HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-10 3NQN TITLE CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION. (DR_2006) FROM TITLE 2 DEINOCOCCUS RADIODURANS AT 1.88 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DR_2006; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PROTEIN WITH UNKNOWN FUNCTION, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 17-JUL-19 3NQN 1 REMARK LINK REVDAT 2 25-OCT-17 3NQN 1 REMARK REVDAT 1 18-AUG-10 3NQN 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION. JRNL TITL 2 (DR_2006) FROM DEINOCOCCUS RADIODURANS AT 1.88 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 26914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2217 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.371 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2501 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1729 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3441 ; 1.070 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4213 ; 0.716 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 3.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;28.805 ;22.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;12.486 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.896 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2900 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 534 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 1.662 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 648 ; 0.461 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2540 ; 2.717 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 909 ; 4.563 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 872 ; 6.700 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 156 6 REMARK 3 1 B 3 B 156 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1688 ; 0.470 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1688 ; 2.380 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5451 14.6682 43.6087 REMARK 3 T TENSOR REMARK 3 T11: 0.0352 T22: 0.1223 REMARK 3 T33: 0.0890 T12: -0.0046 REMARK 3 T13: 0.0142 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.5828 L22: 0.8948 REMARK 3 L33: 1.6033 L12: 0.1006 REMARK 3 L13: -0.0587 L23: 0.3040 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.0552 S13: -0.0168 REMARK 3 S21: 0.0907 S22: -0.0340 S23: 0.0079 REMARK 3 S31: -0.0091 S32: 0.0183 S33: 0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5122 14.8182 80.0261 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.0230 REMARK 3 T33: 0.0708 T12: 0.0117 REMARK 3 T13: 0.0056 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.9876 L22: 0.9528 REMARK 3 L33: 1.9166 L12: -0.1451 REMARK 3 L13: -0.1807 L23: -0.3757 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.0576 S13: -0.0513 REMARK 3 S21: 0.0667 S22: 0.0238 S23: -0.0503 REMARK 3 S31: -0.0503 S32: -0.0025 S33: -0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. WATERS WERE EXCLUDED FROM THE ASSIGNMENT OF TLS REMARK 3 GROUPS. 5. CALCIUM (CA) FROM THE CRYSTALLIZATION AND (4R)-2- REMARK 3 METHYL-2,4-PENTANEDIOL (MRD), USED AS A CRYO- PROTECTANT WERE REMARK 3 MODELED INTO THE STRUCTURE. 6. ELECTRON DENSITIES CORRESPONDING REMARK 3 TO RESIDUES 116-119 ON THE A SUBUNIT AND RESIDUES 117-123 ON THE REMARK 3 B SUBUNIT WERE DISORDERED AND THESE REGIONS COULD NOT BE REMARK 3 RELIABLY MODELED. REMARK 4 REMARK 4 3NQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97925,0.97883 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 28.893 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE R MERGE, AND COMPLETENETSS STATISTICS REMARK 200 REPORTED IN REMARK 200 WERE COMPUTED WITH XSCALE WITH FRIEDEL REMARK 200 PAIRS KEPT SEPARATE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.0500M CALCIUM CHLORIDE, 15.8000% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.87650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.75450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.75450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 167.81475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.75450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.75450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.93825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.75450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.75450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 167.81475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.75450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.75450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.93825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 111.87650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND ANAYLTICAL SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ILE A 2 REMARK 465 THR A 116 REMARK 465 PRO A 117 REMARK 465 GLU A 118 REMARK 465 ALA A 119 REMARK 465 PRO B 117 REMARK 465 GLU B 118 REMARK 465 ALA B 119 REMARK 465 GLU B 120 REMARK 465 GLY B 121 REMARK 465 TRP B 122 REMARK 465 GLY B 123 REMARK 465 ALA B 157 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 129 CE NZ REMARK 470 GLU B 100 CD OE1 OE2 REMARK 470 THR B 116 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 57 -47.94 75.00 REMARK 500 LEU B 57 -50.03 71.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 159 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MSE B 1 O REMARK 620 2 HOH B 202 O 78.5 REMARK 620 3 GLU B 140 OE2 172.1 99.3 REMARK 620 4 HOH B 184 O 85.0 148.4 100.2 REMARK 620 5 SER B 4 O 80.6 69.0 105.8 81.8 REMARK 620 6 HOH B 353 O 92.9 65.2 79.4 143.2 134.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 158 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 302 O REMARK 620 2 ASP B 62 OD1 128.9 REMARK 620 3 HOH A 194 O 82.6 84.4 REMARK 620 4 HOH B 190 O 95.2 75.2 151.8 REMARK 620 5 ASP A 62 OD1 78.6 143.3 127.6 78.8 REMARK 620 6 HOH A 214 O 149.1 81.1 95.0 100.6 78.7 REMARK 620 7 ASP A 62 OD2 79.0 144.2 77.1 130.2 51.5 70.5 REMARK 620 8 ASP B 62 OD2 77.2 51.9 80.5 71.7 139.6 133.0 149.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 160 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 333 O REMARK 620 2 HOH B 337 O 75.8 REMARK 620 3 GLU B 6 O 101.6 162.1 REMARK 620 4 HOH B 234 O 65.9 94.0 69.1 REMARK 620 5 HOH B 176 O 138.3 91.5 78.7 75.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394616 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NQN A 1 157 UNP Q9RSW5 Q9RSW5_DEIRA 1 157 DBREF 3NQN B 1 157 UNP Q9RSW5 Q9RSW5_DEIRA 1 157 SEQADV 3NQN GLY A 0 UNP Q9RSW5 LEADER SEQUENCE SEQADV 3NQN GLY B 0 UNP Q9RSW5 LEADER SEQUENCE SEQRES 1 A 158 GLY MSE ILE LEU SER ALA GLU GLN SER PHE THR LEU ARG SEQRES 2 A 158 HIS PRO HIS GLY GLN ALA ALA ALA LEU ALA PHE VAL ARG SEQRES 3 A 158 GLU PRO ALA ALA ALA LEU ALA GLY VAL ARG PHE LEU ARG SEQRES 4 A 158 GLY LEU ASP SER ASP GLY GLU GLN VAL TRP GLY GLU LEU SEQRES 5 A 158 LEU VAL THR VAL PRO LEU LEU GLY GLU VAL ASP LEU PRO SEQRES 6 A 158 PHE ARG SER GLU ILE VAL ARG THR PRO GLN GLY ALA GLU SEQRES 7 A 158 LEU ARG PRO LEU THR LEU THR GLY GLU ARG ALA TRP VAL SEQRES 8 A 158 ALA VAL SER GLY GLN ALA THR ALA ALA GLU GLY GLY GLU SEQRES 9 A 158 MSE ALA PHE ALA PHE GLN PHE GLN ALA HIS LEU ALA THR SEQRES 10 A 158 PRO GLU ALA GLU GLY TRP GLY GLY ALA ALA PHE GLU LYS SEQRES 11 A 158 MSE VAL GLN ALA ALA ALA GLY ARG THR LEU GLU ARG VAL SEQRES 12 A 158 ALA LYS ALA LEU PRO GLU GLY LEU ALA ALA GLY LEU PRO SEQRES 13 A 158 PRO ALA SEQRES 1 B 158 GLY MSE ILE LEU SER ALA GLU GLN SER PHE THR LEU ARG SEQRES 2 B 158 HIS PRO HIS GLY GLN ALA ALA ALA LEU ALA PHE VAL ARG SEQRES 3 B 158 GLU PRO ALA ALA ALA LEU ALA GLY VAL ARG PHE LEU ARG SEQRES 4 B 158 GLY LEU ASP SER ASP GLY GLU GLN VAL TRP GLY GLU LEU SEQRES 5 B 158 LEU VAL THR VAL PRO LEU LEU GLY GLU VAL ASP LEU PRO SEQRES 6 B 158 PHE ARG SER GLU ILE VAL ARG THR PRO GLN GLY ALA GLU SEQRES 7 B 158 LEU ARG PRO LEU THR LEU THR GLY GLU ARG ALA TRP VAL SEQRES 8 B 158 ALA VAL SER GLY GLN ALA THR ALA ALA GLU GLY GLY GLU SEQRES 9 B 158 MSE ALA PHE ALA PHE GLN PHE GLN ALA HIS LEU ALA THR SEQRES 10 B 158 PRO GLU ALA GLU GLY TRP GLY GLY ALA ALA PHE GLU LYS SEQRES 11 B 158 MSE VAL GLN ALA ALA ALA GLY ARG THR LEU GLU ARG VAL SEQRES 12 B 158 ALA LYS ALA LEU PRO GLU GLY LEU ALA ALA GLY LEU PRO SEQRES 13 B 158 PRO ALA MODRES 3NQN MSE A 104 MET SELENOMETHIONINE MODRES 3NQN MSE A 130 MET SELENOMETHIONINE MODRES 3NQN MSE B 1 MET SELENOMETHIONINE MODRES 3NQN MSE B 104 MET SELENOMETHIONINE MODRES 3NQN MSE B 130 MET SELENOMETHIONINE HET MSE A 104 8 HET MSE A 130 13 HET MSE B 1 8 HET MSE B 104 8 HET MSE B 130 13 HET CA A 158 1 HET MRD A 161 8 HET MRD A 163 8 HET CA B 159 1 HET CA B 160 1 HET MRD B 162 8 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 CA 3(CA 2+) FORMUL 4 MRD 3(C6 H14 O2) FORMUL 9 HOH *190(H2 O) HELIX 1 1 GLY A 16 GLU A 26 1 11 HELIX 2 2 GLU A 26 LEU A 31 1 6 HELIX 3 3 GLU A 120 GLY A 153 1 34 HELIX 4 4 GLY B 16 ARG B 25 1 10 HELIX 5 5 GLU B 26 GLY B 33 1 8 HELIX 6 6 GLY B 124 ALA B 152 1 29 SHEET 1 A 7 SER A 4 ARG A 12 0 SHEET 2 A 7 GLU A 103 HIS A 113 -1 O PHE A 108 N GLN A 7 SHEET 3 A 7 TRP A 89 ALA A 98 -1 N TRP A 89 O HIS A 113 SHEET 4 A 7 GLY A 75 PRO A 80 -1 N LEU A 78 O GLY A 94 SHEET 5 A 7 GLY A 59 THR A 72 -1 N GLU A 68 O ARG A 79 SHEET 6 A 7 GLN A 46 VAL A 55 -1 N VAL A 47 O SER A 67 SHEET 7 A 7 ARG A 38 SER A 42 -1 N ASP A 41 O TRP A 48 SHEET 1 B 7 SER B 4 ARG B 12 0 SHEET 2 B 7 GLU B 103 HIS B 113 -1 O MSE B 104 N LEU B 11 SHEET 3 B 7 TRP B 89 ALA B 98 -1 N TRP B 89 O HIS B 113 SHEET 4 B 7 GLY B 75 PRO B 80 -1 N LEU B 78 O GLY B 94 SHEET 5 B 7 GLY B 59 THR B 72 -1 N GLU B 68 O ARG B 79 SHEET 6 B 7 GLN B 46 VAL B 55 -1 N VAL B 53 O VAL B 61 SHEET 7 B 7 ARG B 38 SER B 42 -1 N ARG B 38 O GLU B 50 LINK C GLU A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N ALA A 105 1555 1555 1.33 LINK C LYS A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N VAL A 131 1555 1555 1.34 LINK C GLY B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ILE B 2 1555 1555 1.34 LINK C GLU B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N ALA B 105 1555 1555 1.33 LINK C LYS B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N VAL B 131 1555 1555 1.33 LINK O MSE B 1 CA CA B 159 1555 1555 2.27 LINK CA CA B 159 O HOH B 202 1555 1555 2.28 LINK CA CA A 158 O HOH A 302 1555 1555 2.31 LINK OD1 ASP B 62 CA CA A 158 1555 1555 2.37 LINK OE2 GLU B 140 CA CA B 159 1555 1555 2.38 LINK CA CA B 160 O HOH B 333 1555 1555 2.42 LINK CA CA A 158 O HOH A 194 1555 1555 2.43 LINK CA CA B 159 O HOH B 184 1555 1555 2.44 LINK CA CA B 160 O HOH B 337 1555 1555 2.47 LINK CA CA A 158 O HOH B 190 1555 1555 2.47 LINK O SER B 4 CA CA B 159 1555 1555 2.49 LINK OD1 ASP A 62 CA CA A 158 1555 1555 2.49 LINK O GLU B 6 CA CA B 160 1555 1555 2.51 LINK CA CA B 160 O HOH B 234 1555 1555 2.53 LINK CA CA B 159 O HOH B 353 1555 1555 2.55 LINK CA CA A 158 O HOH A 214 1555 1555 2.55 LINK OD2 ASP A 62 CA CA A 158 1555 1555 2.58 LINK OD2 ASP B 62 CA CA A 158 1555 1555 2.64 LINK CA CA B 160 O HOH B 176 1555 1555 2.67 SITE 1 AC1 6 ASP A 62 HOH A 194 HOH A 214 HOH A 302 SITE 2 AC1 6 ASP B 62 HOH B 190 SITE 1 AC2 3 VAL A 24 ALA A 30 GLY A 94 SITE 1 AC3 4 GLN A 95 ALA A 105 HOH A 180 HOH A 261 SITE 1 AC4 7 HOH A 264 MSE B 1 SER B 4 GLU B 140 SITE 2 AC4 7 HOH B 184 HOH B 202 HOH B 353 SITE 1 AC5 5 GLU B 6 HOH B 176 HOH B 234 HOH B 333 SITE 2 AC5 5 HOH B 337 SITE 1 AC6 7 VAL B 24 PRO B 27 LEU B 31 ALA B 76 SITE 2 AC6 7 LEU B 78 GLY B 94 GLN B 95 CRYST1 53.509 53.509 223.753 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004469 0.00000 MASTER 443 0 11 6 14 0 10 6 0 0 0 26 END