HEADER OXIDOREDUCTASE 09-JUN-10 3NF4 TITLE CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE FROM MYCOBACTERIUM TITLE 2 THERMORESISTIBILE BOUND TO FLAVIN ADENINE DINUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 FAD, FADH, TUBERCULOSIS, ACYL-COA, DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 22-APR-15 3NF4 1 JRNL VERSN REVDAT 1 23-JUN-10 3NF4 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 33892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2286 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.08000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 3.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5603 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7616 ; 1.453 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 729 ; 5.445 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;34.436 ;23.260 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;16.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 863 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4257 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3631 ; 0.639 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5730 ; 1.219 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1972 ; 2.047 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1886 ; 3.324 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 175 6 REMARK 3 1 B 1 B 175 6 REMARK 3 2 A 185 A 370 6 REMARK 3 2 B 185 B 370 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2492 ; 0.350 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2492 ; 3.150 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8952 48.4781 73.6284 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.0832 REMARK 3 T33: 0.3082 T12: 0.0004 REMARK 3 T13: 0.0573 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.9063 L22: 0.4230 REMARK 3 L33: 0.0962 L12: 0.1205 REMARK 3 L13: -0.1349 L23: -0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: -0.0219 S13: -0.3826 REMARK 3 S21: 0.2026 S22: -0.0344 S23: -0.0752 REMARK 3 S31: -0.0903 S32: 0.0106 S33: 0.1003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5589 76.6943 57.0550 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.2334 REMARK 3 T33: 0.1755 T12: 0.0017 REMARK 3 T13: 0.0387 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 0.8039 L22: 0.0533 REMARK 3 L33: 0.4538 L12: -0.0276 REMARK 3 L13: 0.2049 L23: -0.1182 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: 0.1919 S13: -0.0435 REMARK 3 S21: 0.0622 S22: 0.0030 S23: 0.0109 REMARK 3 S31: -0.0375 S32: -0.0019 S33: 0.0320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3NF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DVL MOLECULE A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 69.7 MG/ML PROTEIN AGAINST PACT SCREEN REMARK 280 CONDITION E11, 0.2 M NA CITRATE, 20% PEG 3350 WITH 20% ETHYLENE REMARK 280 GLYCOL AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 215726E11, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.82500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.82500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.61500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.61500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.82500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 95.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 148.84500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 HIS A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 180 REMARK 465 GLY A 181 REMARK 465 ARG A 272 REMARK 465 THR A 273 REMARK 465 ALA A 274 REMARK 465 PHE A 275 REMARK 465 GLY A 276 REMARK 465 ARG A 277 REMARK 465 GLN A 283 REMARK 465 ARG A 383 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 HIS B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 135 REMARK 465 ALA B 136 REMARK 465 GLY B 137 REMARK 465 SER B 138 REMARK 465 ASP B 139 REMARK 465 ALA B 140 REMARK 465 ALA B 141 REMARK 465 ALA B 142 REMARK 465 LEU B 143 REMARK 465 GLY B 179 REMARK 465 GLU B 180 REMARK 465 ARG B 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 5 CG SD CE REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 226 CG OD1 OD2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 HIS A 282 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 350 CG OD1 OD2 REMARK 470 MET B 5 CG SD CE REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 PHE B 217 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 224 CG OD1 OD2 REMARK 470 GLU B 271 CG CD OE1 OE2 REMARK 470 ARG B 379 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 24.35 -151.60 REMARK 500 LEU A 131 -47.58 -131.37 REMARK 500 ALA A 136 92.71 -164.26 REMARK 500 ARG A 144 -5.45 -140.64 REMARK 500 LYS A 168 -0.96 -141.20 REMARK 500 ARG A 183 41.67 -89.36 REMARK 500 TYR A 316 16.61 -146.31 REMARK 500 SER B 59 39.06 -144.73 REMARK 500 LEU B 131 -40.51 -134.44 REMARK 500 ARG B 183 54.53 -93.62 REMARK 500 TYR B 316 12.53 -150.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL B 353 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 384 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 124 OE1 REMARK 620 2 GLU B 124 OE2 45.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 384 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYTHA.00185.A RELATED DB: TARGETDB DBREF 3NF4 A -3 383 PDB 3NF4 3NF4 -3 383 DBREF 3NF4 B -3 383 PDB 3NF4 3NF4 -3 383 SEQRES 1 A 387 GLY PRO GLY SER MET ILE HIS PRO MET ALA VAL ASP ARG SEQRES 2 A 387 LEU LEU PRO SER GLN GLU ALA ALA GLU LEU ILE GLU LEU SEQRES 3 A 387 THR ARG GLU ILE ALA ASP LYS VAL LEU ASP PRO ILE VAL SEQRES 4 A 387 ASP ARG HIS GLU LYS ASP GLU THR TYR PRO GLU GLY VAL SEQRES 5 A 387 PHE GLU GLN LEU GLY ALA ALA GLY LEU LEU SER LEU PRO SEQRES 6 A 387 GLN PRO GLU GLU TRP GLY GLY GLY GLY GLN PRO TYR GLU SEQRES 7 A 387 VAL TYR LEU GLN VAL LEU GLU GLU ILE ALA ALA ARG TRP SEQRES 8 A 387 ALA SER VAL ALA VAL ALA VAL SER VAL HIS SER LEU SER SEQRES 9 A 387 SER HIS PRO LEU LEU VAL PHE GLY THR GLU GLU GLN LYS SEQRES 10 A 387 LYS ARG TRP LEU PRO GLY MET LEU SER GLY GLU GLN ILE SEQRES 11 A 387 GLY ALA TYR SER LEU SER GLU PRO GLN ALA GLY SER ASP SEQRES 12 A 387 ALA ALA ALA LEU ARG CYS ALA ALA THR PRO THR ASP GLY SEQRES 13 A 387 GLY TYR VAL ILE ASN GLY SER LYS SER TRP ILE THR HIS SEQRES 14 A 387 GLY GLY LYS ALA ASP PHE TYR THR LEU PHE ALA ARG THR SEQRES 15 A 387 GLY GLU GLY SER ARG GLY VAL SER CYS PHE LEU VAL PRO SEQRES 16 A 387 ALA ASP GLN PRO GLY LEU SER PHE GLY LYS PRO GLU GLU SEQRES 17 A 387 LYS MET GLY LEU HIS ALA VAL PRO THR THR SER ALA PHE SEQRES 18 A 387 TYR ASP ASN ALA ARG ILE ASP ALA ASP ARG ARG ILE GLY SEQRES 19 A 387 GLU GLU GLY GLN GLY LEU GLN ILE ALA PHE SER ALA LEU SEQRES 20 A 387 ASP SER GLY ARG LEU GLY ILE ALA ALA VAL ALA THR GLY SEQRES 21 A 387 LEU ALA GLN ALA ALA LEU ASP GLU ALA VAL ALA TYR ALA SEQRES 22 A 387 ASN GLU ARG THR ALA PHE GLY ARG LYS ILE ILE ASP HIS SEQRES 23 A 387 GLN GLY LEU GLY PHE LEU LEU ALA ASP MET ALA ALA ALA SEQRES 24 A 387 VAL ALA THR ALA ARG ALA THR TYR LEU ASP ALA ALA ARG SEQRES 25 A 387 ARG ARG ASP GLN GLY ARG PRO TYR SER GLN GLN ALA SER SEQRES 26 A 387 ILE ALA LYS LEU THR ALA THR ASP ALA ALA MET LYS VAL SEQRES 27 A 387 THR THR ASP ALA VAL GLN VAL PHE GLY GLY VAL GLY TYR SEQRES 28 A 387 THR ARG ASP TYR ARG VAL GLU ARG TYR MET ARG GLU ALA SEQRES 29 A 387 LYS ILE MET GLN ILE PHE GLU GLY THR ASN GLN ILE GLN SEQRES 30 A 387 ARG LEU VAL ILE ALA ARG GLY LEU THR ARG SEQRES 1 B 387 GLY PRO GLY SER MET ILE HIS PRO MET ALA VAL ASP ARG SEQRES 2 B 387 LEU LEU PRO SER GLN GLU ALA ALA GLU LEU ILE GLU LEU SEQRES 3 B 387 THR ARG GLU ILE ALA ASP LYS VAL LEU ASP PRO ILE VAL SEQRES 4 B 387 ASP ARG HIS GLU LYS ASP GLU THR TYR PRO GLU GLY VAL SEQRES 5 B 387 PHE GLU GLN LEU GLY ALA ALA GLY LEU LEU SER LEU PRO SEQRES 6 B 387 GLN PRO GLU GLU TRP GLY GLY GLY GLY GLN PRO TYR GLU SEQRES 7 B 387 VAL TYR LEU GLN VAL LEU GLU GLU ILE ALA ALA ARG TRP SEQRES 8 B 387 ALA SER VAL ALA VAL ALA VAL SER VAL HIS SER LEU SER SEQRES 9 B 387 SER HIS PRO LEU LEU VAL PHE GLY THR GLU GLU GLN LYS SEQRES 10 B 387 LYS ARG TRP LEU PRO GLY MET LEU SER GLY GLU GLN ILE SEQRES 11 B 387 GLY ALA TYR SER LEU SER GLU PRO GLN ALA GLY SER ASP SEQRES 12 B 387 ALA ALA ALA LEU ARG CYS ALA ALA THR PRO THR ASP GLY SEQRES 13 B 387 GLY TYR VAL ILE ASN GLY SER LYS SER TRP ILE THR HIS SEQRES 14 B 387 GLY GLY LYS ALA ASP PHE TYR THR LEU PHE ALA ARG THR SEQRES 15 B 387 GLY GLU GLY SER ARG GLY VAL SER CYS PHE LEU VAL PRO SEQRES 16 B 387 ALA ASP GLN PRO GLY LEU SER PHE GLY LYS PRO GLU GLU SEQRES 17 B 387 LYS MET GLY LEU HIS ALA VAL PRO THR THR SER ALA PHE SEQRES 18 B 387 TYR ASP ASN ALA ARG ILE ASP ALA ASP ARG ARG ILE GLY SEQRES 19 B 387 GLU GLU GLY GLN GLY LEU GLN ILE ALA PHE SER ALA LEU SEQRES 20 B 387 ASP SER GLY ARG LEU GLY ILE ALA ALA VAL ALA THR GLY SEQRES 21 B 387 LEU ALA GLN ALA ALA LEU ASP GLU ALA VAL ALA TYR ALA SEQRES 22 B 387 ASN GLU ARG THR ALA PHE GLY ARG LYS ILE ILE ASP HIS SEQRES 23 B 387 GLN GLY LEU GLY PHE LEU LEU ALA ASP MET ALA ALA ALA SEQRES 24 B 387 VAL ALA THR ALA ARG ALA THR TYR LEU ASP ALA ALA ARG SEQRES 25 B 387 ARG ARG ASP GLN GLY ARG PRO TYR SER GLN GLN ALA SER SEQRES 26 B 387 ILE ALA LYS LEU THR ALA THR ASP ALA ALA MET LYS VAL SEQRES 27 B 387 THR THR ASP ALA VAL GLN VAL PHE GLY GLY VAL GLY TYR SEQRES 28 B 387 THR ARG ASP TYR ARG VAL GLU ARG TYR MET ARG GLU ALA SEQRES 29 B 387 LYS ILE MET GLN ILE PHE GLU GLY THR ASN GLN ILE GLN SEQRES 30 B 387 ARG LEU VAL ILE ALA ARG GLY LEU THR ARG HET FAD A 384 53 HET NA B 384 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NA SODIUM ION FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 NA NA 1+ FORMUL 5 HOH *169(H2 O) HELIX 1 1 SER A 13 LEU A 31 1 19 HELIX 2 2 ILE A 34 GLU A 42 1 9 HELIX 3 3 GLY A 47 ALA A 54 1 8 HELIX 4 4 PRO A 63 GLY A 67 5 5 HELIX 5 5 PRO A 72 ALA A 85 1 14 HELIX 6 6 TRP A 87 SER A 101 1 15 HELIX 7 7 SER A 101 GLY A 108 1 8 HELIX 8 8 THR A 109 LEU A 121 1 13 HELIX 9 9 ASP A 139 LEU A 143 5 5 HELIX 10 10 GLN A 234 ALA A 242 1 9 HELIX 11 11 ALA A 242 GLU A 271 1 30 HELIX 12 12 GLY A 284 GLN A 312 1 29 HELIX 13 13 TYR A 316 GLY A 343 1 28 HELIX 14 14 GLY A 344 THR A 348 5 5 HELIX 15 15 ARG A 352 GLN A 364 1 13 HELIX 16 16 THR A 369 GLY A 380 1 12 HELIX 17 17 SER B 13 LEU B 31 1 19 HELIX 18 18 ILE B 34 GLU B 42 1 9 HELIX 19 19 GLY B 47 ALA B 55 1 9 HELIX 20 20 PRO B 63 GLY B 67 5 5 HELIX 21 21 PRO B 72 ALA B 85 1 14 HELIX 22 22 TRP B 87 SER B 101 1 15 HELIX 23 23 SER B 101 GLY B 108 1 8 HELIX 24 24 THR B 109 LEU B 121 1 13 HELIX 25 25 GLN B 234 SER B 241 1 8 HELIX 26 26 ALA B 242 ASN B 270 1 29 HELIX 27 27 HIS B 282 GLN B 312 1 31 HELIX 28 28 TYR B 316 GLY B 343 1 28 HELIX 29 29 GLY B 344 THR B 348 5 5 HELIX 30 30 ARG B 352 GLN B 364 1 13 HELIX 31 31 THR B 369 GLY B 380 1 12 SHEET 1 A 4 GLY A 127 SER A 130 0 SHEET 2 A 4 PHE A 171 ARG A 177 1 O THR A 173 N SER A 130 SHEET 3 A 4 VAL A 185 PRO A 191 -1 O VAL A 190 N TYR A 172 SHEET 4 A 4 ARG A 228 ILE A 229 -1 O ILE A 229 N CYS A 187 SHEET 1 B 4 ALA A 146 THR A 150 0 SHEET 2 B 4 GLY A 153 THR A 164 -1 O VAL A 155 N THR A 148 SHEET 3 B 4 THR A 213 ASP A 224 -1 O TYR A 218 N GLY A 158 SHEET 4 B 4 LEU A 197 PHE A 199 -1 N SER A 198 O PHE A 217 SHEET 1 C 4 GLY B 127 SER B 130 0 SHEET 2 C 4 PHE B 171 ARG B 177 1 O THR B 173 N SER B 130 SHEET 3 C 4 VAL B 185 PRO B 191 -1 O PHE B 188 N LEU B 174 SHEET 4 C 4 ARG B 228 ILE B 229 -1 O ILE B 229 N CYS B 187 SHEET 1 D 4 ALA B 146 THR B 150 0 SHEET 2 D 4 GLY B 153 THR B 164 -1 O VAL B 155 N THR B 148 SHEET 3 D 4 THR B 213 ASP B 224 -1 O ILE B 223 N TYR B 154 SHEET 4 D 4 LEU B 197 PHE B 199 -1 N SER B 198 O PHE B 217 SHEET 1 E 2 THR B 273 ALA B 274 0 SHEET 2 E 2 ARG B 277 LYS B 278 -1 O ARG B 277 N ALA B 274 LINK OE1 GLU B 124 NA NA B 384 1555 1555 2.67 LINK OE2 GLU B 124 NA NA B 384 1555 1555 2.95 SITE 1 AC1 24 TYR A 129 LEU A 131 SER A 132 GLY A 137 SITE 2 AC1 24 SER A 138 TRP A 162 THR A 164 ILE A 362 SITE 3 AC1 24 ILE A 365 THR A 369 GLN A 371 ILE A 372 SITE 4 AC1 24 HOH A 393 HOH A 409 HOH A 419 HOH A 429 SITE 5 AC1 24 ARG B 272 PHE B 275 ILE B 279 GLN B 283 SITE 6 AC1 24 GLN B 340 VAL B 341 GLY B 344 HOH B 453 SITE 1 AC2 1 GLU B 124 CRYST1 95.650 99.230 171.490 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005831 0.00000 MASTER 461 0 2 31 18 0 7 6 0 0 0 60 END