HEADER SIGNALING PROTEIN 25-AUG-10 3OL2 TITLE RECEPTOR-LIGAND STRUCTURE OF HUMAN SEMAPHORIN 4D WITH PLEXIN B1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEMAPHORIN-4D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS; COMPND 5 SYNONYM: BB18, A8, GR3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PLEXIN-B1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAINSL (1-2); COMPND 11 SYNONYM: SEMAPHORIN RECEPTOR SEP; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEMA4D, C9ORF164, CD100, SEMAJ; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: PLXNB1, KIAA0407, PLXN5, SEP; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS BETA-PROPELLER, SIGNALLING, EXTACELLULAR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.J.C.JANSSEN,R.A.ROBINSON,F.PEREZ-BRANGULI,C.H.BELL,C.J.MITCHELL, AUTHOR 2 C.SIEBOLD,E.Y.JONES REVDAT 4 29-JUL-20 3OL2 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 24-JAN-18 3OL2 1 AUTHOR REVDAT 2 05-JAN-11 3OL2 1 JRNL REVDAT 1 13-OCT-10 3OL2 0 JRNL AUTH B.J.JANSSEN,R.A.ROBINSON,F.PEREZ-BRANGULI,C.H.BELL, JRNL AUTH 2 K.J.MITCHELL,C.SIEBOLD,E.Y.JONES JRNL TITL STRUCTURAL BASIS OF SEMAPHORIN-PLEXIN SIGNALLING. JRNL REF NATURE V. 467 1118 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20877282 JRNL DOI 10.1038/NATURE09468 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2629 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2548 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2515 REMARK 3 BIN R VALUE (WORKING SET) : 0.2487 REMARK 3 BIN FREE R VALUE : 0.3926 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.34 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 114 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 215 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.90270 REMARK 3 B22 (A**2) : 0.67430 REMARK 3 B33 (A**2) : 15.22830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.415 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9074 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12378 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2946 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 215 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1477 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9074 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1197 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9896 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.28 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.63 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.11 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|24 - A|501 A|1000 - A|9001 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.2440 -23.6960 65.3999 REMARK 3 T TENSOR REMARK 3 T11: -0.0519 T22: -0.1633 REMARK 3 T33: -0.1418 T12: -0.0688 REMARK 3 T13: 0.1219 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.4809 L22: 0.8446 REMARK 3 L33: 2.1952 L12: -0.1186 REMARK 3 L13: -0.5650 L23: 0.3000 REMARK 3 S TENSOR REMARK 3 S11: -0.2444 S12: -0.0911 S13: -0.2763 REMARK 3 S21: 0.1896 S22: 0.0962 S23: 0.1704 REMARK 3 S31: 0.4173 S32: -0.4157 S33: 0.1482 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|502 - A|552 } REMARK 3 ORIGIN FOR THE GROUP (A): -26.7491 -18.3879 93.2957 REMARK 3 T TENSOR REMARK 3 T11: -0.0054 T22: 0.3040 REMARK 3 T33: -0.3040 T12: -0.1012 REMARK 3 T13: 0.1520 T23: 0.0847 REMARK 3 L TENSOR REMARK 3 L11: 3.6899 L22: 0.0054 REMARK 3 L33: 1.0612 L12: 0.7924 REMARK 3 L13: -2.8180 L23: -0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.1243 S13: -0.0323 REMARK 3 S21: -0.0399 S22: -0.0450 S23: 0.2045 REMARK 3 S31: 0.0866 S32: -0.0917 S33: 0.0723 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|553 - A|648 } REMARK 3 ORIGIN FOR THE GROUP (A): -13.6636 -1.3135 110.8440 REMARK 3 T TENSOR REMARK 3 T11: -0.1606 T22: 0.3040 REMARK 3 T33: -0.3040 T12: 0.0560 REMARK 3 T13: 0.1487 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.1067 L22: 1.9117 REMARK 3 L33: 5.8620 L12: 0.0182 REMARK 3 L13: -2.6066 L23: 1.4913 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.3073 S13: 0.0486 REMARK 3 S21: -0.0690 S22: -0.0626 S23: -0.0134 REMARK 3 S31: -0.1129 S32: 0.2651 S33: 0.0282 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|23 - B|487 B|2000 - B|2002 } REMARK 3 ORIGIN FOR THE GROUP (A): 22.7015 -20.8264 29.0035 REMARK 3 T TENSOR REMARK 3 T11: -0.0291 T22: -0.2040 REMARK 3 T33: -0.0105 T12: -0.0669 REMARK 3 T13: 0.0616 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.9115 L22: 0.6769 REMARK 3 L33: 2.1222 L12: -0.2421 REMARK 3 L13: -0.5875 L23: 0.1539 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: -0.0624 S13: 0.2267 REMARK 3 S21: -0.0310 S22: 0.1278 S23: -0.0563 REMARK 3 S31: 0.0047 S32: -0.0844 S33: -0.1860 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { B|488 - B|533 } REMARK 3 ORIGIN FOR THE GROUP (A): 54.6079 -19.1792 9.3861 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: -0.0086 REMARK 3 T33: -0.0241 T12: -0.0655 REMARK 3 T13: 0.1520 T23: -0.1304 REMARK 3 L TENSOR REMARK 3 L11: 3.7005 L22: 0.1263 REMARK 3 L33: 5.6079 L12: 0.1975 REMARK 3 L13: -0.2292 L23: 2.8967 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: 0.0960 S13: 0.0674 REMARK 3 S21: 0.0993 S22: -0.0502 S23: -0.2456 REMARK 3 S31: 0.0205 S32: 0.2600 S33: -0.0290 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS,0.2 M CALCIUM ACETATE, 6% REMARK 280 V/V GLYCEROL, 20% PEG3000, PH 7, VAPOR DIFFUSION, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.71800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 241.05950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.71800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 241.05950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.71800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 241.05950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.71800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 241.05950 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 241.05950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 241.05950 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 241.05950 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 241.05950 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.71800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.71800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 86.71800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 86.71800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN THE NATIVE FORM HUMAN SEMAPHORIN 4D EXISTS AS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 SER A 220 REMARK 465 PRO A 221 REMARK 465 ASP A 222 REMARK 465 SER A 223 REMARK 465 PRO A 224 REMARK 465 ASP A 225 REMARK 465 LYS A 556 REMARK 465 SER A 557 REMARK 465 LYS A 558 REMARK 465 GLY A 559 REMARK 465 SER A 560 REMARK 465 VAL A 649 REMARK 465 PRO A 650 REMARK 465 LYS A 651 REMARK 465 PRO A 652 REMARK 465 VAL A 653 REMARK 465 VAL A 654 REMARK 465 ALA A 655 REMARK 465 PRO A 656 REMARK 465 THR A 657 REMARK 465 LEU A 658 REMARK 465 SER A 659 REMARK 465 VAL A 660 REMARK 465 VAL A 661 REMARK 465 GLN A 662 REMARK 465 THR A 663 REMARK 465 GLU A 664 REMARK 465 GLY A 665 REMARK 465 SER A 666 REMARK 465 ARG A 667 REMARK 465 ILE A 668 REMARK 465 ALA A 669 REMARK 465 THR A 670 REMARK 465 LYS A 671 REMARK 465 VAL A 672 REMARK 465 LEU A 673 REMARK 465 VAL A 674 REMARK 465 ALA A 675 REMARK 465 SER A 676 REMARK 465 THR A 677 REMARK 465 LYS A 678 REMARK 465 HIS A 679 REMARK 465 HIS A 680 REMARK 465 HIS A 681 REMARK 465 HIS A 682 REMARK 465 HIS A 683 REMARK 465 HIS A 684 REMARK 465 GLU B 17 REMARK 465 THR B 18 REMARK 465 GLY B 19 REMARK 465 LEU B 20 REMARK 465 GLN B 21 REMARK 465 PRO B 22 REMARK 465 ARG B 175 REMARK 465 GLY B 176 REMARK 465 VAL B 177 REMARK 465 ARG B 285 REMARK 465 GLU B 286 REMARK 465 VAL B 287 REMARK 465 PRO B 303 REMARK 465 THR B 304 REMARK 465 VAL B 305 REMARK 465 GLY B 306 REMARK 465 ARG B 307 REMARK 465 ARG B 516 REMARK 465 GLY B 517 REMARK 465 GLN B 518 REMARK 465 GLY B 519 REMARK 465 LEU B 534 REMARK 465 GLN B 535 REMARK 465 GLY B 536 REMARK 465 THR B 537 REMARK 465 LYS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 334 O5 NAG H 1 2.00 REMARK 500 ND2 ASN A 419 O5 NAG F 1 2.02 REMARK 500 ND2 ASN A 191 O5 NAG G 1 2.07 REMARK 500 ND2 ASN A 49 O5 NAG C 1 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 351 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 26 -168.65 -67.23 REMARK 500 SER A 56 -179.98 -66.81 REMARK 500 LYS A 59 -2.94 68.30 REMARK 500 ALA A 66 -164.55 -114.93 REMARK 500 ASN A 77 75.52 -159.13 REMARK 500 TRP A 87 65.61 -152.89 REMARK 500 THR A 106 -79.31 -114.12 REMARK 500 CYS A 108 46.22 -85.06 REMARK 500 ASN A 149 60.92 36.64 REMARK 500 THR A 177 -161.38 -166.08 REMARK 500 SER A 193 -44.52 84.01 REMARK 500 ASP A 285 -5.22 -58.84 REMARK 500 ASN A 409 28.75 48.70 REMARK 500 LEU A 454 -167.31 -69.37 REMARK 500 GLU A 455 96.83 -61.44 REMARK 500 CYS A 503 -38.31 -34.46 REMARK 500 HIS A 533 37.07 76.43 REMARK 500 GLN A 534 -59.49 -159.27 REMARK 500 GLU A 536 56.62 -103.72 REMARK 500 GLU A 616 -57.36 -22.85 REMARK 500 LYS A 631 -92.12 -119.58 REMARK 500 THR B 43 -70.17 -60.10 REMARK 500 VAL B 83 99.97 -66.86 REMARK 500 GLN B 116 14.94 59.46 REMARK 500 ASN B 146 32.73 -80.93 REMARK 500 PRO B 148 -147.93 -67.78 REMARK 500 ALA B 149 -13.88 54.41 REMARK 500 GLU B 201 32.74 -78.64 REMARK 500 GLU B 202 -27.53 69.60 REMARK 500 SER B 215 71.36 45.44 REMARK 500 ALA B 226 30.83 -94.69 REMARK 500 ARG B 242 27.55 48.69 REMARK 500 ALA B 347 106.80 60.23 REMARK 500 THR B 351 136.43 153.15 REMARK 500 GLU B 352 75.12 77.15 REMARK 500 ASN B 361 69.70 -67.24 REMARK 500 GLN B 448 106.36 -166.80 REMARK 500 ASP B 456 39.08 -67.53 REMARK 500 SER B 481 33.88 -142.08 REMARK 500 PRO B 529 -74.43 -73.48 REMARK 500 LEU B 531 -179.86 73.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OKT RELATED DB: PDB REMARK 900 MOUSE PLEXIN A2, EXTRACELLULAR DOMAINS 1-4 REMARK 900 RELATED ID: 1OLZ RELATED DB: PDB REMARK 900 SOLUBLE EXTRACELLULAR FRAGMENT, RESIDUES 22-677 OF SEMA4D DBREF 3OL2 A 22 677 UNP Q92854 SEM4D_HUMAN 22 677 DBREF 3OL2 B 20 535 UNP O43157 PLXB1_HUMAN 20 535 SEQADV 3OL2 LYS A 678 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 679 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 680 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 681 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 682 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 683 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 684 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 GLU B 17 UNP O43157 CLONING ARTIFACT SEQADV 3OL2 THR B 18 UNP O43157 CLONING ARTIFACT SEQADV 3OL2 GLY B 19 UNP O43157 CLONING ARTIFACT SEQADV 3OL2 GLY B 536 UNP O43157 EXPRESSION TAG SEQADV 3OL2 THR B 537 UNP O43157 EXPRESSION TAG SEQADV 3OL2 LYS B 538 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 539 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 540 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 541 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 542 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 543 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 544 UNP O43157 EXPRESSION TAG SEQRES 1 A 663 MET ALA PHE ALA PRO ILE PRO ARG ILE THR TRP GLU HIS SEQRES 2 A 663 ARG GLU VAL HIS LEU VAL GLN PHE HIS GLU PRO ASP ILE SEQRES 3 A 663 TYR ASN TYR SER ALA LEU LEU LEU SER GLU ASP LYS ASP SEQRES 4 A 663 THR LEU TYR ILE GLY ALA ARG GLU ALA VAL PHE ALA VAL SEQRES 5 A 663 ASN ALA LEU ASN ILE SER GLU LYS GLN HIS GLU VAL TYR SEQRES 6 A 663 TRP LYS VAL SER GLU ASP LYS LYS ALA LYS CYS ALA GLU SEQRES 7 A 663 LYS GLY LYS SER LYS GLN THR GLU CYS LEU ASN TYR ILE SEQRES 8 A 663 ARG VAL LEU GLN PRO LEU SER ALA THR SER LEU TYR VAL SEQRES 9 A 663 CYS GLY THR ASN ALA PHE GLN PRO ALA CYS ASP HIS LEU SEQRES 10 A 663 ASN LEU THR SER PHE LYS PHE LEU GLY LYS ASN GLU ASP SEQRES 11 A 663 GLY LYS GLY ARG CYS PRO PHE ASP PRO ALA HIS SER TYR SEQRES 12 A 663 THR SER VAL MET VAL ASP GLY GLU LEU TYR SER GLY THR SEQRES 13 A 663 SER TYR ASN PHE LEU GLY SER GLU PRO ILE ILE SER ARG SEQRES 14 A 663 ASN SER SER HIS SER PRO LEU ARG THR GLU TYR ALA ILE SEQRES 15 A 663 PRO TRP LEU ASN GLU PRO SER PHE VAL PHE ALA ASP VAL SEQRES 16 A 663 ILE ARG LYS SER PRO ASP SER PRO ASP GLY GLU ASP ASP SEQRES 17 A 663 ARG VAL TYR PHE PHE PHE THR GLU VAL SER VAL GLU TYR SEQRES 18 A 663 GLU PHE VAL PHE ARG VAL LEU ILE PRO ARG ILE ALA ARG SEQRES 19 A 663 VAL CYS LYS GLY ASP GLN GLY GLY LEU ARG THR LEU GLN SEQRES 20 A 663 LYS LYS TRP THR SER PHE LEU LYS ALA ARG LEU ILE CYS SEQRES 21 A 663 SER ARG PRO ASP SER GLY LEU VAL PHE ASN VAL LEU ARG SEQRES 22 A 663 ASP VAL PHE VAL LEU ARG SER PRO GLY LEU LYS VAL PRO SEQRES 23 A 663 VAL PHE TYR ALA LEU PHE THR PRO GLN LEU ASN ASN VAL SEQRES 24 A 663 GLY LEU SER ALA VAL CYS ALA TYR ASN LEU SER THR ALA SEQRES 25 A 663 GLU GLU VAL PHE SER HIS GLY LYS TYR MET GLN SER THR SEQRES 26 A 663 THR VAL GLU GLN SER HIS THR LYS TRP VAL ARG TYR ASN SEQRES 27 A 663 GLY PRO VAL PRO LYS PRO ARG PRO GLY ALA CYS ILE ASP SEQRES 28 A 663 SER GLU ALA ARG ALA ALA ASN TYR THR SER SER LEU ASN SEQRES 29 A 663 LEU PRO ASP LYS THR LEU GLN PHE VAL LYS ASP HIS PRO SEQRES 30 A 663 LEU MET ASP ASP SER VAL THR PRO ILE ASP ASN ARG PRO SEQRES 31 A 663 ARG LEU ILE LYS LYS ASP VAL ASN TYR THR GLN ILE VAL SEQRES 32 A 663 VAL ASP ARG THR GLN ALA LEU ASP GLY THR VAL TYR ASP SEQRES 33 A 663 VAL MET PHE VAL SER THR ASP ARG GLY ALA LEU HIS LYS SEQRES 34 A 663 ALA ILE SER LEU GLU HIS ALA VAL HIS ILE ILE GLU GLU SEQRES 35 A 663 THR GLN LEU PHE GLN ASP PHE GLU PRO VAL GLN THR LEU SEQRES 36 A 663 LEU LEU SER SER LYS LYS GLY ASN ARG PHE VAL TYR ALA SEQRES 37 A 663 GLY SER ASN SER GLY VAL VAL GLN ALA PRO LEU ALA PHE SEQRES 38 A 663 CYS GLY LYS HIS GLY THR CYS GLU ASP CYS VAL LEU ALA SEQRES 39 A 663 ARG ASP PRO TYR CYS ALA TRP SER PRO PRO THR ALA THR SEQRES 40 A 663 CYS VAL ALA LEU HIS GLN THR GLU SER PRO SER ARG GLY SEQRES 41 A 663 LEU ILE GLN GLU MET SER GLY ASP ALA SER VAL CYS PRO SEQRES 42 A 663 ASP LYS SER LYS GLY SER TYR ARG GLN HIS PHE PHE LYS SEQRES 43 A 663 HIS GLY GLY THR ALA GLU LEU LYS CYS SER GLN LYS SER SEQRES 44 A 663 ASN LEU ALA ARG VAL PHE TRP LYS PHE GLN ASN GLY VAL SEQRES 45 A 663 LEU LYS ALA GLU SER PRO LYS TYR GLY LEU MET GLY ARG SEQRES 46 A 663 LYS ASN LEU LEU ILE PHE ASN LEU SER GLU GLY ASP SER SEQRES 47 A 663 GLY VAL TYR GLN CYS LEU SER GLU GLU ARG VAL LYS ASN SEQRES 48 A 663 LYS THR VAL PHE GLN VAL VAL ALA LYS HIS VAL LEU GLU SEQRES 49 A 663 VAL LYS VAL VAL PRO LYS PRO VAL VAL ALA PRO THR LEU SEQRES 50 A 663 SER VAL VAL GLN THR GLU GLY SER ARG ILE ALA THR LYS SEQRES 51 A 663 VAL LEU VAL ALA SER THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 528 GLU THR GLY LEU GLN PRO LEU PRO PRO THR ALA PHE THR SEQRES 2 B 528 PRO ASN GLY THR TYR LEU GLN HIS LEU ALA ARG ASP PRO SEQRES 3 B 528 THR SER GLY THR LEU TYR LEU GLY ALA THR ASN PHE LEU SEQRES 4 B 528 PHE GLN LEU SER PRO GLY LEU GLN LEU GLU ALA THR VAL SEQRES 5 B 528 SER THR GLY PRO VAL LEU ASP SER ARG ASP CYS LEU PRO SEQRES 6 B 528 PRO VAL MET PRO ASP GLU CYS PRO GLN ALA GLN PRO THR SEQRES 7 B 528 ASN ASN PRO ASN GLN LEU LEU LEU VAL SER PRO GLY ALA SEQRES 8 B 528 LEU VAL VAL CYS GLY SER VAL HIS GLN GLY VAL CYS GLU SEQRES 9 B 528 GLN ARG ARG LEU GLY GLN LEU GLU GLN LEU LEU LEU ARG SEQRES 10 B 528 PRO GLU ARG PRO GLY ASP THR GLN TYR VAL ALA ALA ASN SEQRES 11 B 528 ASP PRO ALA VAL SER THR VAL GLY LEU VAL ALA GLN GLY SEQRES 12 B 528 LEU ALA GLY GLU PRO LEU LEU PHE VAL GLY ARG GLY TYR SEQRES 13 B 528 THR SER ARG GLY VAL GLY GLY GLY ILE PRO PRO ILE THR SEQRES 14 B 528 THR ARG ALA LEU TRP PRO PRO ASP PRO GLN ALA ALA PHE SEQRES 15 B 528 SER TYR GLU GLU THR ALA LYS LEU ALA VAL GLY ARG LEU SEQRES 16 B 528 SER GLU TYR SER HIS HIS PHE VAL SER ALA PHE ALA ARG SEQRES 17 B 528 GLY ALA SER ALA TYR PHE LEU PHE LEU ARG ARG ASP LEU SEQRES 18 B 528 GLN ALA GLN SER ARG ALA PHE ARG ALA TYR VAL SER ARG SEQRES 19 B 528 VAL CYS LEU ARG ASP GLN HIS TYR TYR SER TYR VAL GLU SEQRES 20 B 528 LEU PRO LEU ALA CYS GLU GLY GLY ARG TYR GLY LEU ILE SEQRES 21 B 528 GLN ALA ALA ALA VAL ALA THR SER ARG GLU VAL ALA HIS SEQRES 22 B 528 GLY GLU VAL LEU PHE ALA ALA PHE SER SER ALA ALA PRO SEQRES 23 B 528 PRO THR VAL GLY ARG PRO PRO SER ALA ALA ALA GLY ALA SEQRES 24 B 528 SER GLY ALA SER ALA LEU CYS ALA PHE PRO LEU ASP GLU SEQRES 25 B 528 VAL ASP ARG LEU ALA ASN ARG THR ARG ASP ALA CYS TYR SEQRES 26 B 528 THR ARG GLU GLY ARG ALA GLU ASP GLY THR GLU VAL ALA SEQRES 27 B 528 TYR ILE GLU TYR ASP VAL ASN SER ASP CYS ALA GLN LEU SEQRES 28 B 528 PRO VAL ASP THR LEU ASP ALA TYR PRO CYS GLY SER ASP SEQRES 29 B 528 HIS THR PRO SER PRO MET ALA SER ARG VAL PRO LEU GLU SEQRES 30 B 528 ALA THR PRO ILE LEU GLU TRP PRO GLY ILE GLN LEU THR SEQRES 31 B 528 ALA VAL ALA VAL THR MET GLU ASP GLY HIS THR ILE ALA SEQRES 32 B 528 PHE LEU GLY ASP SER GLN GLY GLN LEU HIS ARG VAL TYR SEQRES 33 B 528 LEU GLY PRO GLY SER ASP GLY HIS PRO TYR SER THR GLN SEQRES 34 B 528 SER ILE GLN GLN GLY SER ALA VAL SER ARG ASP LEU THR SEQRES 35 B 528 PHE ASP GLY THR PHE GLU HIS LEU TYR VAL MET THR GLN SEQRES 36 B 528 SER THR LEU LEU LYS VAL PRO VAL ALA SER CYS ALA GLN SEQRES 37 B 528 HIS LEU ASP CYS ALA SER CYS LEU ALA HIS ARG ASP PRO SEQRES 38 B 528 TYR CYS GLY TRP CYS VAL LEU LEU GLY ARG CYS SER ARG SEQRES 39 B 528 ARG SER GLU CYS SER ARG GLY GLN GLY PRO GLU GLN TRP SEQRES 40 B 528 LEU TRP SER PHE GLN PRO GLU LEU GLY CYS LEU GLN GLY SEQRES 41 B 528 THR LYS HIS HIS HIS HIS HIS HIS MODRES 3OL2 ASN B 334 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 49 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 329 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 419 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 77 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 139 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 191 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET NAG A3000 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE FORMUL 3 NAG 13(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) HELIX 1 1 GLU A 33 VAL A 37 5 5 HELIX 2 2 SER A 90 GLU A 99 1 10 HELIX 3 3 PRO A 284 GLY A 287 5 4 HELIX 4 4 LEU A 330 GLY A 340 1 11 HELIX 5 5 ASP A 372 ALA A 378 1 7 HELIX 6 6 SER A 382 LEU A 386 5 5 HELIX 7 7 PRO A 387 HIS A 397 1 11 HELIX 8 8 PRO A 406 ARG A 410 5 5 HELIX 9 9 PHE A 502 HIS A 506 5 5 HELIX 10 10 THR A 508 ALA A 515 1 8 HELIX 11 11 PRO A 538 LEU A 542 5 5 HELIX 12 12 ASP A 549 CYS A 553 5 5 HELIX 13 13 SER A 615 SER A 619 5 5 HELIX 14 14 VAL B 114 GLY B 117 5 4 HELIX 15 15 GLY B 138 TYR B 142 5 5 HELIX 16 16 ASP B 193 ALA B 197 5 5 HELIX 17 17 ARG B 210 SER B 215 1 6 HELIX 18 18 ALA B 313 GLY B 317 5 5 HELIX 19 19 LEU B 326 ARG B 343 1 18 HELIX 20 20 ASP B 370 TYR B 375 1 6 HELIX 21 21 SER B 481 HIS B 485 5 5 HELIX 22 22 ASP B 487 HIS B 494 1 8 HELIX 23 23 ARG B 510 CYS B 514 5 5 SHEET 1 A 5 THR A 31 TRP A 32 0 SHEET 2 A 5 ALA A 457 GLN A 465 1 O GLU A 463 N TRP A 32 SHEET 3 A 5 ALA A 447 LEU A 454 -1 N ILE A 452 O HIS A 459 SHEET 4 A 5 VAL A 435 THR A 443 -1 N VAL A 441 O HIS A 449 SHEET 5 A 5 TYR A 420 GLN A 429 -1 N ASP A 426 O VAL A 438 SHEET 1 B 4 VAL A 40 PHE A 42 0 SHEET 2 B 4 VAL A 495 ALA A 498 -1 O VAL A 495 N PHE A 42 SHEET 3 B 4 PHE A 486 GLY A 490 -1 N VAL A 487 O ALA A 498 SHEET 4 B 4 THR A 475 SER A 479 -1 N SER A 479 O PHE A 486 SHEET 1 C 4 ALA A 52 LEU A 55 0 SHEET 2 C 4 THR A 61 GLY A 65 -1 O TYR A 63 N LEU A 54 SHEET 3 C 4 ALA A 69 ASN A 74 -1 O VAL A 73 N LEU A 62 SHEET 4 C 4 LYS A 81 TYR A 86 -1 O VAL A 85 N VAL A 70 SHEET 1 D 4 ILE A 112 PRO A 117 0 SHEET 2 D 4 SER A 122 GLY A 127 -1 O TYR A 124 N GLN A 116 SHEET 3 D 4 ALA A 134 ASN A 139 -1 O ASP A 136 N VAL A 125 SHEET 4 D 4 LYS A 144 PHE A 145 -1 O LYS A 144 N ASN A 139 SHEET 1 E 4 ILE A 112 PRO A 117 0 SHEET 2 E 4 SER A 122 GLY A 127 -1 O TYR A 124 N GLN A 116 SHEET 3 E 4 ALA A 134 ASN A 139 -1 O ASP A 136 N VAL A 125 SHEET 4 E 4 GLU A 150 ASP A 151 -1 O GLU A 150 N CYS A 135 SHEET 1 F 4 THR A 165 VAL A 169 0 SHEET 2 F 4 GLU A 172 SER A 178 -1 O TYR A 174 N VAL A 167 SHEET 3 F 4 PRO A 186 ASN A 191 -1 O SER A 189 N SER A 175 SHEET 4 F 4 LEU A 197 ARG A 198 -1 O LEU A 197 N ARG A 190 SHEET 1 G 4 SER A 210 ILE A 217 0 SHEET 2 G 4 ARG A 230 VAL A 238 -1 O ARG A 230 N ILE A 217 SHEET 3 G 4 LEU A 249 CYS A 257 -1 O ARG A 252 N PHE A 235 SHEET 4 G 4 LEU A 275 ARG A 278 -1 O ALA A 277 N ILE A 253 SHEET 1 H 2 SER A 282 ARG A 283 0 SHEET 2 H 2 LEU A 288 VAL A 289 -1 O LEU A 288 N ARG A 283 SHEET 1 I 4 VAL A 292 LEU A 299 0 SHEET 2 I 4 VAL A 308 THR A 314 -1 O LEU A 312 N ARG A 294 SHEET 3 I 4 LEU A 322 ASN A 329 -1 O CYS A 326 N ALA A 311 SHEET 4 I 4 LEU A 413 LYS A 416 -1 O LYS A 415 N SER A 323 SHEET 1 J 2 MET A 343 VAL A 348 0 SHEET 2 J 2 HIS A 352 ARG A 357 -1 O VAL A 356 N GLN A 344 SHEET 1 K 2 CYS A 520 SER A 523 0 SHEET 2 K 2 THR A 528 ALA A 531 -1 O VAL A 530 N ALA A 521 SHEET 1 L 5 ARG A 562 PHE A 566 0 SHEET 2 L 5 THR A 634 VAL A 646 1 O VAL A 643 N HIS A 564 SHEET 3 L 5 GLY A 620 ARG A 629 -1 N GLY A 620 O LEU A 644 SHEET 4 L 5 ARG A 584 PHE A 589 -1 N PHE A 586 O LEU A 625 SHEET 5 L 5 GLY A 592 VAL A 593 -1 O GLY A 592 N PHE A 589 SHEET 1 M 3 ALA A 572 LEU A 574 0 SHEET 2 M 3 ASN A 608 ILE A 611 -1 O LEU A 609 N LEU A 574 SHEET 3 M 3 TYR A 601 MET A 604 -1 N MET A 604 O ASN A 608 SHEET 1 N 4 ALA B 27 PHE B 28 0 SHEET 2 N 4 LEU B 474 PRO B 478 -1 O LEU B 474 N PHE B 28 SHEET 3 N 4 HIS B 465 MET B 469 -1 N LEU B 466 O VAL B 477 SHEET 4 N 4 THR B 458 PHE B 459 -1 N THR B 458 O TYR B 467 SHEET 1 O 4 LEU B 35 ARG B 40 0 SHEET 2 O 4 LEU B 47 ALA B 51 -1 O GLY B 50 N GLN B 36 SHEET 3 O 4 PHE B 54 LEU B 58 -1 O PHE B 54 N ALA B 51 SHEET 4 O 4 LEU B 64 SER B 69 -1 O GLU B 65 N GLN B 57 SHEET 1 P 2 VAL B 73 ASP B 75 0 SHEET 2 P 2 GLN B 92 THR B 94 -1 O THR B 94 N VAL B 73 SHEET 1 Q 4 ASN B 98 VAL B 103 0 SHEET 2 Q 4 ALA B 107 GLY B 112 -1 O VAL B 109 N LEU B 102 SHEET 3 Q 4 CYS B 119 ARG B 123 -1 O ARG B 122 N LEU B 108 SHEET 4 Q 4 GLN B 126 LEU B 132 -1 O LEU B 131 N GLN B 121 SHEET 1 R 3 THR B 152 GLN B 158 0 SHEET 2 R 3 PRO B 164 ARG B 170 -1 O LEU B 165 N ALA B 157 SHEET 3 R 3 ILE B 184 ALA B 188 -1 O ARG B 187 N LEU B 166 SHEET 1 S 6 HIS B 217 ARG B 224 0 SHEET 2 S 6 SER B 227 ARG B 235 -1 O TYR B 229 N PHE B 222 SHEET 3 S 6 PHE B 244 CYS B 252 -1 O ARG B 245 N ARG B 234 SHEET 4 S 6 VAL B 262 ALA B 267 -1 O LEU B 264 N VAL B 248 SHEET 5 S 6 MET B 386 SER B 388 1 O SER B 388 N GLU B 263 SHEET 6 S 6 ALA B 354 ILE B 356 -1 N TYR B 355 O ALA B 387 SHEET 1 T 5 HIS B 217 ARG B 224 0 SHEET 2 T 5 SER B 227 ARG B 235 -1 O TYR B 229 N PHE B 222 SHEET 3 T 5 PHE B 244 CYS B 252 -1 O ARG B 245 N ARG B 234 SHEET 4 T 5 VAL B 262 ALA B 267 -1 O LEU B 264 N VAL B 248 SHEET 5 T 5 LEU B 392 GLU B 393 1 O LEU B 392 N PRO B 265 SHEET 1 U 8 LEU B 398 TRP B 400 0 SHEET 2 U 8 SER B 319 PRO B 325 -1 N SER B 319 O TRP B 400 SHEET 3 U 8 VAL B 292 SER B 298 -1 N ALA B 295 O CYS B 322 SHEET 4 U 8 LEU B 275 THR B 283 -1 N GLN B 277 O ALA B 296 SHEET 5 U 8 LEU B 405 GLU B 413 1 O VAL B 410 N THR B 283 SHEET 6 U 8 HIS B 416 ASP B 423 -1 O PHE B 420 N ALA B 409 SHEET 7 U 8 GLN B 427 TYR B 432 -1 O VAL B 431 N ALA B 419 SHEET 8 U 8 SER B 443 SER B 446 -1 O SER B 443 N ARG B 430 SHEET 1 V 3 ARG B 507 SER B 509 0 SHEET 2 V 3 GLY B 500 CYS B 502 -1 N GLY B 500 O SER B 509 SHEET 3 V 3 TRP B 523 TRP B 525 -1 O LEU B 524 N TRP B 501 SSBOND 1 CYS A 97 CYS A 108 1555 1555 2.03 SSBOND 2 CYS A 126 CYS A 135 1555 1555 2.04 SSBOND 3 CYS A 257 CYS A 370 1555 1555 2.04 SSBOND 4 CYS A 281 CYS A 326 1555 1555 2.06 SSBOND 5 CYS A 503 CYS A 520 1555 1555 2.04 SSBOND 6 CYS A 509 CYS A 553 1555 1555 2.04 SSBOND 7 CYS A 512 CYS A 529 1555 1555 2.04 SSBOND 8 CYS A 576 CYS A 624 1555 1555 2.03 SSBOND 9 CYS B 79 CYS B 88 1555 1555 2.03 SSBOND 10 CYS B 111 CYS B 119 1555 1555 2.04 SSBOND 11 CYS B 252 CYS B 377 1555 1555 2.05 SSBOND 12 CYS B 268 CYS B 322 1555 1555 2.06 SSBOND 13 CYS B 340 CYS B 364 1555 1555 2.07 SSBOND 14 CYS B 482 CYS B 499 1555 1555 2.05 SSBOND 15 CYS B 488 CYS B 533 1555 1555 2.04 SSBOND 16 CYS B 491 CYS B 508 1555 1555 2.06 SSBOND 17 CYS B 502 CYS B 514 1555 1555 2.03 LINK ND2 ASN A 49 C1 NAG C 1 1555 1555 1.41 LINK ND2 ASN A 77 C1 NAG A3000 1555 1555 1.47 LINK ND2 ASN A 139 C1 NAG D 1 1555 1555 1.47 LINK ND2 ASN A 191 C1 NAG G 1 1555 1555 1.48 LINK ND2 ASN A 329 C1 NAG E 1 1555 1555 1.41 LINK ND2 ASN A 419 C1 NAG F 1 1555 1555 1.46 LINK ND2 ASN B 334 C1 NAG H 1 1555 1555 1.37 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.49 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.52 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.48 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.48 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.46 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.48 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.42 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.44 CISPEP 1 VAL A 320 GLY A 321 0 0.67 CISPEP 2 GLU A 349 GLN A 350 0 -16.32 CISPEP 3 LYS A 364 PRO A 365 0 -0.51 CISPEP 4 SER A 598 PRO A 599 0 4.48 CISPEP 5 GLY B 71 PRO B 72 0 -2.22 CISPEP 6 PRO B 81 PRO B 82 0 -1.27 CISPEP 7 CYS B 268 GLU B 269 0 -9.94 CISPEP 8 GLU B 348 ASP B 349 0 0.93 CISPEP 9 GLY B 350 THR B 351 0 -4.27 CISPEP 10 SER B 384 PRO B 385 0 -1.46 CISPEP 11 LEU B 531 GLY B 532 0 5.09 CRYST1 83.055 173.436 482.119 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002074 0.00000 MASTER 528 0 16 23 86 0 0 6 0 0 0 92 END