HEADER TRANSFERASE 15-AUG-10 3OFJ TITLE CRYSTAL STRUCTURE OF N-METHYLTRANSFERASE NODS FROM BRADYRHIZOBIUM TITLE 2 JAPONICUM WM9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NODULATION PROTEIN S; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM SP.; SOURCE 3 ORGANISM_TAXID: 133505; SOURCE 4 STRAIN: WM9; SOURCE 5 GENE: NODS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS NODS, N-METHYLTRANSFERASE, SAH, SAM, NOD FACTOR, NODULATION, NITROGEN KEYWDS 2 FIXATION, SYMBIOSIS, ALPHA/BETA STRUCTURE, VARIANT OF ROSSMANN FOLD, KEYWDS 3 SAM-DEPENDENT N-METHYLTRANSFERASE, S-ADENOSYL-L-METHIONINE (SAM), KEYWDS 4 LIPOCHITOOLIGOSACCHARIDE, METHYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.CAKICI,M.SIKORSKI,T.STEPKOWSKI,G.BUJACZ,M.JASKOLSKI REVDAT 4 13-JUL-11 3OFJ 1 VERSN REVDAT 3 08-DEC-10 3OFJ 1 JRNL REVDAT 2 10-NOV-10 3OFJ 1 JRNL REVDAT 1 27-OCT-10 3OFJ 0 JRNL AUTH O.CAKICI,M.SIKORSKI,T.STEPKOWSKI,G.BUJACZ,M.JASKOLSKI JRNL TITL CRYSTAL STRUCTURES OF NODS N-METHYLTRANSFERASE FROM JRNL TITL 2 BRADYRHIZOBIUM JAPONICUM IN LIGAND-FREE FORM AND AS SAH JRNL TITL 3 COMPLEX. JRNL REF J.MOL.BIOL. V. 404 874 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20970431 JRNL DOI 10.1016/J.JMB.2010.10.016 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.CAKICI,M.SIKORSKI,T.STEPKOWSKI,G.BUJACZ,M.JASKOLSKI REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY ANALYSIS OF NODS N-METHYLTRANSFERASE FROM REMARK 1 TITL 3 BRADYRHIZOBIUM JAPONICUM WM9 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. F64 1149 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19052372 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 5300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : R-FREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 12.700 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1349 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1837 ; 1.843 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 6.905 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;34.212 ;24.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 212 ;18.855 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.501 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 220 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1010 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 883 ; 0.955 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1406 ; 1.934 ; 2.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 466 ; 5.171 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 431 ; 7.843 ;10.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6700 -6.4620 14.4400 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.1702 REMARK 3 T33: 0.1848 T12: -0.0695 REMARK 3 T13: -0.0170 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.9812 L22: 2.5085 REMARK 3 L33: 6.7102 L12: -1.6537 REMARK 3 L13: -0.3671 L23: 0.6468 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.2462 S13: -0.1445 REMARK 3 S21: 0.1253 S22: -0.1554 S23: 0.1820 REMARK 3 S31: 0.1543 S32: -0.4388 S33: 0.0676 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2460 4.3720 16.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.4888 T22: 0.3152 REMARK 3 T33: 0.3786 T12: 0.0895 REMARK 3 T13: -0.0226 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 9.4427 L22: 3.0226 REMARK 3 L33: 6.3916 L12: 0.1398 REMARK 3 L13: -0.7700 L23: 0.5865 REMARK 3 S TENSOR REMARK 3 S11: 0.1961 S12: -0.2794 S13: -0.1363 REMARK 3 S21: 0.1798 S22: -0.1608 S23: 0.4442 REMARK 3 S31: 0.0011 S32: -0.7893 S33: -0.0352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOMS WERE ADDED AT RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB061051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8086 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6954 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.740 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NODS FROM NODS-SAH COMPLEX (3OFK) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 3350, 0.1 M MAGNESIUM REMARK 280 CHLORIDE, PH 7.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.76500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.14750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.38250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.76500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.38250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 106.14750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 ILE A -5 REMARK 465 ASP A -4 REMARK 465 PRO A -3 REMARK 465 PHE A -2 REMARK 465 THR A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 THR A 6 REMARK 465 TYR A 7 REMARK 465 GLN A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 ARG A 12 REMARK 465 GLU A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ASN A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 PRO A 19 REMARK 465 TRP A 20 REMARK 465 ARG A 21 REMARK 465 ARG A 200 REMARK 465 SER A 201 REMARK 465 SER A 202 REMARK 465 ILE A 203 REMARK 465 ARG A 204 REMARK 465 PRO A 205 REMARK 465 ASP A 206 REMARK 465 GLY A 207 REMARK 465 ARG A 208 REMARK 465 ALA A 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 -124.34 46.70 REMARK 500 LYS A 87 -35.78 -39.70 REMARK 500 ARG A 149 173.90 -57.65 REMARK 500 CYS A 181 65.79 -113.16 REMARK 500 GLN A 182 85.97 -66.51 REMARK 500 GLN A 184 -80.65 -89.97 REMARK 500 SER A 185 -158.64 -70.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OFK RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT VAL1 IS THE FIRST RESIDUE OF THE PROTEIN REMARK 999 SEQUENCE AND CORRESPONDS TO STANDARD TRANSLATION OF THE GTG CODON REMARK 999 AS VALINE, EVEN THOUGH IN THE SEQUENCE DATABASE REFERENCE THIS REMARK 999 POSITION IS OCCUPIED BY METHIONINE. DBREF 3OFJ A 2 209 UNP Q9AQ22 Q9AQ22_BRASW 2 209 SEQADV 3OFJ GLY A -6 UNP Q9AQ22 EXPRESSION TAG SEQADV 3OFJ ILE A -5 UNP Q9AQ22 EXPRESSION TAG SEQADV 3OFJ ASP A -4 UNP Q9AQ22 EXPRESSION TAG SEQADV 3OFJ PRO A -3 UNP Q9AQ22 EXPRESSION TAG SEQADV 3OFJ PHE A -2 UNP Q9AQ22 EXPRESSION TAG SEQADV 3OFJ THR A -1 UNP Q9AQ22 EXPRESSION TAG SEQADV 3OFJ MET A 0 UNP Q9AQ22 EXPRESSION TAG SEQADV 3OFJ VAL A 1 UNP Q9AQ22 SEE REMARK 999 SEQRES 1 A 216 GLY ILE ASP PRO PHE THR MET VAL SER VAL ASP ASN THR SEQRES 2 A 216 TYR GLN SER LEU GLU ARG GLU LEU ALA ASN ASP ASP PRO SEQRES 3 A 216 TRP ARG LEU ASP ASP ASN PRO PHE GLU ARG GLU ARG HIS SEQRES 4 A 216 THR GLN LEU LEU ARG LEU SER LEU SER SER GLY ALA VAL SEQRES 5 A 216 SER ASN GLY LEU GLU ILE GLY CYS ALA ALA GLY ALA PHE SEQRES 6 A 216 THR GLU LYS LEU ALA PRO HIS CYS LYS ARG LEU THR VAL SEQRES 7 A 216 ILE ASP VAL MET PRO ARG ALA ILE GLY ARG ALA CYS GLN SEQRES 8 A 216 ARG THR LYS ARG TRP SER HIS ILE SER TRP ALA ALA THR SEQRES 9 A 216 ASP ILE LEU GLN PHE SER THR ALA GLU LEU PHE ASP LEU SEQRES 10 A 216 ILE VAL VAL ALA GLU VAL LEU TYR TYR LEU GLU ASP MET SEQRES 11 A 216 THR GLN MET ARG THR ALA ILE ASP ASN MET VAL LYS MET SEQRES 12 A 216 LEU ALA PRO GLY GLY HIS LEU VAL PHE GLY SER ALA ARG SEQRES 13 A 216 ASP ALA THR CYS ARG ARG TRP GLY HIS VAL ALA GLY ALA SEQRES 14 A 216 GLU THR VAL ILE THR ILE LEU THR GLU ALA LEU THR GLU SEQRES 15 A 216 VAL GLU ARG VAL GLN CYS GLN GLY GLN SER ALA ASP GLU SEQRES 16 A 216 ASP CYS LEU LEU ALA ARG PHE ARG ASN PRO GLU ARG SER SEQRES 17 A 216 SER ILE ARG PRO ASP GLY ARG ALA FORMUL 2 HOH *18(H2 O) HELIX 1 1 ASN A 25 SER A 41 1 17 HELIX 2 2 GLY A 56 ALA A 63 1 8 HELIX 3 3 MET A 75 THR A 86 1 12 HELIX 4 4 ASP A 122 MET A 136 1 15 HELIX 5 5 ARG A 149 ARG A 155 1 7 HELIX 6 6 GLY A 161 LEU A 173 1 13 SHEET 1 A 7 ILE A 92 ALA A 95 0 SHEET 2 A 7 CYS A 66 ILE A 72 1 N VAL A 71 O SER A 93 SHEET 3 A 7 VAL A 45 ILE A 51 1 N GLY A 48 O ARG A 68 SHEET 4 A 7 PHE A 108 VAL A 113 1 O LEU A 110 N LEU A 49 SHEET 5 A 7 LEU A 137 ALA A 148 1 O VAL A 144 N VAL A 113 SHEET 6 A 7 CYS A 190 ARG A 196 -1 O PHE A 195 N LEU A 143 SHEET 7 A 7 THR A 174 GLN A 180 -1 N VAL A 176 O ARG A 194 CRYST1 48.700 48.700 141.530 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020534 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007066 0.00000 MASTER 386 0 0 6 7 0 0 6 0 0 0 17 END