HEADER HYDROLASE 29-JUN-10 3NQH TITLE CRYSTAL STRUCTURE OF A GLYCOSYL HYDROLASE (BT_2959) FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 AT 2.11 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOSYL HYDROLASE FAMILY 43 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_2959; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 17-JUL-19 3NQH 1 REMARK LINK REVDAT 2 25-OCT-17 3NQH 1 REMARK REVDAT 1 28-JUL-10 3NQH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A GLYCOSYL HYDROLASE (BT_2959) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.11 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.65000 REMARK 3 B22 (A**2) : 1.65000 REMARK 3 B33 (A**2) : -3.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.054 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3632 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2476 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4940 ; 1.523 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6027 ; 0.848 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 3.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;29.437 ;23.774 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;10.865 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4086 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 768 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2220 ; 1.299 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 907 ; 0.289 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3595 ; 2.293 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1412 ; 3.921 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ; 5.238 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0910 19.5570 49.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.1008 REMARK 3 T33: 0.0171 T12: 0.0283 REMARK 3 T13: -0.0073 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.2221 L22: 0.9290 REMARK 3 L33: 4.2648 L12: -0.1311 REMARK 3 L13: 0.2449 L23: -0.5585 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: -0.0460 S13: -0.0178 REMARK 3 S21: 0.0876 S22: 0.1094 S23: -0.0512 REMARK 3 S31: -0.2620 S32: 0.0018 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8910 18.9120 27.3540 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.1832 REMARK 3 T33: 0.0464 T12: -0.0816 REMARK 3 T13: 0.0298 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.7800 L22: 1.0327 REMARK 3 L33: 5.0177 L12: -0.1371 REMARK 3 L13: -0.1938 L23: 0.6518 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: 0.2575 S13: -0.0312 REMARK 3 S21: -0.1301 S22: 0.1111 S23: -0.1971 REMARK 3 S31: -0.1194 S32: 0.3007 S33: 0.0305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. GLYCEROL (GOL) AND ACETATE (ACT) FROM THE REMARK 3 CRYOPROTECTION AND CRYSTALLIZATION CONDITIONS HAVE BEEN MODELED REMARK 3 IN THE STRUCTURE. 6. THE SIDECHAIN OF ASN A128 IS NEAR THE REMARK 3 INTERFACE BETWEEN SYMMETRY-RELATED MOLECULES AND COULD NOT BE REMARK 3 RELIABLY MODELED. REMARK 4 REMARK 4 3NQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97852,0.97802 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 29.801 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : 0.11900 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.92300 REMARK 200 R SYM FOR SHELL (I) : 0.92300 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0000% GLYCEROL, 0.1700M NH4OAC, REMARK 280 25.5000% PEG-4000, 0.1M CITRATE PH 5.6, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.46150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.46150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.15250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.46150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.46150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.71750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.46150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.46150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.15250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.46150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.46150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.71750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.43500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 ARG A 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CD CE NZ REMARK 470 ASN A 128 CG OD1 ND2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 147 CE NZ REMARK 470 LYS A 188 CD CE NZ REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 LYS A 322 CE NZ REMARK 470 ARG A 328 CZ NH1 NH2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 470 LYS A 442 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 81 -46.16 -131.98 REMARK 500 GLU A 86 -65.85 -92.15 REMARK 500 ARG A 87 172.06 179.83 REMARK 500 TRP A 162 -108.47 -101.95 REMARK 500 GLU A 207 -164.39 -128.34 REMARK 500 SER A 208 63.81 33.62 REMARK 500 SER A 227 -140.67 53.57 REMARK 500 LYS A 342 85.11 57.00 REMARK 500 LYS A 342 85.04 56.86 REMARK 500 THR A 367 31.20 -98.37 REMARK 500 ALA A 411 -174.87 -173.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396210 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22-460 OF REMARK 999 THE TARGET SEQUENCE. DBREF 3NQH A 21 460 UNP Q8A3J5 Q8A3J5_BACTN 21 460 SEQADV 3NQH GLY A 20 UNP Q8A3J5 LEADER SEQUENCE SEQRES 1 A 441 GLY ARG LYS THR GLU LYS VAL VAL ASN ASN GLY ILE PRO SEQRES 2 A 441 TRP PHE ASP ASP ARG GLY GLU ILE VAL ASN ALA HIS GLY SEQRES 3 A 441 ALA CYS ILE VAL GLU GLU ASN GLY ARG TYR TYR LEU PHE SEQRES 4 A 441 GLY GLU TYR LYS SER ASP LYS SER ASN ALA PHE PRO GLY SEQRES 5 A 441 PHE SER CYS TYR SER SER ASP ASP LEU VAL ASN TRP LYS SEQRES 6 A 441 PHE GLU ARG VAL VAL LEU PRO MSE GLN SER SER GLY ILE SEQRES 7 A 441 LEU GLY PRO ASP ARG VAL GLY GLU ARG VAL LYS VAL MSE SEQRES 8 A 441 LYS CYS PRO SER THR GLY GLU TYR VAL MSE TYR MSE HIS SEQRES 9 A 441 ALA ASP ASP MSE ASN TYR LYS ASP PRO HIS ILE GLY TYR SEQRES 10 A 441 ALA THR CYS SER THR ILE ALA GLY GLU TYR LYS LEU HIS SEQRES 11 A 441 GLY PRO LEU LEU TYR GLU GLY LYS PRO ILE ARG ARG TRP SEQRES 12 A 441 ASP MSE GLY THR TYR GLN ASP THR ASP GLY THR GLY TYR SEQRES 13 A 441 LEU LEU LEU HIS GLY GLY ILE VAL TYR ARG LEU SER LYS SEQRES 14 A 441 ASP TYR ARG THR ALA GLU GLU LYS VAL VAL SER GLY VAL SEQRES 15 A 441 GLY GLY SER HIS GLY GLU SER PRO ALA MSE PHE LYS LYS SEQRES 16 A 441 ASP GLY THR TYR PHE PHE LEU PHE SER ASN LEU THR SER SEQRES 17 A 441 TRP GLU LYS ASN ASP ASN PHE TYR PHE THR ALA PRO SER SEQRES 18 A 441 VAL LYS GLY PRO TRP THR ARG GLN GLY LEU PHE ALA PRO SEQRES 19 A 441 GLU GLY SER LEU THR TYR ASN SER GLN THR THR PHE VAL SEQRES 20 A 441 PHE PRO LEU LYS CYS GLY GLU ASP THR ILE PRO MSE PHE SEQRES 21 A 441 MSE GLY ASP ARG TRP SER TYR PRO HIS GLN ALA SER ALA SEQRES 22 A 441 ALA THR TYR VAL TRP MSE PRO MSE GLN VAL ASP GLY THR SEQRES 23 A 441 LYS LEU SER ILE PRO GLU TYR TRP PRO SER TRP ASP VAL SEQRES 24 A 441 ASP LYS LEU LYS PRO VAL ASN PRO LEU ARG LYS GLY LYS SEQRES 25 A 441 THR VAL ASP LEU LYS LYS ILE THR PHE SER LYS GLU ALA SEQRES 26 A 441 ASP TRP LYS VAL GLU GLU GLY ARG ILE SER SER ASN VAL SEQRES 27 A 441 LYS GLY SER THR LEU SER ILE PRO PHE THR GLY SER CYS SEQRES 28 A 441 VAL ALA VAL MSE GLY GLU THR ASN CYS HIS SER GLY TYR SEQRES 29 A 441 ALA ARG MSE ASN ILE LEU ASP LYS LYS GLY GLU LYS ILE SEQRES 30 A 441 TYR SER SER LEU VAL ASP PHE TYR SER LYS ALA ASN ASP SEQRES 31 A 441 HIS ALA THR ARG PHE LYS THR PRO GLN LEU ALA GLU GLY SEQRES 32 A 441 GLU TYR THR LEU VAL ILE GLU VAL THR GLY ILE SER PRO SEQRES 33 A 441 THR TRP THR ASP LYS THR LYS ARG ILE TYR GLY SER ASP SEQRES 34 A 441 ASP CYS PHE VAL THR ILE THR ASP ILE VAL LYS LEU MODRES 3NQH MSE A 92 MET SELENOMETHIONINE MODRES 3NQH MSE A 110 MET SELENOMETHIONINE MODRES 3NQH MSE A 120 MET SELENOMETHIONINE MODRES 3NQH MSE A 122 MET SELENOMETHIONINE MODRES 3NQH MSE A 127 MET SELENOMETHIONINE MODRES 3NQH MSE A 164 MET SELENOMETHIONINE MODRES 3NQH MSE A 211 MET SELENOMETHIONINE MODRES 3NQH MSE A 278 MET SELENOMETHIONINE MODRES 3NQH MSE A 280 MET SELENOMETHIONINE MODRES 3NQH MSE A 298 MET SELENOMETHIONINE MODRES 3NQH MSE A 300 MET SELENOMETHIONINE MODRES 3NQH MSE A 374 MET SELENOMETHIONINE MODRES 3NQH MSE A 386 MET SELENOMETHIONINE HET MSE A 92 8 HET MSE A 110 8 HET MSE A 120 8 HET MSE A 122 8 HET MSE A 127 8 HET MSE A 164 8 HET MSE A 211 8 HET MSE A 278 8 HET MSE A 280 8 HET MSE A 298 8 HET MSE A 300 8 HET MSE A 374 8 HET MSE A 386 8 HET GOL A 501 6 HET GOL A 502 6 HET ACT A 503 4 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *239(H2 O) HELIX 1 1 SER A 256 SER A 261 1 6 HELIX 2 2 HIS A 288 ALA A 293 1 6 HELIX 3 3 ASN A 325 GLY A 330 5 6 HELIX 4 4 ASP A 334 ILE A 338 5 5 HELIX 5 5 LYS A 342 TRP A 346 5 5 SHEET 1 A 3 VAL A 26 ASN A 28 0 SHEET 2 A 3 SER A 315 ASP A 317 -1 O TRP A 316 N VAL A 27 SHEET 3 A 3 LYS A 322 PRO A 323 -1 O LYS A 322 N ASP A 317 SHEET 1 B 4 HIS A 44 GLU A 51 0 SHEET 2 B 4 ARG A 54 GLU A 60 -1 O GLU A 60 N HIS A 44 SHEET 3 B 4 PHE A 72 SER A 77 -1 O SER A 77 N TYR A 55 SHEET 4 B 4 LYS A 84 LEU A 90 -1 O LYS A 84 N SER A 76 SHEET 1 C 4 ARG A 102 LYS A 111 0 SHEET 2 C 4 TYR A 118 ASP A 126 -1 O HIS A 123 N GLU A 105 SHEET 3 C 4 HIS A 133 CYS A 139 -1 O HIS A 133 N ALA A 124 SHEET 4 C 4 LYS A 147 PRO A 151 -1 O HIS A 149 N TYR A 136 SHEET 1 D 2 LEU A 153 TYR A 154 0 SHEET 2 D 2 LYS A 157 PRO A 158 -1 O LYS A 157 N TYR A 154 SHEET 1 E 4 MSE A 164 GLN A 168 0 SHEET 2 E 4 GLY A 174 LEU A 178 -1 O LEU A 177 N GLY A 165 SHEET 3 E 4 ILE A 182 LEU A 186 -1 O LEU A 186 N GLY A 174 SHEET 4 E 4 ALA A 193 VAL A 198 -1 O GLU A 195 N ARG A 185 SHEET 1 F 4 GLU A 207 LYS A 214 0 SHEET 2 F 4 THR A 217 SER A 223 -1 O PHE A 219 N PHE A 212 SHEET 3 F 4 PHE A 234 ALA A 238 -1 O ALA A 238 N TYR A 218 SHEET 4 F 4 THR A 246 LEU A 250 -1 O THR A 246 N THR A 237 SHEET 1 G 3 GLN A 262 CYS A 271 0 SHEET 2 G 3 ASP A 274 ARG A 283 -1 O ILE A 276 N LEU A 269 SHEET 3 G 3 THR A 294 PRO A 299 -1 O MSE A 298 N PHE A 279 SHEET 1 H 2 GLN A 301 ASP A 303 0 SHEET 2 H 2 LYS A 306 SER A 308 -1 O SER A 308 N GLN A 301 SHEET 1 I 4 LYS A 331 THR A 332 0 SHEET 2 I 4 VAL A 452 LYS A 459 -1 O LYS A 459 N LYS A 331 SHEET 3 I 4 ARG A 352 SER A 355 -1 N ILE A 353 O ILE A 454 SHEET 4 I 4 LYS A 347 GLU A 349 -1 N LYS A 347 O SER A 354 SHEET 1 J 4 LYS A 331 THR A 332 0 SHEET 2 J 4 VAL A 452 LYS A 459 -1 O LYS A 459 N LYS A 331 SHEET 3 J 4 VAL A 371 THR A 377 -1 N MSE A 374 O ASP A 456 SHEET 4 J 4 ASP A 409 LYS A 415 -1 O ARG A 413 N VAL A 373 SHEET 1 K 5 THR A 339 PHE A 340 0 SHEET 2 K 5 THR A 361 PHE A 366 -1 O SER A 363 N THR A 339 SHEET 3 K 5 TYR A 424 VAL A 430 -1 O LEU A 426 N ILE A 364 SHEET 4 K 5 TYR A 383 LEU A 389 -1 N ASN A 387 O VAL A 427 SHEET 5 K 5 LYS A 395 ASP A 402 -1 O VAL A 401 N ALA A 384 SHEET 1 L 2 THR A 436 THR A 438 0 SHEET 2 L 2 ILE A 444 GLY A 446 -1 O TYR A 445 N TRP A 437 LINK C PRO A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N GLN A 93 1555 1555 1.33 LINK C VAL A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N LYS A 111 1555 1555 1.33 LINK C VAL A 119 N MSE A 120 1555 1555 1.32 LINK C MSE A 120 N TYR A 121 1555 1555 1.33 LINK C TYR A 121 N MSE A 122 1555 1555 1.34 LINK C MSE A 122 N HIS A 123 1555 1555 1.33 LINK C ASP A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N ASN A 128 1555 1555 1.32 LINK C ASP A 163 N MSE A 164 1555 1555 1.32 LINK C MSE A 164 N GLY A 165 1555 1555 1.33 LINK C ALA A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N PHE A 212 1555 1555 1.33 LINK C PRO A 277 N MSE A 278 1555 1555 1.34 LINK C MSE A 278 N PHE A 279 1555 1555 1.32 LINK C PHE A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N GLY A 281 1555 1555 1.33 LINK C TRP A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N PRO A 299 1555 1555 1.34 LINK C PRO A 299 N MSE A 300 1555 1555 1.33 LINK C MSE A 300 N GLN A 301 1555 1555 1.33 LINK C VAL A 373 N MSE A 374 1555 1555 1.33 LINK C MSE A 374 N GLY A 375 1555 1555 1.33 LINK C ARG A 385 N MSE A 386 1555 1555 1.33 LINK C MSE A 386 N ASN A 387 1555 1555 1.34 CISPEP 1 GLY A 243 PRO A 244 0 -3.93 CISPEP 2 TYR A 286 PRO A 287 0 2.18 SITE 1 AC1 10 GLU A 105 ARG A 106 TYR A 129 ASP A 163 SITE 2 AC1 10 GLU A 207 GLN A 262 HOH A 512 HOH A 588 SITE 3 AC1 10 HOH A 670 HOH A 701 SITE 1 AC2 3 GLN A 93 SER A 94 LYS A 358 SITE 1 AC3 2 ASP A 439 LYS A 440 CRYST1 78.923 78.923 166.870 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005993 0.00000 MASTER 395 0 16 5 41 0 5 6 0 0 0 34 END