HEADER TRANSFERASE 08-JUN-10 3NE9 TITLE CHRONOBACTERIUM AMMOINIAGENES APO-ACPS STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE PROTEIN TRANSFERASE, PPT1P; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM AMMONIAGENES; SOURCE 3 ORGANISM_COMMON: BREVIBACTERIUM AMMONIAGENES; SOURCE 4 ORGANISM_TAXID: 1697; SOURCE 5 GENE: ACPS, PPT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS ACYL CARRIER PROTEIN SYNTHASE, ACYL CARRIER PROTEIN, FATTY ACID KEYWDS 2 SYNTHASE, ACPS, MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS KEYWDS 3 PROJECT, TRANSFERASE, XMTB, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR K.GOKULAN,MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS PROJECT AUTHOR 2 (XMTB) REVDAT 3 09-SEP-20 3NE9 1 TITLE REMARK LINK REVDAT 2 25-JUL-12 3NE9 1 JRNL TITLE VERSN REVDAT 1 25-AUG-10 3NE9 0 JRNL AUTH K.GOKULAN,A.AGGARWAL,L.SHIPMAN,G.S.BESRA,J.C.SACCHETTINI JRNL TITL MYCOBACTERIUM TUBERCULOSIS ACYL CARRIER PROTEIN SYNTHASE JRNL TITL 2 ADOPTS TWO DIFFERENT PH-DEPENDENT STRUCTURAL CONFORMATIONS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 657 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 21697604 JRNL DOI 10.1107/S0907444911020221 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 15717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1118 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.607 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.148 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3304 ; 0.031 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3055 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4472 ; 2.570 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7063 ; 1.274 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 8.349 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 489 ; 0.231 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3689 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 700 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 692 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3664 ; 0.261 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2153 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 78 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.327 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2043 ; 1.449 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3263 ; 2.641 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1261 ; 3.647 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 6.074 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792, 0.97906, 0.96380 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16681 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.9 REMARK 200 DATA REDUNDANCY IN SHELL : 0.76 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES BUFFER PH 6.5, 0.2 M REMARK 280 AMMONIUM SULFATE, 30% PEG MME 5K, EVAPORATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.69950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.78050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.50100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.78050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.69950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.50100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 SER A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 ASP A 52 REMARK 465 ALA A 53 REMARK 465 THR A 54 REMARK 465 ASN A 55 REMARK 465 SER A 56 REMARK 465 SER A 57 REMARK 465 LEU A 58 REMARK 465 MSE B 1 REMARK 465 LEU B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 ALA B 49 REMARK 465 ALA B 50 REMARK 465 ALA B 51 REMARK 465 ASP B 52 REMARK 465 ALA B 53 REMARK 465 THR B 54 REMARK 465 ASN B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 LEU B 58 REMARK 465 ALA B 59 REMARK 465 MSE C 1 REMARK 465 LEU C 2 REMARK 465 ASP C 3 REMARK 465 ASN C 4 REMARK 465 ARG C 46 REMARK 465 ARG C 47 REMARK 465 SER C 48 REMARK 465 ALA C 49 REMARK 465 ALA C 50 REMARK 465 ALA C 51 REMARK 465 ASP C 52 REMARK 465 ALA C 53 REMARK 465 THR C 54 REMARK 465 ASN C 55 REMARK 465 SER C 56 REMARK 465 SER C 57 REMARK 465 LEU C 58 REMARK 465 ALA C 59 REMARK 465 GLY C 60 REMARK 465 SER C 61 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 78 O3 SO4 B 233 1.97 REMARK 500 CG1 VAL A 12 CD2 LEU A 146 2.12 REMARK 500 ND1 HIS C 42 OG1 THR C 45 2.14 REMARK 500 CD1 LEU A 146 CG1 VAL B 12 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 29 CB SER A 29 OG -0.084 REMARK 500 GLU A 32 CG GLU A 32 CD 0.092 REMARK 500 GLU B 22 CD GLU B 22 OE1 0.077 REMARK 500 GLU B 74 CD GLU B 74 OE2 0.074 REMARK 500 ARG B 153 C ARG B 153 OXT 0.130 REMARK 500 GLU C 32 CG GLU C 32 CD 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 13 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 41 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 62 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP B 94 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 110 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 110 CB - CG - CD ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG B 110 CG - CD - NE ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 139 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 LYS C 73 CD - CE - NZ ANGL. DEV. = -18.2 DEGREES REMARK 500 PRO C 93 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO C 93 C - N - CD ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG C 110 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG C 110 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 110 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP C 139 CB - CG - OD2 ANGL. DEV. = 8.7 DEGREES REMARK 500 LEU C 146 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG C 153 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 46 -37.07 -155.81 REMARK 500 ARG B 46 -47.54 -170.65 REMARK 500 SER B 61 -35.68 -160.17 REMARK 500 ILE B 101 77.82 -105.75 REMARK 500 PHE C 31 -25.75 -38.08 REMARK 500 ASP C 139 149.87 -172.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 46 ARG B 47 -132.71 REMARK 500 ARG B 47 SER B 48 142.68 REMARK 500 ALA C 43 GLN C 44 146.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 234 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NE1 RELATED DB: PDB REMARK 900 RELATED ID: 3NE3 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHORS THE DISCREPANCIES MAY BE DUE TO ERRORS AT REMARK 999 THE GENOMIC SEQUENCING DBREF 3NE9 A 1 153 UNP O31302 O31302_CORAM 1 153 DBREF 3NE9 B 1 153 UNP O31302 O31302_CORAM 1 153 DBREF 3NE9 C 1 153 UNP O31302 O31302_CORAM 1 153 SEQADV 3NE9 SER A 48 UNP O31302 ASP 48 SEE REMARK 999 SEQADV 3NE9 LEU A 146 UNP O31302 GLN 146 SEE REMARK 999 SEQADV 3NE9 SER B 48 UNP O31302 ASP 48 SEE REMARK 999 SEQADV 3NE9 LEU B 146 UNP O31302 GLN 146 SEE REMARK 999 SEQADV 3NE9 SER C 48 UNP O31302 ASP 48 SEE REMARK 999 SEQADV 3NE9 LEU C 146 UNP O31302 GLN 146 SEE REMARK 999 SEQRES 1 A 153 MSE LEU ASP ASN ARG GLU ALA MSE THR VAL GLY VAL ASP SEQRES 2 A 153 LEU VAL HIS ILE PRO GLY PHE ALA GLU GLN LEU SER ARG SEQRES 3 A 153 PRO GLY SER THR PHE GLU GLN VAL PHE SER PRO LEU GLU SEQRES 4 A 153 ARG ARG HIS ALA GLN THR ARG ARG SER ALA ALA ALA ASP SEQRES 5 A 153 ALA THR ASN SER SER LEU ALA GLY SER ARG THR GLU HIS SEQRES 6 A 153 LEU ALA GLY ARG TRP ALA ALA LYS GLU ALA PHE ILE LYS SEQRES 7 A 153 ALA TRP SER GLN ALA ILE TYR GLY LYS PRO PRO VAL ILE SEQRES 8 A 153 GLU PRO ASP LEU VAL ASN PHE ALA GLU ILE GLU VAL LEU SEQRES 9 A 153 PRO ASP ARG TRP GLY ARG VAL ALA LEU GLN LEU LYS GLY SEQRES 10 A 153 GLU VAL ALA ALA LYS LEU GLN GLU SER ILE GLY ASP VAL SEQRES 11 A 153 GLU LEU ALA LEU SER ILE SER HIS ASP GLY ASP TYR ALA SEQRES 12 A 153 THR ALA LEU CYS LEU LEU ARG TYR GLN ARG SEQRES 1 B 153 MSE LEU ASP ASN ARG GLU ALA MSE THR VAL GLY VAL ASP SEQRES 2 B 153 LEU VAL HIS ILE PRO GLY PHE ALA GLU GLN LEU SER ARG SEQRES 3 B 153 PRO GLY SER THR PHE GLU GLN VAL PHE SER PRO LEU GLU SEQRES 4 B 153 ARG ARG HIS ALA GLN THR ARG ARG SER ALA ALA ALA ASP SEQRES 5 B 153 ALA THR ASN SER SER LEU ALA GLY SER ARG THR GLU HIS SEQRES 6 B 153 LEU ALA GLY ARG TRP ALA ALA LYS GLU ALA PHE ILE LYS SEQRES 7 B 153 ALA TRP SER GLN ALA ILE TYR GLY LYS PRO PRO VAL ILE SEQRES 8 B 153 GLU PRO ASP LEU VAL ASN PHE ALA GLU ILE GLU VAL LEU SEQRES 9 B 153 PRO ASP ARG TRP GLY ARG VAL ALA LEU GLN LEU LYS GLY SEQRES 10 B 153 GLU VAL ALA ALA LYS LEU GLN GLU SER ILE GLY ASP VAL SEQRES 11 B 153 GLU LEU ALA LEU SER ILE SER HIS ASP GLY ASP TYR ALA SEQRES 12 B 153 THR ALA LEU CYS LEU LEU ARG TYR GLN ARG SEQRES 1 C 153 MSE LEU ASP ASN ARG GLU ALA MSE THR VAL GLY VAL ASP SEQRES 2 C 153 LEU VAL HIS ILE PRO GLY PHE ALA GLU GLN LEU SER ARG SEQRES 3 C 153 PRO GLY SER THR PHE GLU GLN VAL PHE SER PRO LEU GLU SEQRES 4 C 153 ARG ARG HIS ALA GLN THR ARG ARG SER ALA ALA ALA ASP SEQRES 5 C 153 ALA THR ASN SER SER LEU ALA GLY SER ARG THR GLU HIS SEQRES 6 C 153 LEU ALA GLY ARG TRP ALA ALA LYS GLU ALA PHE ILE LYS SEQRES 7 C 153 ALA TRP SER GLN ALA ILE TYR GLY LYS PRO PRO VAL ILE SEQRES 8 C 153 GLU PRO ASP LEU VAL ASN PHE ALA GLU ILE GLU VAL LEU SEQRES 9 C 153 PRO ASP ARG TRP GLY ARG VAL ALA LEU GLN LEU LYS GLY SEQRES 10 C 153 GLU VAL ALA ALA LYS LEU GLN GLU SER ILE GLY ASP VAL SEQRES 11 C 153 GLU LEU ALA LEU SER ILE SER HIS ASP GLY ASP TYR ALA SEQRES 12 C 153 THR ALA LEU CYS LEU LEU ARG TYR GLN ARG MODRES 3NE9 MSE A 8 MET SELENOMETHIONINE MODRES 3NE9 MSE B 8 MET SELENOMETHIONINE MODRES 3NE9 MSE C 8 MET SELENOMETHIONINE HET MSE A 8 8 HET MSE B 8 8 HET MSE C 8 8 HET SO4 A 231 5 HET SO4 A 232 5 HET SO4 B 233 5 HET SO4 B 234 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *73(H2 O) HELIX 1 1 ILE A 17 ARG A 26 1 10 HELIX 2 2 SER A 29 GLN A 33 5 5 HELIX 3 3 SER A 36 GLN A 44 1 9 HELIX 4 4 GLY A 60 ILE A 84 1 25 HELIX 5 5 GLU A 92 VAL A 96 5 5 HELIX 6 6 ASN A 97 ALA A 99 5 3 HELIX 7 7 LYS A 116 ILE A 127 1 12 HELIX 8 8 ILE B 17 ARG B 26 1 10 HELIX 9 9 SER B 36 ALA B 43 1 8 HELIX 10 10 SER B 61 ALA B 83 1 23 HELIX 11 11 GLU B 92 VAL B 96 5 5 HELIX 12 12 ASN B 97 ALA B 99 5 3 HELIX 13 13 LYS B 116 GLY B 128 1 13 HELIX 14 14 ILE C 17 ARG C 26 1 10 HELIX 15 15 THR C 30 PHE C 35 5 6 HELIX 16 16 SER C 36 HIS C 42 1 7 HELIX 17 17 ARG C 62 ILE C 84 1 23 HELIX 18 18 GLU C 92 VAL C 96 5 5 HELIX 19 19 ASN C 97 ALA C 99 5 3 HELIX 20 20 LYS C 116 ILE C 127 1 12 SHEET 1 A 3 GLU A 6 HIS A 16 0 SHEET 2 A 3 TYR A 142 GLN A 152 -1 O ALA A 143 N VAL A 15 SHEET 3 A 3 VAL A 130 ASP A 139 -1 N SER A 137 O THR A 144 SHEET 1 B 2 ILE A 101 PRO A 105 0 SHEET 2 B 2 VAL A 111 LEU A 115 -1 O ALA A 112 N LEU A 104 SHEET 1 C 3 GLU B 6 HIS B 16 0 SHEET 2 C 3 TYR B 142 GLN B 152 -1 O ALA B 143 N VAL B 15 SHEET 3 C 3 GLU B 131 ASP B 139 -1 N SER B 137 O THR B 144 SHEET 1 D 2 ILE B 101 PRO B 105 0 SHEET 2 D 2 VAL B 111 LEU B 115 -1 O ALA B 112 N LEU B 104 SHEET 1 E 3 GLU C 6 HIS C 16 0 SHEET 2 E 3 TYR C 142 GLN C 152 -1 O LEU C 149 N THR C 9 SHEET 3 E 3 VAL C 130 ASP C 139 -1 N SER C 137 O THR C 144 SHEET 1 F 2 ILE C 101 PRO C 105 0 SHEET 2 F 2 VAL C 111 LEU C 115 -1 O ALA C 112 N LEU C 104 LINK C ALA A 7 N MSE A 8 1555 1555 1.32 LINK C MSE A 8 N THR A 9 1555 1555 1.30 LINK C ALA B 7 N MSE B 8 1555 1555 1.32 LINK C MSE B 8 N THR B 9 1555 1555 1.30 LINK C ALA C 7 N MSE C 8 1555 1555 1.33 LINK C MSE C 8 N THR C 9 1555 1555 1.29 SITE 1 AC1 4 ASP A 13 LYS A 78 SER C 137 HIS C 138 SITE 1 AC2 3 ARG A 46 HIS A 65 HIS A 138 SITE 1 AC3 4 SER B 137 HIS B 138 ASP C 13 LYS C 78 SITE 1 AC4 3 ARG B 46 HIS B 65 HIS B 138 CRYST1 51.399 59.002 153.561 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006512 0.00000 MASTER 449 0 7 20 15 0 4 6 0 0 0 36 END