HEADER HYDROLASE 02-JUN-10 3NAM TITLE SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN TITLE 2 DERIVATIVE DOTG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERCA1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1 ISOFORM; COMPND 5 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: FAST TWITCH SKELETAL MUSCLE KEYWDS SERCA, P-TYPE ATPASE, CA2+-ATPASE, THAPSIGARGIN, PROSTATE CANCER, KEYWDS 2 CALCIUM TRANSPORT, ENDOPLASMIC RETICULUM, HYDROLASE, ION TRANSPORT, KEYWDS 3 SARCOPLASMIC RETICULUM, TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.M.L.WINTHER,Y.SONNTAG,C.OLESEN,J.V.MOLLER,P.NISSEN REVDAT 3 08-NOV-17 3NAM 1 REMARK REVDAT 2 22-SEP-10 3NAM 1 JRNL REVDAT 1 30-JUN-10 3NAM 0 JRNL AUTH A.M.L.WINTHER,H.LIU,Y.SONNTAG,C.OLESEN,M.LE MAIRE,H.SOEHOEL, JRNL AUTH 2 C.E.OLSEN,S.B.CHRISTENSEN,P.NISSEN,J.V.MOLLER JRNL TITL CRITICAL ROLES OF HYDROPHOBICITY AND ORIENTATION OF SIDE JRNL TITL 2 CHAINS FOR INACTIVATION OF SARCOPLASMIC RETICULUM JRNL TITL 3 CA2+-ATPASE WITH THAPSIGARGIN AND THAPSIGARGIN ANALOGS JRNL REF J.BIOL.CHEM. V. 285 28883 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20551329 JRNL DOI 10.1074/JBC.M110.136242 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 26087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 735 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3687 REMARK 3 BIN FREE R VALUE : 0.4361 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.48100 REMARK 3 B22 (A**2) : 6.48100 REMARK 3 B33 (A**2) : -12.96200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.383 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.470 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.875 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.095 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 68.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : TG1_PTY2.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2548 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26884 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16800 REMARK 200 FOR THE DATA SET : 11.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57900 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2C8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% W/V PEG 2000 MME, 4% V/V GLYCEROL, REMARK 280 0.05M NACL, 4% V/V 2-METHYL-2,4-PENTANEDIOL, PH 6.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 295.61350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.77250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.77250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.80675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.77250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.77250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 443.42025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.77250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.77250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 147.80675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.77250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.77250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 443.42025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 295.61350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 160.38 161.78 REMARK 500 ALA A 3 63.68 -65.34 REMARK 500 LYS A 7 -92.40 -72.94 REMARK 500 SER A 8 -120.44 -174.21 REMARK 500 PRO A 42 162.06 -36.26 REMARK 500 ALA A 43 -162.57 -60.25 REMARK 500 PHE A 57 40.85 -101.76 REMARK 500 ALA A 76 24.85 -66.81 REMARK 500 TRP A 77 -101.62 -126.18 REMARK 500 PHE A 78 -95.64 -52.81 REMARK 500 GLU A 79 98.19 -55.25 REMARK 500 GLU A 80 107.10 128.90 REMARK 500 GLU A 82 146.33 62.64 REMARK 500 GLU A 83 -9.93 92.06 REMARK 500 PHE A 88 -20.76 94.74 REMARK 500 LYS A 120 -25.72 -37.16 REMARK 500 TYR A 122 27.80 -69.38 REMARK 500 ALA A 132 42.16 -83.10 REMARK 500 ASP A 133 -1.43 -144.36 REMARK 500 THR A 181 -19.10 -141.09 REMARK 500 ALA A 224 -71.07 -77.74 REMARK 500 ASP A 245 -126.40 -63.10 REMARK 500 LYS A 246 129.43 -170.12 REMARK 500 THR A 247 129.50 -34.81 REMARK 500 LEU A 260 3.85 -60.19 REMARK 500 SER A 287 1.73 83.69 REMARK 500 ARG A 334 -74.12 -82.65 REMARK 500 PRO A 337 -16.10 -49.53 REMARK 500 THR A 341 43.22 -68.60 REMARK 500 LEU A 342 -45.95 -133.94 REMARK 500 LYS A 352 -83.00 -82.20 REMARK 500 THR A 353 -68.43 -22.01 REMARK 500 SER A 362 134.52 -174.23 REMARK 500 PHE A 367 133.11 -173.00 REMARK 500 LYS A 397 -82.58 -69.60 REMARK 500 ASN A 398 64.96 -100.65 REMARK 500 ASP A 399 -26.70 76.10 REMARK 500 PRO A 401 155.05 -48.93 REMARK 500 GLN A 406 -5.87 -52.96 REMARK 500 ASN A 421 115.66 -178.42 REMARK 500 VAL A 437 -72.64 -90.80 REMARK 500 ASN A 453 90.73 -38.84 REMARK 500 VAL A 459 -24.56 -147.47 REMARK 500 ASN A 461 33.09 -92.07 REMARK 500 SER A 463 -174.21 -69.59 REMARK 500 ARG A 467 -27.34 -38.04 REMARK 500 GLU A 482 -81.19 -65.91 REMARK 500 PRO A 500 -174.14 -68.74 REMARK 500 LYS A 502 -169.21 80.36 REMARK 500 ARG A 505 22.78 -141.74 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTY A 998 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 996 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1000 O REMARK 620 2 ASP A 703 OD1 75.9 REMARK 620 3 ASP A 707 OD2 75.4 61.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 995 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 732 OE2 REMARK 620 2 ALA A 714 O 121.3 REMARK 620 3 LYS A 712 O 149.8 76.0 REMARK 620 4 LEU A 711 O 125.3 81.0 79.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 995 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OTK A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 998 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BY4 RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN REMARK 900 DERIVATIVE BOC-12ADT. REMARK 900 RELATED ID: 2C8K RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THAPSIGARGIN. REMARK 900 RELATED ID: 3NAL RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN REMARK 900 DERIVATIVE DTB REMARK 900 RELATED ID: 3NAN RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH A THAPSIGARGIN REMARK 900 DERIVATIVE BOC-(PHI)TG DBREF 3NAM A 1 994 UNP B6CAM1 B6CAM1_RABIT 1 994 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY HET NA A 995 1 HET MG A 996 1 HET OTK A 997 36 HET PTY A 998 24 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM OTK (3S,3AR,4S,6S,6AS,8R,9R,9AR,9BS)-6-(ACETYLOXY)-4- HETNAM 2 OTK (BUTANOYLOXY)-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-2- HETNAM 3 OTK OXODODECAHYDROAZULENO[4,5-B]FURAN-8-YL (2Z)-2- HETNAM 4 OTK METHYLBUT-2-ENOATE HETNAM PTY PHOSPHATIDYLETHANOLAMINE FORMUL 2 NA NA 1+ FORMUL 3 MG MG 2+ FORMUL 4 OTK C26 H38 O10 FORMUL 5 PTY C40 H80 N O8 P FORMUL 6 HOH *3(H2 O) HELIX 1 1 GLU A 10 GLY A 17 1 8 HELIX 2 2 THR A 25 GLY A 37 1 13 HELIX 3 3 SER A 48 PHE A 57 1 10 HELIX 4 4 ASP A 59 ALA A 76 1 18 HELIX 5 5 PHE A 88 ASN A 111 1 24 HELIX 6 6 ASN A 114 LYS A 120 1 7 HELIX 7 7 GLU A 121 GLU A 123 5 3 HELIX 8 8 ARG A 143 ILE A 145 5 3 HELIX 9 9 GLN A 177 GLY A 182 1 6 HELIX 10 10 VAL A 200 LYS A 204 5 5 HELIX 11 11 THR A 226 THR A 230 5 5 HELIX 12 12 ILE A 232 THR A 242 1 11 HELIX 13 13 THR A 247 ASN A 275 1 29 HELIX 14 14 ILE A 276 ASP A 281 5 6 HELIX 15 15 SER A 287 ILE A 307 1 21 HELIX 16 16 GLY A 310 ALA A 327 1 18 HELIX 17 17 SER A 335 GLY A 343 5 9 HELIX 18 18 ARG A 403 PHE A 407 5 5 HELIX 19 19 ASP A 408 CYS A 420 1 13 HELIX 20 20 GLU A 439 LYS A 451 1 13 HELIX 21 21 SER A 463 ALA A 468 1 6 HELIX 22 22 ASN A 469 GLN A 477 1 9 HELIX 23 23 LYS A 502 ALA A 506 5 5 HELIX 24 24 ALA A 517 ARG A 524 1 8 HELIX 25 25 THR A 538 GLY A 555 1 18 HELIX 26 26 LYS A 572 MET A 576 5 5 HELIX 27 27 ARG A 583 GLU A 588 1 6 HELIX 28 28 ARG A 604 ALA A 617 1 14 HELIX 29 29 ASN A 628 GLY A 640 1 13 HELIX 30 30 THR A 654 ASP A 660 1 7 HELIX 31 31 PRO A 662 CYS A 670 1 9 HELIX 32 32 GLU A 680 TYR A 694 1 15 HELIX 33 33 GLY A 704 ASN A 706 5 3 HELIX 34 34 ASP A 707 ALA A 714 1 8 HELIX 35 35 THR A 724 SER A 731 1 8 HELIX 36 36 ASN A 739 GLY A 782 1 44 HELIX 37 37 ILE A 788 VAL A 798 1 11 HELIX 38 38 ASP A 800 GLY A 808 1 9 HELIX 39 39 ASP A 815 ARG A 819 5 5 HELIX 40 40 SER A 830 MET A 857 1 28 HELIX 41 41 GLU A 889 GLU A 892 5 4 HELIX 42 42 ALA A 893 ASN A 914 1 22 HELIX 43 43 PRO A 926 VAL A 929 5 4 HELIX 44 44 ASN A 930 VAL A 950 1 21 HELIX 45 45 ASP A 951 PHE A 957 1 7 HELIX 46 46 ASP A 963 LEU A 975 1 13 HELIX 47 47 PRO A 976 ASN A 990 1 15 SHEET 1 A 6 GLN A 138 LYS A 141 0 SHEET 2 A 6 MET A 126 TYR A 130 -1 N GLY A 127 O ILE A 140 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O ILE A 150 N TYR A 130 SHEET 4 A 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 A 6 ASP A 162 SER A 167 -1 N ARG A 164 O ILE A 222 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 VAL A 187 ILE A 188 0 SHEET 2 B 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ALA A 216 N ARG A 174 SHEET 1 C 7 ALA A 331 VAL A 333 0 SHEET 2 C 7 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 C 7 ILE A 716 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 4 C 7 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 C 7 VAL A 347 ASP A 351 1 N CYS A 349 O ALA A 699 SHEET 6 C 7 ARG A 620 ILE A 624 1 O ARG A 620 N ILE A 348 SHEET 7 C 7 CYS A 675 PHE A 676 1 O PHE A 676 N MET A 623 SHEET 1 D 8 VAL A 395 LEU A 396 0 SHEET 2 D 8 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 3 D 8 VAL A 363 ASP A 373 -1 N ASP A 370 O SER A 378 SHEET 4 D 8 LEU A 591 MET A 599 -1 O GLY A 598 N LYS A 365 SHEET 5 D 8 ARG A 560 ARG A 567 -1 N LEU A 564 O GLY A 595 SHEET 6 D 8 LYS A 511 GLY A 516 -1 N GLY A 516 O ALA A 563 SHEET 7 D 8 SER A 493 PRO A 500 -1 N CYS A 498 O LYS A 511 SHEET 8 D 8 MET A 479 SER A 488 -1 N LYS A 480 O SER A 499 SHEET 1 E 6 VAL A 395 LEU A 396 0 SHEET 2 E 6 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 3 E 6 VAL A 363 ASP A 373 -1 N ASP A 370 O SER A 378 SHEET 4 E 6 LEU A 591 MET A 599 -1 O GLY A 598 N LYS A 365 SHEET 5 E 6 CYS A 525 VAL A 528 1 N TYR A 527 O PHE A 593 SHEET 6 E 6 VAL A 535 PRO A 536 -1 O VAL A 535 N VAL A 528 LINK MG MG A 996 O HOH A1000 1555 1555 2.54 LINK OD1 ASP A 703 MG MG A 996 1555 1555 2.61 LINK OE2 GLU A 732 NA NA A 995 1555 1555 2.64 LINK O ALA A 714 NA NA A 995 1555 1555 2.72 LINK O LYS A 712 NA NA A 995 1555 1555 2.80 LINK O LEU A 711 NA NA A 995 1555 1555 2.80 LINK OD2 ASP A 707 MG MG A 996 1555 1555 2.81 SITE 1 AC1 5 GLN A 244 LEU A 711 LYS A 712 ALA A 714 SITE 2 AC1 5 GLU A 732 SITE 1 AC2 3 ASP A 703 ASP A 707 HOH A1000 SITE 1 AC3 10 GLU A 255 PHE A 256 GLN A 259 LEU A 260 SITE 2 AC3 10 VAL A 263 VAL A 769 VAL A 772 ILE A 829 SITE 3 AC3 10 PHE A 834 TYR A 837 SITE 1 AC4 6 ASN A 101 VAL A 104 GLY A 105 PRO A 312 SITE 2 AC4 6 ALA A 313 THR A 316 CRYST1 71.545 71.545 591.227 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001691 0.00000 MASTER 366 0 4 47 30 0 8 6 0 0 0 77 END