HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-JUN-10 3NJA TITLE THE CRYSTAL STRUCTURE OF THE PAS DOMAIN OF A GGDEF FAMILY PROTEIN FROM TITLE 2 CHROMOBACTERIUM VIOLACEUM ATCC 12472. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GGDEF FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 243365; SOURCE 4 STRAIN: ATCC 12472; SOURCE 5 GENE: CV_1582; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,R.WU,B.FELDMANN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 1 18-AUG-10 3NJA 0 JRNL AUTH K.TAN,R.WU,B.FELDMANN,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE PAS DOMAIN OF A GGDEF FAMILY JRNL TITL 2 PROTEIN FROM CHROMOBACTERIUM VIOLACEUM ATCC 12472. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 18876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0873 - 4.5277 0.97 2913 143 0.1707 0.2156 REMARK 3 2 4.5277 - 3.5948 0.99 2800 148 0.1759 0.2721 REMARK 3 3 3.5948 - 3.1407 0.98 2720 162 0.2217 0.3028 REMARK 3 4 3.1407 - 2.8537 0.94 2594 149 0.2471 0.4443 REMARK 3 5 2.8537 - 2.6492 0.89 2463 126 0.2574 0.3486 REMARK 3 6 2.6492 - 2.4930 0.83 2287 134 0.2730 0.4322 REMARK 3 7 2.4930 - 2.3682 0.77 2121 116 0.3075 0.3671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 41.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.13230 REMARK 3 B22 (A**2) : 11.92820 REMARK 3 B33 (A**2) : -20.06040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3676 REMARK 3 ANGLE : 1.066 4978 REMARK 3 CHIRALITY : 0.070 510 REMARK 3 PLANARITY : 0.004 669 REMARK 3 DIHEDRAL : 20.229 1362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A OR CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 7.4493 60.8196 21.8337 REMARK 3 T TENSOR REMARK 3 T11: 0.3702 T22: 0.2669 REMARK 3 T33: 0.2055 T12: -0.0157 REMARK 3 T13: -0.0100 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.5892 L22: 0.3640 REMARK 3 L33: 2.9806 L12: 0.0194 REMARK 3 L13: 0.4125 L23: 1.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.2349 S12: 0.1409 S13: -0.0306 REMARK 3 S21: -0.0173 S22: -0.2462 S23: 0.0150 REMARK 3 S31: 0.0791 S32: -0.1546 S33: 0.0038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN C OR CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 28.1281 41.1038 38.3716 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.3492 REMARK 3 T33: 0.2121 T12: -0.1094 REMARK 3 T13: -0.0418 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.4420 L22: 0.5973 REMARK 3 L33: 2.7060 L12: 0.0586 REMARK 3 L13: 0.1001 L23: -0.2277 REMARK 3 S TENSOR REMARK 3 S11: -0.4011 S12: 0.2626 S13: 0.0275 REMARK 3 S21: -0.1571 S22: 0.2496 S23: -0.0124 REMARK 3 S31: -0.0021 S32: -0.2514 S33: 0.0962 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NJA COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.368 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 25% W/V PEG3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.28500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.76350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.28500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.76350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAINS A AND B, C AND D MAY REMARK 300 FORM DIMERS RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 131.05400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.57000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 65.52700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL C 124 LIES ON A SPECIAL POSITION. REMARK 375 CL CL D 125 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 HIS A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 HIS A 120 REMARK 465 LYS A 121 REMARK 465 GLN A 122 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 HIS B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 HIS B 120 REMARK 465 LYS B 121 REMARK 465 GLN B 122 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 LYS C 4 REMARK 465 LEU C 5 REMARK 465 LEU C 6 REMARK 465 HIS C 7 REMARK 465 THR C 8 REMARK 465 ALA C 9 REMARK 465 GLU C 10 REMARK 465 SER C 11 REMARK 465 ASP C 12 REMARK 465 LYS C 121 REMARK 465 GLN C 122 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 ALA D 2 REMARK 465 GLU D 3 REMARK 465 LYS D 4 REMARK 465 LEU D 5 REMARK 465 LEU D 6 REMARK 465 HIS D 7 REMARK 465 THR D 8 REMARK 465 ALA D 9 REMARK 465 GLU D 10 REMARK 465 SER D 11 REMARK 465 ASP D 12 REMARK 465 ALA D 13 REMARK 465 GLY D 14 REMARK 465 HIS D 120 REMARK 465 LYS D 121 REMARK 465 GLN D 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 76 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 76 174.29 -51.98 REMARK 500 PHE A 77 161.30 175.61 REMARK 500 THR A 118 -15.35 -49.55 REMARK 500 ALA C 46 58.90 38.98 REMARK 500 HIS C 109 147.84 -172.21 REMARK 500 GLU D 23 -69.12 -95.44 REMARK 500 SER D 24 -33.23 -34.87 REMARK 500 ASP D 74 108.21 -55.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 125 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC67511.1 RELATED DB: TARGETDB DBREF 3NJA A 1 122 UNP Q7NXP4 Q7NXP4_CHRVO 1 122 DBREF 3NJA B 1 122 UNP Q7NXP4 Q7NXP4_CHRVO 1 122 DBREF 3NJA C 1 122 UNP Q7NXP4 Q7NXP4_CHRVO 1 122 DBREF 3NJA D 1 122 UNP Q7NXP4 Q7NXP4_CHRVO 1 122 SEQADV 3NJA SER A -2 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ASN A -1 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ALA A 0 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA SER B -2 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ASN B -1 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ALA B 0 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA SER C -2 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ASN C -1 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ALA C 0 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA SER D -2 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ASN D -1 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ALA D 0 UNP Q7NXP4 EXPRESSION TAG SEQRES 1 A 125 SER ASN ALA MSE ALA GLU LYS LEU LEU HIS THR ALA GLU SEQRES 2 A 125 SER ASP ALA GLY ILE GLY SER TRP VAL LEU HIS MSE GLU SEQRES 3 A 125 SER GLY ARG LEU GLU TRP SER GLN ALA VAL HIS ASP ILE SEQRES 4 A 125 PHE GLY THR ASP SER ALA THR PHE ASP ALA THR GLU ASP SEQRES 5 A 125 ALA TYR PHE GLN ARG VAL HIS PRO ASP ASP ARG ALA ARG SEQRES 6 A 125 VAL ARG ARG GLU LEU ASP ARG HIS VAL LEU GLY ASP ARG SEQRES 7 A 125 PRO PHE ASP VAL GLU TYR ARG ILE VAL ARG PRO ASP GLY SEQRES 8 A 125 GLN VAL ARG GLU LEU LEU GLU ARG ASN HIS ILE GLN ARG SEQRES 9 A 125 GLN ALA SER GLY GLN VAL ASP HIS LEU TRP GLY THR VAL SEQRES 10 A 125 ILE ASP MSE THR GLU HIS LYS GLN SEQRES 1 B 125 SER ASN ALA MSE ALA GLU LYS LEU LEU HIS THR ALA GLU SEQRES 2 B 125 SER ASP ALA GLY ILE GLY SER TRP VAL LEU HIS MSE GLU SEQRES 3 B 125 SER GLY ARG LEU GLU TRP SER GLN ALA VAL HIS ASP ILE SEQRES 4 B 125 PHE GLY THR ASP SER ALA THR PHE ASP ALA THR GLU ASP SEQRES 5 B 125 ALA TYR PHE GLN ARG VAL HIS PRO ASP ASP ARG ALA ARG SEQRES 6 B 125 VAL ARG ARG GLU LEU ASP ARG HIS VAL LEU GLY ASP ARG SEQRES 7 B 125 PRO PHE ASP VAL GLU TYR ARG ILE VAL ARG PRO ASP GLY SEQRES 8 B 125 GLN VAL ARG GLU LEU LEU GLU ARG ASN HIS ILE GLN ARG SEQRES 9 B 125 GLN ALA SER GLY GLN VAL ASP HIS LEU TRP GLY THR VAL SEQRES 10 B 125 ILE ASP MSE THR GLU HIS LYS GLN SEQRES 1 C 125 SER ASN ALA MSE ALA GLU LYS LEU LEU HIS THR ALA GLU SEQRES 2 C 125 SER ASP ALA GLY ILE GLY SER TRP VAL LEU HIS MSE GLU SEQRES 3 C 125 SER GLY ARG LEU GLU TRP SER GLN ALA VAL HIS ASP ILE SEQRES 4 C 125 PHE GLY THR ASP SER ALA THR PHE ASP ALA THR GLU ASP SEQRES 5 C 125 ALA TYR PHE GLN ARG VAL HIS PRO ASP ASP ARG ALA ARG SEQRES 6 C 125 VAL ARG ARG GLU LEU ASP ARG HIS VAL LEU GLY ASP ARG SEQRES 7 C 125 PRO PHE ASP VAL GLU TYR ARG ILE VAL ARG PRO ASP GLY SEQRES 8 C 125 GLN VAL ARG GLU LEU LEU GLU ARG ASN HIS ILE GLN ARG SEQRES 9 C 125 GLN ALA SER GLY GLN VAL ASP HIS LEU TRP GLY THR VAL SEQRES 10 C 125 ILE ASP MSE THR GLU HIS LYS GLN SEQRES 1 D 125 SER ASN ALA MSE ALA GLU LYS LEU LEU HIS THR ALA GLU SEQRES 2 D 125 SER ASP ALA GLY ILE GLY SER TRP VAL LEU HIS MSE GLU SEQRES 3 D 125 SER GLY ARG LEU GLU TRP SER GLN ALA VAL HIS ASP ILE SEQRES 4 D 125 PHE GLY THR ASP SER ALA THR PHE ASP ALA THR GLU ASP SEQRES 5 D 125 ALA TYR PHE GLN ARG VAL HIS PRO ASP ASP ARG ALA ARG SEQRES 6 D 125 VAL ARG ARG GLU LEU ASP ARG HIS VAL LEU GLY ASP ARG SEQRES 7 D 125 PRO PHE ASP VAL GLU TYR ARG ILE VAL ARG PRO ASP GLY SEQRES 8 D 125 GLN VAL ARG GLU LEU LEU GLU ARG ASN HIS ILE GLN ARG SEQRES 9 D 125 GLN ALA SER GLY GLN VAL ASP HIS LEU TRP GLY THR VAL SEQRES 10 D 125 ILE ASP MSE THR GLU HIS LYS GLN MODRES 3NJA MSE A 22 MET SELENOMETHIONINE MODRES 3NJA MSE A 117 MET SELENOMETHIONINE MODRES 3NJA MSE B 22 MET SELENOMETHIONINE MODRES 3NJA MSE B 117 MET SELENOMETHIONINE MODRES 3NJA MSE C 22 MET SELENOMETHIONINE MODRES 3NJA MSE C 117 MET SELENOMETHIONINE MODRES 3NJA MSE D 22 MET SELENOMETHIONINE MODRES 3NJA MSE D 117 MET SELENOMETHIONINE HET MSE A 22 8 HET MSE A 117 8 HET MSE B 22 8 HET MSE B 117 8 HET MSE C 22 8 HET MSE C 117 8 HET MSE D 22 8 HET MSE D 117 8 HET GOL A 123 6 HET GOL B 123 6 HET SO4 B 124 5 HET SO4 C 123 5 HET CL C 124 1 HET GOL D 123 6 HET GOL D 124 6 HET CL D 125 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 CL 2(CL 1-) FORMUL 13 HOH *21(H2 O) HELIX 1 1 SER A 30 GLY A 38 1 9 HELIX 2 2 THR A 47 VAL A 55 1 9 HELIX 3 3 ASP A 59 GLY A 73 1 15 HELIX 4 4 SER B 30 GLY B 38 1 9 HELIX 5 5 ASP B 40 PHE B 44 5 5 HELIX 6 6 THR B 47 ARG B 54 1 8 HELIX 7 7 ASP B 59 LEU B 72 1 14 HELIX 8 8 SER C 30 GLY C 38 1 9 HELIX 9 9 THR C 47 GLN C 53 1 7 HELIX 10 10 ASP C 59 LEU C 72 1 14 HELIX 11 11 SER D 30 GLY D 38 1 9 HELIX 12 12 THR D 47 GLN D 53 1 7 HELIX 13 13 HIS D 56 LEU D 72 1 17 SHEET 1 A 5 ARG A 26 TRP A 29 0 SHEET 2 A 5 GLY A 16 HIS A 21 -1 N HIS A 21 O ARG A 26 SHEET 3 A 5 VAL B 107 ASP B 116 -1 O GLY B 112 N TRP A 18 SHEET 4 A 5 VAL B 90 ARG B 101 -1 N LEU B 94 O ILE B 115 SHEET 5 A 5 PHE B 77 VAL B 84 -1 N PHE B 77 O ASN B 97 SHEET 1 B 5 PHE A 77 VAL A 84 0 SHEET 2 B 5 VAL A 90 ARG A 101 -1 O ASN A 97 N PHE A 77 SHEET 3 B 5 VAL A 107 ASP A 116 -1 O ASP A 108 N GLN A 100 SHEET 4 B 5 GLY B 16 HIS B 21 -1 O TRP B 18 N GLY A 112 SHEET 5 B 5 LEU B 27 TRP B 29 -1 O GLU B 28 N VAL B 19 SHEET 1 C 5 LEU C 27 TRP C 29 0 SHEET 2 C 5 GLY C 16 HIS C 21 -1 N VAL C 19 O GLU C 28 SHEET 3 C 5 VAL D 107 ASP D 116 -1 O LEU D 110 N LEU C 20 SHEET 4 C 5 VAL D 90 ARG D 101 -1 N GLN D 100 O ASP D 108 SHEET 5 C 5 PHE D 77 VAL D 84 -1 N PHE D 77 O ASN D 97 SHEET 1 D 5 PHE C 77 VAL C 84 0 SHEET 2 D 5 VAL C 90 ARG C 101 -1 O LEU C 93 N TYR C 81 SHEET 3 D 5 VAL C 107 ASP C 116 -1 O TRP C 111 N HIS C 98 SHEET 4 D 5 GLY D 16 HIS D 21 -1 O LEU D 20 N LEU C 110 SHEET 5 D 5 LEU D 27 TRP D 29 -1 O GLU D 28 N VAL D 19 LINK C HIS A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N GLU A 23 1555 1555 1.33 LINK C ASP A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N THR A 118 1555 1555 1.33 LINK C HIS B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N GLU B 23 1555 1555 1.32 LINK C ASP B 116 N MSE B 117 1555 1555 1.33 LINK C MSE B 117 N THR B 118 1555 1555 1.32 LINK C HIS C 21 N MSE C 22 1555 1555 1.32 LINK C MSE C 22 N GLU C 23 1555 1555 1.32 LINK C ASP C 116 N MSE C 117 1555 1555 1.33 LINK C MSE C 117 N THR C 118 1555 1555 1.33 LINK C HIS D 21 N MSE D 22 1555 1555 1.33 LINK C MSE D 22 N GLU D 23 1555 1555 1.33 LINK C ASP D 116 N MSE D 117 1555 1555 1.33 LINK C MSE D 117 N THR D 118 1555 1555 1.33 SITE 1 AC1 5 GLU A 95 TRP B 18 LEU B 20 TRP B 29 SITE 2 AC1 5 TYR B 51 SITE 1 AC2 7 TRP A 18 LEU A 27 TRP A 29 TYR A 51 SITE 2 AC2 7 TYR B 81 GLU B 95 VAL B 114 SITE 1 AC3 3 PRO B 76 ARG B 96 HIS B 98 SITE 1 AC4 3 ARG C 96 HIS C 98 ARG D 96 SITE 1 AC5 1 ARG C 75 SITE 1 AC6 5 GLU C 95 TRP D 18 LEU D 27 TRP D 29 SITE 2 AC6 5 TYR D 51 SITE 1 AC7 5 TRP C 18 LEU C 27 TRP C 29 TYR D 81 SITE 2 AC7 5 GLU D 95 SITE 1 AC8 2 HIS D 70 ARG D 75 CRYST1 60.570 65.527 123.423 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008102 0.00000 MASTER 439 0 16 13 20 0 12 6 0 0 0 40 END