HEADER ELECTRON TRANSPORT 22-JUN-10 3NMJ TITLE CRYSTAL STRUCTURE OF A NICKEL MEDIATED DIMER FOR THE PHENANTHROLINE- TITLE 2 MODIFIED CYTOCHROME CB562 VARIANT, MBP-PHEN2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CYTOCHROME B-562; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 4-HELIX-BUNDLE, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.J.RADFORD,F.A.TEZCAN REVDAT 2 29-DEC-10 3NMJ 1 JRNL REVDAT 1 24-NOV-10 3NMJ 0 JRNL AUTH R.J.RADFORD,M.LAWRENZ,P.C.NGUYEN,J.A.MCCAMMON,F.A.TEZCAN JRNL TITL POROUS PROTEIN FRAMEWORKS WITH UNSATURATED METAL CENTERS IN JRNL TITL 2 STERICALLY ENCUMBERED COORDINATION SITES. JRNL REF CHEM.COMMUN.(CAMB.) V. 47 313 2011 JRNL REFN ISSN 1359-7345 JRNL PMID 20740227 JRNL DOI 10.1039/C0CC02168G REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 246 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.298 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.666 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3531 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4777 ; 0.742 ; 2.163 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 419 ; 7.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;47.959 ;27.838 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;24.770 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;28.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2660 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2119 ; 0.980 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3361 ; 2.034 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 3.517 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1416 ; 5.801 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 106 1 REMARK 3 1 B 1 B 106 1 REMARK 3 1 C 1 C 106 1 REMARK 3 1 D 1 D 106 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 793 ; 0.100 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 B (A): 793 ; 0.100 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 C (A): 793 ; 0.100 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 D (A): 793 ; 0.100 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 793 ; 0.250 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 793 ; 0.240 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 793 ; 0.250 ; 0.500 REMARK 3 TIGHT THERMAL 1 D (A**2): 793 ; 0.250 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3NMJ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB060014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL; ASYMMETRIC CUT REMARK 200 4.9650 DEG. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11200 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 85.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17800 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43300 REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1 M TRIS, 0.2 AMMONIUM REMARK 280 SULFATE, 6.2 MM NICKEL SULFATE, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.87800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.43900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.65850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.21950 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.09750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 98 CAB HEM D 150 1.80 REMARK 500 SG CYS A 98 CAB HEM A 150 1.80 REMARK 500 SG CYS A 59 CAA PXX A 151 1.81 REMARK 500 SG CYS D 59 CAA PXX D 151 1.81 REMARK 500 SG CYS B 59 CAA PXX B 151 1.81 REMARK 500 SG CYS C 59 CAA PXX C 151 1.81 REMARK 500 SG CYS B 98 CAB HEM B 150 1.81 REMARK 500 SG CYS C 98 CAB HEM C 150 1.81 REMARK 500 SG CYS B 101 CAC HEM B 150 1.86 REMARK 500 SG CYS C 101 CAC HEM C 150 1.86 REMARK 500 SG CYS A 101 CAC HEM A 150 1.86 REMARK 500 SG CYS D 101 CAC HEM D 150 1.86 REMARK 500 OD2 ASP B 39 O HOH B 107 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HEM A 150 NA 89.3 REMARK 620 3 HEM A 150 NB 97.0 89.5 REMARK 620 4 HEM A 150 NC 88.9 178.1 90.0 REMARK 620 5 HEM A 150 ND 81.8 90.0 178.7 90.4 REMARK 620 6 MET A 7 SD 174.6 90.7 88.4 91.1 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 102 NE2 REMARK 620 2 HEM D 150 NA 84.2 REMARK 620 3 HEM D 150 NB 95.0 88.4 REMARK 620 4 HEM D 150 NC 93.7 177.8 91.1 REMARK 620 5 HEM D 150 ND 84.2 89.8 178.1 90.7 REMARK 620 6 MET D 7 SD 171.6 88.8 89.2 93.4 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 102 NE2 REMARK 620 2 HEM B 150 NA 89.2 REMARK 620 3 HEM B 150 NB 96.3 89.9 REMARK 620 4 HEM B 150 NC 93.2 177.6 89.3 REMARK 620 5 HEM B 150 ND 84.6 91.3 178.5 89.5 REMARK 620 6 MET B 7 SD 173.5 86.5 88.5 91.2 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 102 NE2 REMARK 620 2 HEM C 150 NA 86.8 REMARK 620 3 HEM C 150 NB 95.6 89.5 REMARK 620 4 HEM C 150 NC 95.2 177.9 89.7 REMARK 620 5 HEM C 150 ND 85.4 91.1 178.9 89.7 REMARK 620 6 MET C 7 SD 173.0 86.5 86.4 91.5 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 152 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PXX A 151 NAJ REMARK 620 2 PXX A 151 NAK 81.5 REMARK 620 3 PXX C 151 NAK 93.1 83.7 REMARK 620 4 PXX C 151 NAJ 92.8 162.3 79.9 REMARK 620 5 HOH A 107 O 123.3 92.2 142.4 104.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 152 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PXX D 151 NAK REMARK 620 2 PXX D 151 NAJ 81.5 REMARK 620 3 PXX B 151 NAK 84.2 96.6 REMARK 620 4 PXX B 151 NAJ 163.0 94.7 79.7 REMARK 620 5 HOH D 107 O 93.6 123.0 139.6 102.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXX A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXX B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXX C 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXX D 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FOO RELATED DB: PDB REMARK 900 RELATED ID: 3FOP RELATED DB: PDB REMARK 900 RELATED ID: 2BC5 RELATED DB: PDB REMARK 900 RELATED ID: 3NMI RELATED DB: PDB REMARK 900 RELATED ID: 3NMK RELATED DB: PDB DBREF 3NMJ A 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 3NMJ B 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 3NMJ C 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 3NMJ D 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 3NMJ CYS A 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 3NMJ ALA A 62 UNP P0ABE7 ARG 84 ENGINEERED MUTATION SEQADV 3NMJ ALA A 63 UNP P0ABE7 HIS 85 ENGINEERED MUTATION SEQADV 3NMJ ALA A 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 3NMJ CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 3NMJ CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 3NMJ CYS B 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 3NMJ ALA B 62 UNP P0ABE7 ARG 84 ENGINEERED MUTATION SEQADV 3NMJ ALA B 63 UNP P0ABE7 HIS 85 ENGINEERED MUTATION SEQADV 3NMJ ALA B 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 3NMJ CYS B 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 3NMJ CYS B 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 3NMJ CYS C 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 3NMJ ALA C 62 UNP P0ABE7 ARG 84 ENGINEERED MUTATION SEQADV 3NMJ ALA C 63 UNP P0ABE7 HIS 85 ENGINEERED MUTATION SEQADV 3NMJ ALA C 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 3NMJ CYS C 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 3NMJ CYS C 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 3NMJ CYS D 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 3NMJ ALA D 62 UNP P0ABE7 ARG 84 ENGINEERED MUTATION SEQADV 3NMJ ALA D 63 UNP P0ABE7 HIS 85 ENGINEERED MUTATION SEQADV 3NMJ ALA D 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 3NMJ CYS D 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 3NMJ CYS D 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 A 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLU MET CYS ASP PHE ALA ALA GLY PHE SEQRES 6 A 106 ALA ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 A 106 TYR ARG SEQRES 1 B 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 B 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 B 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 B 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 106 PRO ASP SER PRO GLU MET CYS ASP PHE ALA ALA GLY PHE SEQRES 6 B 106 ALA ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 7 B 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 B 106 TYR ARG SEQRES 1 C 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 C 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 C 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 C 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 C 106 PRO ASP SER PRO GLU MET CYS ASP PHE ALA ALA GLY PHE SEQRES 6 C 106 ALA ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 7 C 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 C 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 C 106 TYR ARG SEQRES 1 D 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 D 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 D 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 D 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 D 106 PRO ASP SER PRO GLU MET CYS ASP PHE ALA ALA GLY PHE SEQRES 6 D 106 ALA ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 7 D 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 D 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 D 106 TYR ARG HET HEM A 150 43 HET PXX A 151 18 HET HEM B 150 43 HET PXX B 151 18 HET NI B 152 1 HET NI C 152 1 HET HEM C 150 43 HET PXX C 151 18 HET HEM D 150 43 HET PXX D 151 18 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PXX N-1,10-PHENANTHROLIN-5-YLACETAMIDE HETNAM NI NICKEL (II) ION HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 PXX 4(C14 H11 N3 O) FORMUL 9 NI 2(NI 2+) FORMUL 15 HOH *4(H2 O) HELIX 1 1 ASP A 2 LYS A 19 1 18 HELIX 2 2 ASN A 22 GLN A 41 1 20 HELIX 3 3 PRO A 45 GLU A 49 5 5 HELIX 4 4 SER A 55 GLU A 81 1 27 HELIX 5 5 LYS A 83 ARG A 106 1 24 HELIX 6 6 ASP B 2 ALA B 20 1 19 HELIX 7 7 ASN B 22 GLN B 41 1 20 HELIX 8 8 PRO B 45 GLU B 49 5 5 HELIX 9 9 SER B 55 GLU B 81 1 27 HELIX 10 10 LYS B 83 ARG B 106 1 24 HELIX 11 11 ASP C 2 ALA C 20 1 19 HELIX 12 12 ASN C 22 GLN C 41 1 20 HELIX 13 13 PRO C 45 GLU C 49 5 5 HELIX 14 14 SER C 55 GLU C 81 1 27 HELIX 15 15 LYS C 83 ARG C 106 1 24 HELIX 16 16 ASP D 2 LYS D 19 1 18 HELIX 17 17 ASN D 22 GLN D 41 1 20 HELIX 18 18 PRO D 45 GLU D 49 5 5 HELIX 19 19 SER D 55 GLU D 81 1 27 HELIX 20 20 LYS D 83 ARG D 106 1 24 LINK NE2 HIS A 102 FE HEM A 150 1555 1555 1.85 LINK NE2 HIS D 102 FE HEM D 150 1555 1555 1.86 LINK NE2 HIS B 102 FE HEM B 150 1555 1555 1.87 LINK NE2 HIS C 102 FE HEM C 150 1555 1555 1.87 LINK NAJ PXX A 151 NI NI C 152 1555 1555 2.08 LINK NI NI B 152 NAK PXX D 151 1555 1555 2.09 LINK NAK PXX A 151 NI NI C 152 1555 1555 2.09 LINK NI NI C 152 NAK PXX C 151 1555 1555 2.09 LINK NI NI B 152 NAJ PXX D 151 1555 1555 2.09 LINK NAK PXX B 151 NI NI B 152 1555 1555 2.10 LINK NI NI C 152 NAJ PXX C 151 1555 1555 2.11 LINK NAJ PXX B 151 NI NI B 152 1555 1555 2.11 LINK SD MET D 7 FE HEM D 150 1555 1555 2.29 LINK SD MET B 7 FE HEM B 150 1555 1555 2.29 LINK SD MET C 7 FE HEM C 150 1555 1555 2.29 LINK SD MET A 7 FE HEM A 150 1555 1555 2.30 LINK NI NI C 152 O HOH A 107 1555 1555 2.56 LINK NI NI B 152 O HOH D 107 1555 1555 2.58 SITE 1 AC1 11 GLU A 4 MET A 7 ASN A 11 PRO A 46 SITE 2 AC1 11 PHE A 61 PHE A 65 CYS A 98 CYS A 101 SITE 3 AC1 11 HIS A 102 TYR A 105 ARG A 106 SITE 1 AC2 8 ASP A 54 CYS A 59 LYS B 42 THR C 44 SITE 2 AC2 8 PRO C 53 MET C 58 PXX C 151 NI C 152 SITE 1 AC3 3 HOH A 107 PXX A 151 PXX C 151 SITE 1 AC4 9 GLU B 4 MET B 7 PRO B 46 PHE B 61 SITE 2 AC4 9 PHE B 65 CYS B 98 CYS B 101 HIS B 102 SITE 3 AC4 9 ARG B 106 SITE 1 AC5 10 GLN A 41 GLN B 41 LYS B 42 ALA B 43 SITE 2 AC5 10 PRO B 53 MET B 58 CYS B 59 ALA B 62 SITE 3 AC5 10 NI B 152 PXX D 151 SITE 1 AC6 3 PXX B 151 HOH D 107 PXX D 151 SITE 1 AC7 8 LEU C 3 MET C 7 PRO C 45 PHE C 61 SITE 2 AC7 8 PHE C 65 CYS C 98 CYS C 101 HIS C 102 SITE 1 AC8 10 PXX A 151 GLN C 41 LYS C 42 ALA C 43 SITE 2 AC8 10 PRO C 53 MET C 58 CYS C 59 ALA C 62 SITE 3 AC8 10 NI C 152 GLN D 41 SITE 1 AC9 11 GLU D 4 MET D 7 PRO D 46 PHE D 61 SITE 2 AC9 11 PHE D 65 THR D 97 CYS D 98 CYS D 101 SITE 3 AC9 11 HIS D 102 TYR D 105 ARG D 106 SITE 1 BC1 9 THR B 44 PRO B 53 MET B 58 PXX B 151 SITE 2 BC1 9 NI B 152 LYS C 42 PRO D 53 ASP D 54 SITE 3 BC1 9 CYS D 59 CRYST1 99.291 99.291 109.317 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010071 0.005815 0.000000 0.00000 SCALE2 0.000000 0.011629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009148 0.00000 MASTER 432 0 10 20 0 0 24 6 0 0 0 36 END