HEADER CONTRACTILE PROTEIN 09-JUL-10 3NWN TITLE CRYSTAL STRUCTURE OF THE HUMAN KIF9 MOTOR DOMAIN IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MOTOR DOMAIN (UNP RESIDUES 1-340); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF9; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PFBOH-LIC KEYWDS KINESIN, MOTOR DOMAIN, ADP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHU,W.TEMPEL,H.HE,Y.SHEN,J.WANG,G.BROTHERS,R.LANDRY,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 2 08-NOV-17 3NWN 1 REMARK REVDAT 1 21-JUL-10 3NWN 0 SPRSDE 21-JUL-10 3NWN 2NR8 JRNL AUTH H.ZHU,W.TEMPEL,H.HE,Y.SHEN,J.WANG,G.BROTHERS,R.LANDRY, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,M.SUNDSTROM,J.WEIGELT, JRNL AUTH 3 A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN KIF9 MOTOR DOMAIN IN COMPLEX JRNL TITL 2 WITH ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 22881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.004 REMARK 3 FREE R VALUE TEST SET COUNT : 1145 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34900 REMARK 3 B22 (A**2) : -0.34900 REMARK 3 B33 (A**2) : 0.52400 REMARK 3 B12 (A**2) : -0.17500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.890 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2501 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1647 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3393 ; 1.414 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4042 ; 1.400 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 6.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;41.365 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;13.771 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.125 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 393 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2742 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 459 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1584 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1145 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1319 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 106 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.058 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.099 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1720 ; 2.810 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 630 ; 0.590 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2490 ; 3.679 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1058 ; 2.659 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 899 ; 3.514 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ARP/WARP,MOLPROBITY,COOT WERE ALSO USED IN REFINEMENT. REMARK 4 REMARK 4 3NWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GOJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 0.1M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.19000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.19000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.19000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT OF THE PROTEIN IS NOT KNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 45.22150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 78.32594 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -45.22150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 78.32594 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 SER A 228 REMARK 465 ARG A 229 REMARK 465 THR A 230 REMARK 465 LEU A 231 REMARK 465 SER A 232 REMARK 465 GLU A 233 REMARK 465 GLU A 234 REMARK 465 ARG A 251 REMARK 465 LEU A 252 REMARK 465 GLY A 253 REMARK 465 LYS A 254 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 GLU A 258 REMARK 465 GLY A 259 REMARK 465 GLN A 260 REMARK 465 VAL A 261 REMARK 465 LEU A 262 REMARK 465 LYS A 263 REMARK 465 GLU A 264 REMARK 465 ALA A 265 REMARK 465 THR A 266 REMARK 465 GLN A 285 REMARK 465 LYS A 286 REMARK 465 ARG A 287 REMARK 465 ASP A 288 REMARK 465 HIS A 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 31 NE CZ NH1 NH2 REMARK 470 GLU A 108 OE1 OE2 REMARK 470 LYS A 111 CD CE NZ REMARK 470 ARG A 125 NE CZ NH1 NH2 REMARK 470 ARG A 215 NE CZ NH1 NH2 REMARK 470 LYS A 270 CE NZ REMARK 470 ARG A 293 NE CZ NH1 NH2 REMARK 470 GLU A 325 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 295 CB CYS A 295 SG -0.226 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 57.80 -110.94 REMARK 500 LEU A 305 -69.74 -107.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 343 O REMARK 620 2 HOH A 346 O 175.9 REMARK 620 3 THR A 100 OG1 100.6 82.9 REMARK 620 4 HOH A 344 O 77.6 99.9 96.4 REMARK 620 5 ADP A 401 O2B 88.9 93.2 90.4 165.8 REMARK 620 6 HOH A 342 O 83.4 93.2 176.0 84.7 89.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 DBREF 3NWN A 1 340 UNP Q9HAQ2 KIF9_HUMAN 1 340 SEQADV 3NWN MET A -18 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN GLY A -17 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN SER A -16 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN SER A -15 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN HIS A -14 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN HIS A -13 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN HIS A -12 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN HIS A -11 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN HIS A -10 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN HIS A -9 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN SER A -8 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN SER A -7 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN GLY A -6 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN LEU A -5 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN VAL A -4 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN PRO A -3 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN ARG A -2 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN GLY A -1 UNP Q9HAQ2 EXPRESSION TAG SEQADV 3NWN SER A 0 UNP Q9HAQ2 EXPRESSION TAG SEQRES 1 A 359 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 359 LEU VAL PRO ARG GLY SER MET GLY THR ARG LYS LYS VAL SEQRES 3 A 359 HIS ALA PHE VAL ARG VAL LYS PRO THR ASP ASP PHE ALA SEQRES 4 A 359 HIS GLU MET ILE ARG TYR GLY ASP ASP LYS ARG SER ILE SEQRES 5 A 359 ASP ILE HIS LEU LYS LYS ASP ILE ARG ARG GLY VAL VAL SEQRES 6 A 359 ASN ASN GLN GLN THR ASP TRP SER PHE LYS LEU ASP GLY SEQRES 7 A 359 VAL LEU HIS ASP ALA SER GLN ASP LEU VAL TYR GLU THR SEQRES 8 A 359 VAL ALA LYS ASP VAL VAL SER GLN ALA LEU ASP GLY TYR SEQRES 9 A 359 ASN GLY THR ILE MET CYS TYR GLY GLN THR GLY ALA GLY SEQRES 10 A 359 LYS THR TYR THR MET MET GLY ALA THR GLU ASN TYR LYS SEQRES 11 A 359 HIS ARG GLY ILE LEU PRO ARG ALA LEU GLN GLN VAL PHE SEQRES 12 A 359 ARG MET ILE GLU GLU ARG PRO THR HIS ALA ILE THR VAL SEQRES 13 A 359 ARG VAL SER TYR LEU GLU ILE TYR ASN GLU SER LEU PHE SEQRES 14 A 359 ASP LEU LEU SER THR LEU PRO TYR VAL GLY PRO SER VAL SEQRES 15 A 359 THR PRO MET THR ILE VAL GLU ASN PRO GLN GLY VAL PHE SEQRES 16 A 359 ILE LYS GLY LEU SER VAL HIS LEU THR SER GLN GLU GLU SEQRES 17 A 359 ASP ALA PHE SER LEU LEU PHE GLU GLY GLU THR ASN ARG SEQRES 18 A 359 ILE ILE ALA SER HIS THR MET ASN LYS ASN SER SER ARG SEQRES 19 A 359 SER HIS CYS ILE PHE THR ILE TYR LEU GLU ALA HIS SER SEQRES 20 A 359 ARG THR LEU SER GLU GLU LYS TYR ILE THR SER LYS ILE SEQRES 21 A 359 ASN LEU VAL ASP LEU ALA GLY SER GLU ARG LEU GLY LYS SEQRES 22 A 359 SER GLY SER GLU GLY GLN VAL LEU LYS GLU ALA THR TYR SEQRES 23 A 359 ILE ASN LYS SER LEU SER PHE LEU GLU GLN ALA ILE ILE SEQRES 24 A 359 ALA LEU GLY ASP GLN LYS ARG ASP HIS ILE PRO PHE ARG SEQRES 25 A 359 GLN CYS LYS LEU THR HIS ALA LEU LYS ASP SER LEU GLY SEQRES 26 A 359 GLY ASN CYS ASN MET VAL LEU VAL THR ASN ILE TYR GLY SEQRES 27 A 359 GLU ALA ALA GLN LEU GLU GLU THR LEU SER SER LEU ARG SEQRES 28 A 359 PHE ALA SER ARG MET LYS LEU VAL HET MG A 402 1 HET CL A 341 1 HET ADP A 401 27 HET UNX A1001 1 HET UNX A1002 1 HET UNX A1003 1 HET UNX A1004 1 HET UNX A1005 1 HET UNX A1006 1 HET UNX A1007 1 HET UNX A1008 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 MG MG 2+ FORMUL 3 CL CL 1- FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 UNX 8(X) FORMUL 13 HOH *85(H2 O) HELIX 1 1 ARG A 42 ASN A 47 1 6 HELIX 2 2 SER A 65 ALA A 74 1 10 HELIX 3 3 ALA A 74 ASP A 83 1 10 HELIX 4 4 GLY A 98 MET A 104 1 7 HELIX 5 5 ASN A 109 ARG A 113 5 5 HELIX 6 6 GLY A 114 GLU A 129 1 16 HELIX 7 7 GLN A 187 ASN A 210 1 24 HELIX 8 8 ASN A 212 SER A 216 5 5 HELIX 9 9 LYS A 270 ASP A 284 1 15 HELIX 10 10 PRO A 291 GLN A 294 5 4 HELIX 11 11 CYS A 295 LEU A 301 1 7 HELIX 12 12 LEU A 301 GLY A 306 1 6 HELIX 13 13 GLU A 320 ALA A 322 5 3 HELIX 14 14 GLN A 323 SER A 335 1 13 HELIX 15 15 ARG A 336 VAL A 340 5 5 SHEET 1 A 8 GLY A 59 HIS A 62 0 SHEET 2 A 8 VAL A 7 VAL A 13 1 N VAL A 11 O LEU A 61 SHEET 3 A 8 ASN A 310 ILE A 317 1 O LEU A 313 N PHE A 10 SHEET 4 A 8 GLY A 87 GLY A 93 1 N TYR A 92 O ASN A 316 SHEET 5 A 8 ILE A 237 ASP A 245 1 O VAL A 244 N ILE A 89 SHEET 6 A 8 HIS A 217 HIS A 227 -1 N LEU A 224 O SER A 239 SHEET 7 A 8 ALA A 134 TYR A 145 -1 N ILE A 144 O HIS A 217 SHEET 8 A 8 SER A 148 ASP A 151 -1 O PHE A 150 N GLU A 143 SHEET 1 B 8 GLY A 59 HIS A 62 0 SHEET 2 B 8 VAL A 7 VAL A 13 1 N VAL A 11 O LEU A 61 SHEET 3 B 8 ASN A 310 ILE A 317 1 O LEU A 313 N PHE A 10 SHEET 4 B 8 GLY A 87 GLY A 93 1 N TYR A 92 O ASN A 316 SHEET 5 B 8 ILE A 237 ASP A 245 1 O VAL A 244 N ILE A 89 SHEET 6 B 8 HIS A 217 HIS A 227 -1 N LEU A 224 O SER A 239 SHEET 7 B 8 ALA A 134 TYR A 145 -1 N ILE A 144 O HIS A 217 SHEET 8 B 8 HIS A 183 LEU A 184 -1 O HIS A 183 N VAL A 139 SHEET 1 C 3 ILE A 24 TYR A 26 0 SHEET 2 C 3 SER A 32 HIS A 36 -1 O ASP A 34 N ARG A 25 SHEET 3 C 3 ASP A 52 LYS A 56 -1 O TRP A 53 N ILE A 35 SHEET 1 D 2 THR A 167 ASN A 171 0 SHEET 2 D 2 GLY A 174 LYS A 178 -1 O PHE A 176 N VAL A 169 LINK MG MG A 402 O HOH A 343 1555 1555 1.91 LINK MG MG A 402 O HOH A 346 1555 1555 1.97 LINK OG1 THR A 100 MG MG A 402 1555 1555 2.01 LINK MG MG A 402 O HOH A 344 1555 1555 2.10 LINK MG MG A 402 O2B ADP A 401 1555 1555 2.12 LINK MG MG A 402 O HOH A 342 1555 1555 2.31 SITE 1 AC1 6 THR A 100 HOH A 342 HOH A 343 HOH A 344 SITE 2 AC1 6 HOH A 346 ADP A 401 SITE 1 AC2 4 SER A 65 GLN A 66 HIS A 112 HOH A 415 SITE 1 AC3 17 ARG A 12 LYS A 14 PRO A 15 GLN A 94 SITE 2 AC3 17 THR A 95 GLY A 96 ALA A 97 GLY A 98 SITE 3 AC3 17 LYS A 99 THR A 100 TYR A 101 HOH A 342 SITE 4 AC3 17 HOH A 343 HOH A 346 HOH A 347 HOH A 355 SITE 5 AC3 17 MG A 402 CRYST1 90.443 90.443 76.380 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011060 0.006380 0.000000 0.00000 SCALE2 0.000000 0.012770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013090 0.00000 MASTER 392 0 11 15 21 0 8 6 0 0 0 28 END