237 PHE LEU LYS SEQRES 1 C 25 DC DA DC DG DC DT DA DG DG DG DA DT DA SEQRES 2 C 25 DA DC DC DG DG DG DT DA DA DT DA DC SEQRES 1 D 25 DG DG DT DA DT DT DA DC DC DC DG DG DT SEQRES 2 D 25 DT DA DT DC DC DC DT DA DG DC DG DT HET CA A 236 1 HET CA A 237 1 HET CA C 26 1 HETNAM CA CALCIUM ION FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *36(H2 O) HELIX 1 1 LYS A 5 VAL A 9 5 5 HELIX 2 2 SER A 16 LEU A 26 1 11 HELIX 3 3 ASN A 30 GLY A 43 1 14 HELIX 4 4 ASN A 64 TYR A 75 1 12 HELIX 5 5 ASP A 76 VAL A 79 5 4 HELIX 6 6 HIS A 106 ALA A 108 5 3 HELIX 7 7 PHE A 109 ILE A 117 1 9 HELIX 8 8 ASN A 127 LEU A 133 1 7 HELIX 9 9 THR A 134 ASP A 145 1 12 HELIX 10 10 THR A 168 GLN A 184 1 17 HELIX 11 11 SER A 204 LYS A 213 1 10 HELIX 12 12 ILE A 217 LEU A 224 5 8 SHEET 1 A 4 TYR A 46 ARG A 48 0 SHEET 2 A 4 CYS A 57 TRP A 62 -1 O GLN A 59 N TYR A 46 SHEET 3 A 4 LEU A 95 GLN A 102 -1 O ALA A 101 N PHE A 60 SHEET 4 A 4 HIS A 84 VAL A 89 -1 N HIS A 84 O GLY A 100 SHEET 1 B 4 GLY A 146 LYS A 148 0 SHEET 2 B 4 ILE A 160 LEU A 162 -1 O VAL A 161 N GLY A 147 SHEET 3 B 4 LYS A 195 ILE A 200 -1 O ILE A 200 N ILE A 160 SHEET 4 B 4 CYS A 187 ASN A 192 -1 N TYR A 188 O TYR A 199 LINK OP1 DA C 14 CA CA A 236 1555 1555 2.14 LINK OP1 DC C 15 CA CA C 26 1555 1555 2.22 LINK OP1 DC D 17 CA CA A 236 1555 1555 2.28 LINK OD2 ASP A 44 CA CA A 236 1555 1555 2.31 LINK OP2 DC C 15 CA CA A 237 1555 1555 2.31 LINK O ASP A 144 CA CA A 236 1555 1555 2.34 LINK OP1 DT D 16 CA CA C 26 1555 1555 2.36 LINK CA CA C 26 O HOH D 29 1555 1555 2.38 LINK CA CA A 236 O HOH A 243 1555 1555 2.41 LINK CA CA A 237 O HOH A 253 1555 1555 2.43 LINK CA CA A 237 O HOH D 31 1555 1555 2.45 LINK CA CA C 26 O HOH C 31 1555 1555 2.54 LINK CA CA C 26 O HOH C 33 1555 1555 2.56 LINK O GLY A 43 CA CA A 237 1555 1555 2.64 LINK OD1 ASP A 145 CA CA A 237 1555 1555 2.73 LINK OD1 ASP A 44 CA CA A 237 1555 1555 3.00 SITE 1 AC1 5 ASP A 44 ASP A 144 HOH A 243 DA C 14 SITE 2 AC1 5 DC D 17 SITE 1 AC2 6 GLY A 43 ASP A 44 ASP A 145 HOH A 253 SITE 2 AC2 6 DC C 15 HOH D 31 SITE 1 AC3 5 DC C 15 HOH C 31 HOH C 33 DT D 16 SITE 2 AC3 5 HOH D 29 CRYST1 129.184 49.938 63.360 90.00 107.54 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007741 0.000000 0.002447 0.00000 SCALE2 0.000000 0.020025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016553 0.00000 MASTER 414 0 3 12 8 0 6 6 0 0 0 23 END