HEADER HORMONE BINDING PROTEIN 22-JUN-10 3NMP TITLE CRYSTAL STRUCTURE OF THE ABSCISIC RECEPTOR PYL2 MUTANT A93F IN COMPLEX TITLE 2 WITH PYRABACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYL2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PYR1-LIKE PROTEIN 2, REGULATORY COMPONENTS OF ABA RECEPTOR COMPND 5 14; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PYL2, RCAR14, AT2G26040, T19L18.15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS PYL2, PYRABACTIN, PLANT HORMONE RECEPTOR, HELIX-GRIP FOLD, HORMONE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.E.ZHOU,K.MELCHER,L.-M.NG,F.-F.SOON,Y.XU,K.M.SUINO-POWELL,A.KOVACH, AUTHOR 2 J.LI,E.-L.YONG,H.E.XU REVDAT 3 08-NOV-17 3NMP 1 REMARK REVDAT 2 15-SEP-10 3NMP 1 JRNL REVDAT 1 25-AUG-10 3NMP 0 JRNL AUTH K.MELCHER,Y.XU,L.M.NG,X.E.ZHOU,F.F.SOON,V.CHINNUSAMY, JRNL AUTH 2 K.M.SUINO-POWELL,A.KOVACH,F.S.THAM,S.R.CUTLER,J.LI,E.L.YONG, JRNL AUTH 3 J.K.ZHU,H.E.XU JRNL TITL IDENTIFICATION AND MECHANISM OF ABA RECEPTOR ANTAGONISM. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1102 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20729862 JRNL DOI 10.1038/NSMB.1887 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.504 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4362 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2949 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5928 ; 1.555 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7179 ; 0.907 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 525 ; 4.382 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;41.029 ;23.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 741 ;14.063 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.542 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4791 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 894 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2637 ; 2.212 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1053 ; 1.187 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4335 ; 3.791 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1725 ; 3.631 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1593 ; 5.139 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7311 ; 3.553 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 223 ;15.256 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7218 ; 8.575 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32811 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM ACETATE, 22% PEG 3350, PH REMARK 280 8.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.45050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.45050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.04200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.78550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.04200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.78550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.45050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.04200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.78550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.45050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.04200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.78550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -124.16800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -91.45050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 ASP A 189 REMARK 465 GLY B 12 REMARK 465 ASP B 189 REMARK 465 GLY C 12 REMARK 465 ASP C 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 130 CB VAL A 130 CG2 -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 58 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 89 -157.73 -150.70 REMARK 500 ARG A 108 64.83 63.35 REMARK 500 HIS A 119 -165.94 -62.47 REMARK 500 SER A 183 -3.67 -156.94 REMARK 500 PHE B 66 -12.57 71.53 REMARK 500 SER B 183 -7.35 -140.34 REMARK 500 HIS B 187 -150.02 -85.55 REMARK 500 ASN C 59 54.23 -142.12 REMARK 500 TYR C 63 11.93 -140.38 REMARK 500 PRO C 92 -82.13 -33.32 REMARK 500 ARG C 120 -51.34 -28.13 REMARK 500 SER C 183 -1.15 -149.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV C 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MNH RELATED DB: PDB REMARK 900 WILD TYPE PYL2 IN COMPLEX WITH PYRABACTIN REMARK 900 RELATED ID: 3NMN RELATED DB: PDB REMARK 900 RELATED ID: 3NMT RELATED DB: PDB REMARK 900 RELATED ID: 3NMV RELATED DB: PDB REMARK 900 RELATED ID: 3KAZ RELATED DB: PDB REMARK 900 APO PYL2 REMARK 900 RELATED ID: 3KB0 RELATED DB: PDB REMARK 900 PYL2 IN COMPLEX WITH ABSCISIC ACID DBREF 3NMP A 14 189 UNP O80992 PYL2_ARATH 14 189 DBREF 3NMP B 14 189 UNP O80992 PYL2_ARATH 14 189 DBREF 3NMP C 14 189 UNP O80992 PYL2_ARATH 14 189 SEQADV 3NMP GLY A 12 UNP O80992 EXPRESSION TAG SEQADV 3NMP SER A 13 UNP O80992 EXPRESSION TAG SEQADV 3NMP PHE A 93 UNP O80992 ALA 93 ENGINEERED MUTATION SEQADV 3NMP GLY B 12 UNP O80992 EXPRESSION TAG SEQADV 3NMP SER B 13 UNP O80992 EXPRESSION TAG SEQADV 3NMP PHE B 93 UNP O80992 ALA 93 ENGINEERED MUTATION SEQADV 3NMP GLY C 12 UNP O80992 EXPRESSION TAG SEQADV 3NMP SER C 13 UNP O80992 EXPRESSION TAG SEQADV 3NMP PHE C 93 UNP O80992 ALA 93 ENGINEERED MUTATION SEQRES 1 A 178 GLY SER GLU GLN LYS THR LEU GLU PRO VAL ILE LYS THR SEQRES 2 A 178 TYR HIS GLN PHE GLU PRO ASP PRO THR THR CYS THR SER SEQRES 3 A 178 LEU ILE THR GLN ARG ILE HIS ALA PRO ALA SER VAL VAL SEQRES 4 A 178 TRP PRO LEU ILE ARG ARG PHE ASP ASN PRO GLU ARG TYR SEQRES 5 A 178 LYS HIS PHE VAL LYS ARG CYS ARG LEU ILE SER GLY ASP SEQRES 6 A 178 GLY ASP VAL GLY SER VAL ARG GLU VAL THR VAL ILE SER SEQRES 7 A 178 GLY LEU PRO PHE SER THR SER THR GLU ARG LEU GLU PHE SEQRES 8 A 178 VAL ASP ASP ASP HIS ARG VAL LEU SER PHE ARG VAL VAL SEQRES 9 A 178 GLY GLY GLU HIS ARG LEU LYS ASN TYR LYS SER VAL THR SEQRES 10 A 178 SER VAL ASN GLU PHE LEU ASN GLN ASP SER GLY LYS VAL SEQRES 11 A 178 TYR THR VAL VAL LEU GLU SER TYR THR VAL ASP ILE PRO SEQRES 12 A 178 GLU GLY ASN THR GLU GLU ASP THR LYS MET PHE VAL ASP SEQRES 13 A 178 THR VAL VAL LYS LEU ASN LEU GLN LYS LEU GLY VAL ALA SEQRES 14 A 178 ALA THR SER ALA PRO MET HIS ASP ASP SEQRES 1 B 178 GLY SER GLU GLN LYS THR LEU GLU PRO VAL ILE LYS THR SEQRES 2 B 178 TYR HIS GLN PHE GLU PRO ASP PRO THR THR CYS THR SER SEQRES 3 B 178 LEU ILE THR GLN ARG ILE HIS ALA PRO ALA SER VAL VAL SEQRES 4 B 178 TRP PRO LEU ILE ARG ARG PHE ASP ASN PRO GLU ARG TYR SEQRES 5 B 178 LYS HIS PHE VAL LYS ARG CYS ARG LEU ILE SER GLY ASP SEQRES 6 B 178 GLY ASP VAL GLY SER VAL ARG GLU VAL THR VAL ILE SER SEQRES 7 B 178 GLY LEU PRO PHE SER THR SER THR GLU ARG LEU GLU PHE SEQRES 8 B 178 VAL ASP ASP ASP HIS ARG VAL LEU SER PHE ARG VAL VAL SEQRES 9 B 178 GLY GLY GLU HIS ARG LEU LYS ASN TYR LYS SER VAL THR SEQRES 10 B 178 SER VAL ASN GLU PHE LEU ASN GLN ASP SER GLY LYS VAL SEQRES 11 B 178 TYR THR VAL VAL LEU GLU SER TYR THR VAL ASP ILE PRO SEQRES 12 B 178 GLU GLY ASN THR GLU GLU ASP THR LYS MET PHE VAL ASP SEQRES 13 B 178 THR VAL VAL LYS LEU ASN LEU GLN LYS LEU GLY VAL ALA SEQRES 14 B 178 ALA THR SER ALA PRO MET HIS ASP ASP SEQRES 1 C 178 GLY SER GLU GLN LYS THR LEU GLU PRO VAL ILE LYS THR SEQRES 2 C 178 TYR HIS GLN PHE GLU PRO ASP PRO THR THR CYS THR SER SEQRES 3 C 178 LEU ILE THR GLN ARG ILE HIS ALA PRO ALA SER VAL VAL SEQRES 4 C 178 TRP PRO LEU ILE ARG ARG PHE ASP ASN PRO GLU ARG TYR SEQRES 5 C 178 LYS HIS PHE VAL LYS ARG CYS ARG LEU ILE SER GLY ASP SEQRES 6 C 178 GLY ASP VAL GLY SER VAL ARG GLU VAL THR VAL ILE SER SEQRES 7 C 178 GLY LEU PRO PHE SER THR SER THR GLU ARG LEU GLU PHE SEQRES 8 C 178 VAL ASP ASP ASP HIS ARG VAL LEU SER PHE ARG VAL VAL SEQRES 9 C 178 GLY GLY GLU HIS ARG LEU LYS ASN TYR LYS SER VAL THR SEQRES 10 C 178 SER VAL ASN GLU PHE LEU ASN GLN ASP SER GLY LYS VAL SEQRES 11 C 178 TYR THR VAL VAL LEU GLU SER TYR THR VAL ASP ILE PRO SEQRES 12 C 178 GLU GLY ASN THR GLU GLU ASP THR LYS MET PHE VAL ASP SEQRES 13 C 178 THR VAL VAL LYS LEU ASN LEU GLN LYS LEU GLY VAL ALA SEQRES 14 C 178 ALA THR SER ALA PRO MET HIS ASP ASP HET PYV A 900 22 HET PYV B 900 22 HET PYV C 900 22 HETNAM PYV 4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE HETSYN PYV PYRABACTIN FORMUL 4 PYV 3(C16 H13 BR N2 O2 S) FORMUL 7 HOH *223(H2 O) HELIX 1 1 SER A 13 HIS A 26 1 14 HELIX 2 2 PRO A 46 ARG A 56 1 11 HELIX 3 3 ASN A 59 TYR A 63 5 5 HELIX 4 4 THR A 158 ALA A 184 1 27 HELIX 5 5 SER B 13 HIS B 26 1 14 HELIX 6 6 PRO B 46 ARG B 56 1 11 HELIX 7 7 ASN B 59 TYR B 63 5 5 HELIX 8 8 THR B 158 ALA B 184 1 27 HELIX 9 9 SER C 13 HIS C 26 1 14 HELIX 10 10 PRO C 46 ARG C 56 1 11 HELIX 11 11 ASN C 59 TYR C 63 5 5 HELIX 12 12 THR C 158 ALA C 184 1 27 SHEET 1 A 7 THR A 34 ILE A 43 0 SHEET 2 A 7 VAL A 141 ASP A 152 -1 O GLU A 147 N ILE A 39 SHEET 3 A 7 LYS A 125 LEU A 134 -1 N PHE A 133 O TYR A 142 SHEET 4 A 7 VAL A 109 VAL A 114 -1 N LEU A 110 O THR A 128 SHEET 5 A 7 SER A 94 ASP A 104 -1 N GLU A 101 O SER A 111 SHEET 6 A 7 VAL A 82 VAL A 87 -1 N ARG A 83 O GLU A 98 SHEET 7 A 7 VAL A 67 SER A 74 -1 N ARG A 69 O THR A 86 SHEET 1 B 7 THR B 34 ILE B 43 0 SHEET 2 B 7 VAL B 141 ASP B 152 -1 O VAL B 145 N GLN B 41 SHEET 3 B 7 LYS B 125 LEU B 134 -1 N ASN B 131 O VAL B 144 SHEET 4 B 7 VAL B 109 VAL B 114 -1 N LEU B 110 O THR B 128 SHEET 5 B 7 SER B 94 ASP B 104 -1 N ASP B 104 O VAL B 109 SHEET 6 B 7 VAL B 82 VAL B 87 -1 N VAL B 85 O SER B 96 SHEET 7 B 7 VAL B 67 SER B 74 -1 N ILE B 73 O VAL B 82 SHEET 1 C 7 THR C 34 ILE C 43 0 SHEET 2 C 7 VAL C 141 ASP C 152 -1 O GLU C 147 N ILE C 39 SHEET 3 C 7 LYS C 122 LEU C 134 -1 N LYS C 122 O ASP C 152 SHEET 4 C 7 VAL C 109 GLY C 116 -1 N LEU C 110 O THR C 128 SHEET 5 C 7 SER C 94 ASP C 104 -1 N THR C 97 O VAL C 115 SHEET 6 C 7 VAL C 82 VAL C 87 -1 N VAL C 85 O SER C 96 SHEET 7 C 7 VAL C 67 SER C 74 -1 N ARG C 71 O GLU C 84 SITE 1 AC1 9 LYS A 64 VAL A 87 GLU A 98 PHE A 112 SITE 2 AC1 9 VAL A 114 LEU A 121 TYR A 124 VAL A 169 SITE 3 AC1 9 HOH A 215 SITE 1 AC2 8 LYS B 64 HIS B 65 GLU B 98 PHE B 112 SITE 2 AC2 8 TYR B 124 VAL B 169 ASN B 173 HOH B 280 SITE 1 AC3 9 LYS C 64 VAL C 85 GLU C 98 VAL C 114 SITE 2 AC3 9 LEU C 121 TYR C 124 VAL C 169 ASN C 173 SITE 3 AC3 9 HOH C 245 CRYST1 62.084 105.571 182.901 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016107 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005467 0.00000 MASTER 373 0 3 12 21 0 8 6 0 0 0 42 END