HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-JUN-10 3NEK TITLE CRYSTAL STRUCTURE OF A NITROGEN REPRESSOR-LIKE PROTEIN MJ0159 FROM TITLE 2 METHANOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REPRESSOR-LIKE PROTEIN MJ0159; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 GENE: MJ0159; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,Y.PATSKOVSKY,V.MALASHKEVICH,S.OZYURT,M.DICKEY,B.WU, AUTHOR 2 M.MALETIC,L.RODGERS,J.KOSS,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK AUTHOR 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 10-FEB-21 3NEK 1 AUTHOR JRNL REMARK LINK REVDAT 4 21-NOV-18 3NEK 1 AUTHOR REVDAT 3 08-NOV-17 3NEK 1 REMARK REVDAT 2 05-JAN-11 3NEK 1 JRNL REVDAT 1 23-JUN-10 3NEK 0 SPRSDE 23-JUN-10 3NEK 2QYX JRNL AUTH G.WISEDCHAISRI,D.M.DRANOW,T.J.LIE,J.B.BONANNO,Y.PATSKOVSKY, JRNL AUTH 2 S.A.OZYURT,J.M.SAUDER,S.C.ALMO,S.R.WASSERMAN,S.K.BURLEY, JRNL AUTH 3 J.A.LEIGH,T.GONEN JRNL TITL STRUCTURAL UNDERPINNINGS OF NITROGEN REGULATION BY THE JRNL TITL 2 PROTOTYPICAL NITROGEN-RESPONSIVE TRANSCRIPTIONAL FACTOR JRNL TITL 3 NRPR. JRNL REF STRUCTURE V. 18 1512 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 21070950 JRNL DOI 10.1016/J.STR.2010.08.014 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1053 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -2.24000 REMARK 3 B12 (A**2) : 0.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3580 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4814 ; 1.116 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 5.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;39.919 ;25.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;19.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.586 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2634 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2181 ; 0.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3529 ; 0.955 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1399 ; 1.343 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1285 ; 2.247 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 321 A 539 6 REMARK 3 1 B 321 B 539 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1741 ; 0.500 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1741 ; 1.950 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 540 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7090 -19.5580 -13.4080 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.0263 REMARK 3 T33: 0.2191 T12: 0.0339 REMARK 3 T13: -0.0532 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.6418 L22: 1.6964 REMARK 3 L33: 3.3975 L12: -0.4923 REMARK 3 L13: -1.1941 L23: -0.1881 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: -0.1428 S13: 0.0344 REMARK 3 S21: 0.0136 S22: 0.0937 S23: 0.1400 REMARK 3 S31: 0.1534 S32: 0.1517 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 319 B 539 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1780 -28.4600 -44.8110 REMARK 3 T TENSOR REMARK 3 T11: -0.0218 T22: 0.0479 REMARK 3 T33: 0.2294 T12: -0.0236 REMARK 3 T13: 0.0180 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 3.2163 L22: 2.7040 REMARK 3 L33: 2.0329 L12: 0.1227 REMARK 3 L13: -0.0054 L23: 0.5681 REMARK 3 S TENSOR REMARK 3 S11: -0.0976 S12: 0.2161 S13: -0.1822 REMARK 3 S21: -0.1367 S22: -0.0018 S23: -0.1553 REMARK 3 S31: -0.0149 S32: 0.0364 S33: 0.0993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15322 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM MES PH 7.0, 40% MPD, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.80700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.61400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.61400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.80700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 LYS A 307 REMARK 465 LYS A 308 REMARK 465 ASN A 309 REMARK 465 PRO A 310 REMARK 465 ARG A 311 REMARK 465 ASP A 312 REMARK 465 ILE A 313 REMARK 465 VAL A 314 REMARK 465 THR A 315 REMARK 465 LYS A 316 REMARK 465 LYS A 317 REMARK 465 ALA A 318 REMARK 465 ASN A 319 REMARK 465 ILE A 320 REMARK 465 GLU A 541 REMARK 465 ILE A 542 REMARK 465 SER B 305 REMARK 465 LEU B 306 REMARK 465 LYS B 307 REMARK 465 LYS B 308 REMARK 465 ASN B 309 REMARK 465 PRO B 310 REMARK 465 ARG B 311 REMARK 465 ASP B 312 REMARK 465 ILE B 313 REMARK 465 VAL B 314 REMARK 465 THR B 315 REMARK 465 LYS B 316 REMARK 465 LYS B 317 REMARK 465 ALA B 318 REMARK 465 LYS B 540 REMARK 465 GLU B 541 REMARK 465 ILE B 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 377 171.63 67.62 REMARK 500 ASP A 387 -25.46 -145.49 REMARK 500 GLU A 451 -46.21 -137.49 REMARK 500 SER B 377 -172.17 74.72 REMARK 500 THR B 421 -159.74 -115.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10196A RELATED DB: TARGETDB DBREF 3NEK A 306 542 UNP Q57623 Y159_METJA 306 542 DBREF 3NEK B 306 542 UNP Q57623 Y159_METJA 306 542 SEQADV 3NEK SER A 305 UNP Q57623 EXPRESSION TAG SEQADV 3NEK SER B 305 UNP Q57623 EXPRESSION TAG SEQRES 1 A 238 SER LEU LYS LYS ASN PRO ARG ASP ILE VAL THR LYS LYS SEQRES 2 A 238 ALA ASN ILE ARG ILE LYS THR ALA LEU SER LYS MSE PHE SEQRES 3 A 238 ASN ALA MSE ALA LYS VAL THR TYR ASP ILE ASP GLU ALA SEQRES 4 A 238 ASP GLY ASP VAL ILE VAL ASN THR ALA PHE ILE ASP LYS SEQRES 5 A 238 LYS TYR LEU ASP GLU ALA PHE ASP ILE LEU LYS GLU ALA SEQRES 6 A 238 TYR LYS LYS GLY LEU GLY ILE SER ASP ARG PHE GLY ILE SEQRES 7 A 238 VAL GLU GLU ASN ASP ARG ILE LYS ILE GLN THR ILE CYS SEQRES 8 A 238 ALA VAL THR LEU ASP GLY ILE PHE LEU ARG ASN SER VAL SEQRES 9 A 238 PRO LEU ILE PRO LYS TYR GLY GLY ILE LEU GLU ILE THR SEQRES 10 A 238 GLU ASP LYS GLU ARG PHE ILE ASP ILE ILE GLY TYR ASP SEQRES 11 A 238 GLY SER SER LEU ASP PRO HIS GLU VAL PHE PHE ASN PHE SEQRES 12 A 238 VAL ASP CYS GLU LYS THR PHE LEU ALA GLY PHE ARG GLU SEQRES 13 A 238 VAL HIS ARG VAL ALA ARG GLU LYS LEU GLU GLU VAL LEU SEQRES 14 A 238 LYS LYS LEU ASN TRP ASN GLY ILE LYS ALA ILE GLY GLU SEQRES 15 A 238 PRO ASN ASN GLU LEU TYR GLY ILE GLY VAL ASN LYS ASP SEQRES 16 A 238 MSE CYS GLY VAL VAL THR MSE GLY GLY ILE ASN PRO LEU SEQRES 17 A 238 VAL LEU LEU LYS GLU ASN GLU ILE PRO ILE GLU LEU LYS SEQRES 18 A 238 ALA MSE HIS GLU VAL VAL ARG PHE SER ASP LEU LYS SER SEQRES 19 A 238 TYR LYS GLU ILE SEQRES 1 B 238 SER LEU LYS LYS ASN PRO ARG ASP ILE VAL THR LYS LYS SEQRES 2 B 238 ALA ASN ILE ARG ILE LYS THR ALA LEU SER LYS MSE PHE SEQRES 3 B 238 ASN ALA MSE ALA LYS VAL THR TYR ASP ILE ASP GLU ALA SEQRES 4 B 238 ASP GLY ASP VAL ILE VAL ASN THR ALA PHE ILE ASP LYS SEQRES 5 B 238 LYS TYR LEU ASP GLU ALA PHE ASP ILE LEU LYS GLU ALA SEQRES 6 B 238 TYR LYS LYS GLY LEU GLY ILE SER ASP ARG PHE GLY ILE SEQRES 7 B 238 VAL GLU GLU ASN ASP ARG ILE LYS ILE GLN THR ILE CYS SEQRES 8 B 238 ALA VAL THR LEU ASP GLY ILE PHE LEU ARG ASN SER VAL SEQRES 9 B 238 PRO LEU ILE PRO LYS TYR GLY GLY ILE LEU GLU ILE THR SEQRES 10 B 238 GLU ASP LYS GLU ARG PHE ILE ASP ILE ILE GLY TYR ASP SEQRES 11 B 238 GLY SER SER LEU ASP PRO HIS GLU VAL PHE PHE ASN PHE SEQRES 12 B 238 VAL ASP CYS GLU LYS THR PHE LEU ALA GLY PHE ARG GLU SEQRES 13 B 238 VAL HIS ARG VAL ALA ARG GLU LYS LEU GLU GLU VAL LEU SEQRES 14 B 238 LYS LYS LEU ASN TRP ASN GLY ILE LYS ALA ILE GLY GLU SEQRES 15 B 238 PRO ASN ASN GLU LEU TYR GLY ILE GLY VAL ASN LYS ASP SEQRES 16 B 238 MSE CYS GLY VAL VAL THR MSE GLY GLY ILE ASN PRO LEU SEQRES 17 B 238 VAL LEU LEU LYS GLU ASN GLU ILE PRO ILE GLU LEU LYS SEQRES 18 B 238 ALA MSE HIS GLU VAL VAL ARG PHE SER ASP LEU LYS SER SEQRES 19 B 238 TYR LYS GLU ILE MODRES 3NEK MSE A 329 MET SELENOMETHIONINE MODRES 3NEK MSE A 333 MET SELENOMETHIONINE MODRES 3NEK MSE A 500 MET SELENOMETHIONINE MODRES 3NEK MSE A 506 MET SELENOMETHIONINE MODRES 3NEK MSE A 527 MET SELENOMETHIONINE MODRES 3NEK MSE B 329 MET SELENOMETHIONINE MODRES 3NEK MSE B 333 MET SELENOMETHIONINE MODRES 3NEK MSE B 500 MET SELENOMETHIONINE MODRES 3NEK MSE B 506 MET SELENOMETHIONINE MODRES 3NEK MSE B 527 MET SELENOMETHIONINE HET MSE A 329 8 HET MSE A 333 8 HET MSE A 500 8 HET MSE A 506 8 HET MSE A 527 8 HET MSE B 329 8 HET MSE B 333 8 HET MSE B 500 8 HET MSE B 506 8 HET MSE B 527 8 HET GOL A 1 6 HET GOL A 3 6 HET GOL B 2 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *14(H2 O) HELIX 1 1 THR A 324 ALA A 334 1 11 HELIX 2 2 TYR A 358 LYS A 372 1 15 HELIX 3 3 ALA A 396 ASN A 406 1 11 HELIX 4 4 ASP A 439 PHE A 444 1 6 HELIX 5 5 PHE A 445 VAL A 448 5 4 HELIX 6 6 ALA A 465 ASN A 477 1 13 HELIX 7 7 ILE A 509 ASN A 518 1 10 HELIX 8 8 SER A 534 LEU A 536 5 3 HELIX 9 9 THR B 324 VAL B 336 1 13 HELIX 10 10 TYR B 358 LYS B 372 1 15 HELIX 11 11 CYS B 395 ARG B 405 1 11 HELIX 12 12 ASP B 439 PHE B 445 1 7 HELIX 13 13 ASN B 446 VAL B 448 5 3 HELIX 14 14 ALA B 465 ASN B 477 1 13 HELIX 15 15 ILE B 509 ASN B 518 1 10 HELIX 16 16 SER B 534 LEU B 536 5 3 SHEET 1 A 5 GLU A 523 ARG A 532 0 SHEET 2 A 5 ASP A 346 ASP A 355 -1 N VAL A 347 O VAL A 531 SHEET 3 A 5 ARG A 388 ILE A 394 -1 O THR A 393 N ASN A 350 SHEET 4 A 5 ARG A 379 GLU A 384 -1 N GLY A 381 O GLN A 392 SHEET 5 A 5 LYS A 537 SER A 538 -1 O LYS A 537 N PHE A 380 SHEET 1 B 5 GLU A 425 GLY A 432 0 SHEET 2 B 5 LEU A 410 ILE A 420 -1 N GLU A 419 O ARG A 426 SHEET 3 B 5 THR A 453 HIS A 462 -1 O PHE A 454 N LEU A 418 SHEET 4 B 5 MSE A 500 MSE A 506 -1 O VAL A 503 N ARG A 459 SHEET 5 B 5 ILE A 481 ILE A 484 -1 N LYS A 482 O VAL A 504 SHEET 1 C 5 GLU B 523 ARG B 532 0 SHEET 2 C 5 ASP B 346 ASP B 355 -1 N PHE B 353 O GLU B 523 SHEET 3 C 5 ARG B 388 ILE B 394 -1 O THR B 393 N ASN B 350 SHEET 4 C 5 ARG B 379 GLU B 384 -1 N GLY B 381 O GLN B 392 SHEET 5 C 5 LYS B 537 SER B 538 -1 O LYS B 537 N PHE B 380 SHEET 1 D 5 GLU B 425 GLY B 432 0 SHEET 2 D 5 LEU B 410 ILE B 420 -1 N GLU B 419 O ARG B 426 SHEET 3 D 5 THR B 453 HIS B 462 -1 O PHE B 454 N LEU B 418 SHEET 4 D 5 MSE B 500 MSE B 506 -1 O CYS B 501 N VAL B 461 SHEET 5 D 5 ILE B 481 ILE B 484 -1 N LYS B 482 O VAL B 504 LINK C LYS A 328 N MSE A 329 1555 1555 1.33 LINK C MSE A 329 N PHE A 330 1555 1555 1.33 LINK C ALA A 332 N MSE A 333 1555 1555 1.33 LINK C MSE A 333 N ALA A 334 1555 1555 1.33 LINK C ASP A 499 N MSE A 500 1555 1555 1.33 LINK C MSE A 500 N CYS A 501 1555 1555 1.33 LINK C THR A 505 N MSE A 506 1555 1555 1.33 LINK C MSE A 506 N GLY A 507 1555 1555 1.33 LINK C ALA A 526 N MSE A 527 1555 1555 1.34 LINK C MSE A 527 N HIS A 528 1555 1555 1.33 LINK C LYS B 328 N MSE B 329 1555 1555 1.33 LINK C MSE B 329 N PHE B 330 1555 1555 1.34 LINK C ALA B 332 N MSE B 333 1555 1555 1.34 LINK C MSE B 333 N ALA B 334 1555 1555 1.34 LINK C ASP B 499 N MSE B 500 1555 1555 1.33 LINK C MSE B 500 N CYS B 501 1555 1555 1.33 LINK C THR B 505 N MSE B 506 1555 1555 1.32 LINK C MSE B 506 N GLY B 507 1555 1555 1.32 LINK C ALA B 526 N MSE B 527 1555 1555 1.34 LINK C MSE B 527 N HIS B 528 1555 1555 1.33 SITE 1 AC1 6 ASN A 350 ALA A 396 TYR A 433 HIS A 441 SITE 2 AC1 6 ARG A 459 GLY A 508 SITE 1 AC2 3 LYS A 482 MSE A 506 TYR A 539 SITE 1 AC3 6 ASN B 350 ALA B 396 TYR B 433 HIS B 441 SITE 2 AC3 6 GLY B 508 ILE B 509 CRYST1 80.009 80.009 116.421 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012499 0.007216 0.000000 0.00000 SCALE2 0.000000 0.014432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008590 0.00000 MASTER 374 0 13 16 20 0 5 6 0 0 0 38 END