HEADER LYASE/LYASE INHIBITOR 31-MAY-10 3N9S TITLE CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE FROM HELICOBACTER PYLORI TITLE 2 IN COMPLEX WITH N-(4-HYDROXYBUTYL)- GLYCOLOHYDROXAMIC ACID BIS- TITLE 3 PHOSPHATE, A COMPETITIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 290847; SOURCE 4 STRAIN: 51; SOURCE 5 GENE: ALF_HELPY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK233-3 KEYWDS FBP ALDOLASE, CLASS II, INHIBITOR, LYASE, LYASE-LYASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.COINCON,S.SYGUSCH REVDAT 2 08-DEC-10 3N9S 1 HEADER REVDAT 1 17-NOV-10 3N9S 0 JRNL AUTH R.DAHER,M.FONVIELLE,P.M.GEST,M.E.GUERIN,M.JACKSON,J.SYGUSCH, JRNL AUTH 2 M.THERISOD JRNL TITL RATIONAL DESIGN, SYNTHESIS, AND EVALUATION OF NEW SELECTIVE JRNL TITL 2 INHIBITORS OF MICROBIAL CLASS II (ZINC DEPENDENT) FRUCTOSE JRNL TITL 3 BIS-PHOSPHATE ALDOLASES. JRNL REF J.MED.CHEM. V. 53 7836 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20929256 JRNL DOI 10.1021/JM1009814 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_378) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 47476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.480 REMARK 3 FREE R VALUE TEST SET COUNT : 3553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2850 - 5.4010 0.98 2057 168 0.1990 0.1970 REMARK 3 2 5.4010 - 4.2900 0.98 1949 159 0.1360 0.1780 REMARK 3 3 4.2900 - 3.7490 0.98 1926 155 0.1240 0.1760 REMARK 3 4 3.7490 - 3.4070 0.98 1904 156 0.1350 0.1680 REMARK 3 5 3.4070 - 3.1630 0.98 1894 155 0.1470 0.2060 REMARK 3 6 3.1630 - 2.9760 0.96 1851 151 0.1560 0.2060 REMARK 3 7 2.9760 - 2.8270 0.95 1826 146 0.1590 0.1880 REMARK 3 8 2.8270 - 2.7040 0.95 1817 148 0.1550 0.2420 REMARK 3 9 2.7040 - 2.6000 0.94 1804 148 0.1590 0.2130 REMARK 3 10 2.6000 - 2.5110 0.94 1796 143 0.1700 0.2290 REMARK 3 11 2.5110 - 2.4320 0.93 1767 146 0.1600 0.2250 REMARK 3 12 2.4320 - 2.3630 0.93 1810 145 0.1570 0.2170 REMARK 3 13 2.3630 - 2.3000 0.93 1766 141 0.1600 0.2240 REMARK 3 14 2.3000 - 2.2440 0.93 1766 143 0.1650 0.2650 REMARK 3 15 2.2440 - 2.1930 0.93 1752 142 0.1690 0.2440 REMARK 3 16 2.1930 - 2.1470 0.93 1777 141 0.1810 0.2370 REMARK 3 17 2.1470 - 2.1040 0.93 1781 146 0.1920 0.2390 REMARK 3 18 2.1040 - 2.0640 0.92 1734 138 0.1990 0.2400 REMARK 3 19 2.0640 - 2.0270 0.91 1707 139 0.2010 0.2710 REMARK 3 20 2.0270 - 1.9930 0.89 1695 132 0.2070 0.2550 REMARK 3 21 1.9930 - 1.9610 0.86 1615 127 0.2140 0.2800 REMARK 3 22 1.9610 - 1.9310 0.83 1602 131 0.2240 0.2770 REMARK 3 23 1.9310 - 1.9020 0.79 1471 126 0.2330 0.2930 REMARK 3 24 1.9020 - 1.8750 0.76 1427 107 0.2370 0.2830 REMARK 3 25 1.8750 - 1.8500 0.75 1429 120 0.2480 0.2750 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.53 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 53.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.28100 REMARK 3 B22 (A**2) : 9.64400 REMARK 3 B33 (A**2) : -2.36300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4769 REMARK 3 ANGLE : 0.960 6413 REMARK 3 CHIRALITY : 0.057 710 REMARK 3 PLANARITY : 0.005 831 REMARK 3 DIHEDRAL : 15.836 1799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N9S COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 71.671 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16100 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : 1.28400 REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENRY 3C52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 1000, 12% PEG 8000, 0.2 M REMARK 280 CALCIUM ACETATE,50 MM TRIS/HOAC, PH 8.5, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.47950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.99250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.71800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.99250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.47950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.71800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ILE B 145 REMARK 465 SER B 146 REMARK 465 VAL B 147 REMARK 465 ASP B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 ASP B 151 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 144 11.90 82.92 REMARK 500 VAL A 153 -55.43 -120.02 REMARK 500 PHE A 183 67.24 -118.74 REMARK 500 ASP A 255 -55.86 -139.96 REMARK 500 PHE B 183 69.11 -119.90 REMARK 500 ILE B 215 72.91 39.04 REMARK 500 ASP B 255 -61.82 -144.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 555 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B 629 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH A 588 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 599 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 712 DISTANCE = 8.75 ANGSTROMS REMARK 525 HOH B 770 DISTANCE = 5.56 ANGSTROMS REMARK 525 HOH B 774 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 805 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B 855 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B 949 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH B 964 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH B 969 DISTANCE = 9.49 ANGSTROMS REMARK 525 HOH B 970 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B 973 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH B 981 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 839 DISTANCE = 5.44 ANGSTROMS REMARK 525 HOH A 841 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 868 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A 894 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 900 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 908 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH A 909 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH A 922 DISTANCE = 8.89 ANGSTROMS REMARK 525 HOH A 930 DISTANCE = 13.40 ANGSTROMS REMARK 525 HOH A 937 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH A 938 DISTANCE = 8.10 ANGSTROMS REMARK 525 HOH A 952 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH A 975 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A 977 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH A 987 DISTANCE = 6.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 309 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TD4 A 308 O01 REMARK 620 2 HIS A 180 NE2 122.4 REMARK 620 3 HIS A 210 ND1 106.9 127.2 REMARK 620 4 HIS A 83 NE2 96.6 99.5 92.2 REMARK 620 5 TD4 A 308 O13 75.1 81.5 94.7 170.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 180 NE2 REMARK 620 2 TD4 B 311 O01 120.8 REMARK 620 3 HIS B 210 ND1 131.8 100.9 REMARK 620 4 HIS B 83 NE2 104.5 92.6 96.0 REMARK 620 5 TD4 B 311 O13 77.8 73.6 93.4 164.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 134 OE1 REMARK 620 2 HOH B 349 O 156.9 REMARK 620 3 ASP B 104 OD2 84.4 87.0 REMARK 620 4 ASP B 104 OD1 76.0 82.2 49.9 REMARK 620 5 SER B 106 OG 88.6 80.6 130.0 80.4 REMARK 620 6 HOH B 436 O 94.4 106.4 86.7 135.9 143.2 REMARK 620 7 HOH B 351 O 122.1 76.9 140.8 154.9 82.7 64.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 104 OD2 REMARK 620 2 HOH A 320 O 85.6 REMARK 620 3 SER A 106 OG 127.4 86.1 REMARK 620 4 GLU A 134 OE1 77.2 157.8 93.3 REMARK 620 5 ASP A 104 OD1 50.4 86.8 77.3 71.4 REMARK 620 6 HOH A 449 O 83.6 93.3 148.7 98.5 133.9 REMARK 620 7 HOH A 638 O 155.9 113.8 70.6 86.7 139.8 81.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 GLU A 132 OE2 139.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 82 OD1 REMARK 620 2 GLU B 132 OE2 141.4 REMARK 620 3 GLU B 132 OE1 171.5 41.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TD4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TD4 B 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C4U RELATED DB: PDB REMARK 900 RELATED ID: 3C52 RELATED DB: PDB REMARK 900 RELATED ID: 3C56 RELATED DB: PDB REMARK 900 RELATED ID: 3N9R RELATED DB: PDB DBREF 3N9S A 1 307 UNP D0IR47 D0IR47_HELP1 1 307 DBREF 3N9S B 1 307 UNP D0IR47 D0IR47_HELP1 1 307 SEQADV 3N9S ASN A 218 UNP D0IR47 ASP 218 CONFLICT SEQADV 3N9S ASN B 218 UNP D0IR47 ASP 218 CONFLICT SEQRES 1 A 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 A 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 A 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 A 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 A 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 A 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 A 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 A 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 A 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 A 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 A 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 A 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 A 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 A 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 A 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 A 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 A 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 A 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 A 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 A 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 A 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 A 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 A 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 A 307 LEU LEU GLY SER ALA ASN LYS ILE SEQRES 1 B 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 B 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 B 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 B 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 B 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 B 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 B 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 B 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 B 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 B 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 B 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 B 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 B 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 B 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 B 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 B 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 B 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 B 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 B 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 B 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 B 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 B 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 B 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 B 307 LEU LEU GLY SER ALA ASN LYS ILE HET TD4 A 308 19 HET ZN A 309 1 HET CA A 310 1 HET NA A 311 1 HET ZN B 308 1 HET CA B 309 1 HET NA B 310 1 HET TD4 B 311 19 HETNAM TD4 4-{HYDROXY[(PHOSPHONOOXY)ACETYL]AMINO}BUTYL DIHYDROGEN HETNAM 2 TD4 PHOSPHATE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 3 TD4 2(C6 H15 N O10 P2) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CA 2(CA 2+) FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *990(H2 O) HELIX 1 1 LYS A 4 GLY A 16 1 13 HELIX 2 2 ASN A 26 ASN A 41 1 16 HELIX 3 3 GLU A 50 GLY A 57 1 8 HELIX 4 4 GLY A 57 TYR A 72 1 16 HELIX 5 5 THR A 86 GLY A 97 1 12 HELIX 6 6 ALA A 109 ALA A 127 1 19 HELIX 7 7 ASN A 156 GLN A 168 1 13 HELIX 8 8 ASP A 192 ASN A 204 1 13 HELIX 9 9 PRO A 216 ALA A 226 1 11 HELIX 10 10 PRO A 237 GLY A 248 1 12 HELIX 11 11 ASP A 255 ASP A 273 1 19 HELIX 12 12 ASP A 278 LEU A 301 1 24 HELIX 13 13 LYS B 4 GLY B 16 1 13 HELIX 14 14 ASN B 26 ASN B 41 1 16 HELIX 15 15 GLU B 50 GLY B 57 1 8 HELIX 16 16 GLY B 57 TYR B 72 1 16 HELIX 17 17 THR B 86 GLY B 97 1 12 HELIX 18 18 ALA B 109 ALA B 127 1 19 HELIX 19 19 ASN B 156 GLN B 168 1 13 HELIX 20 20 ASP B 192 ASN B 204 1 13 HELIX 21 21 PRO B 216 ALA B 226 1 11 HELIX 22 22 PRO B 237 GLY B 248 1 12 HELIX 23 23 ASP B 255 ASP B 273 1 19 HELIX 24 24 ASP B 278 LEU B 301 1 24 SHEET 1 A 9 VAL A 19 ASN A 23 0 SHEET 2 A 9 LEU A 44 SER A 49 1 O GLN A 47 N PHE A 22 SHEET 3 A 9 VAL A 77 GLY A 84 1 O ALA A 78 N ILE A 46 SHEET 4 A 9 SER A 100 ILE A 103 1 O SER A 100 N LEU A 81 SHEET 5 A 9 SER A 130 LEU A 135 1 O GLU A 132 N ILE A 103 SHEET 6 A 9 TYR A 171 PRO A 174 1 O ALA A 173 N ALA A 133 SHEET 7 A 9 LEU A 207 LEU A 209 1 O VAL A 208 N LEU A 172 SHEET 8 A 9 ILE A 249 THR A 254 1 O ASN A 250 N LEU A 207 SHEET 9 A 9 VAL A 19 ASN A 23 1 N ALA A 21 O THR A 254 SHEET 1 B 9 VAL B 19 ASN B 23 0 SHEET 2 B 9 LEU B 44 SER B 49 1 O GLN B 47 N PHE B 22 SHEET 3 B 9 VAL B 77 GLY B 84 1 O HIS B 80 N ILE B 46 SHEET 4 B 9 SER B 100 ILE B 103 1 O MET B 102 N LEU B 81 SHEET 5 B 9 SER B 130 LEU B 135 1 O GLU B 132 N ILE B 103 SHEET 6 B 9 TYR B 171 PRO B 174 1 O ALA B 173 N ALA B 133 SHEET 7 B 9 LEU B 207 LEU B 209 1 O VAL B 208 N LEU B 172 SHEET 8 B 9 ILE B 249 THR B 254 1 O ASN B 250 N LEU B 207 SHEET 9 B 9 VAL B 19 ASN B 23 1 N ALA B 21 O THR B 254 LINK O01 TD4 A 308 ZN ZN A 309 1555 1555 1.92 LINK NE2 HIS B 180 ZN ZN B 308 1555 1555 1.98 LINK ZN ZN B 308 O01 TD4 B 311 1555 1555 2.04 LINK NE2 HIS A 180 ZN ZN A 309 1555 1555 2.08 LINK ND1 HIS A 210 ZN ZN A 309 1555 1555 2.09 LINK ND1 HIS B 210 ZN ZN B 308 1555 1555 2.10 LINK NE2 HIS B 83 ZN ZN B 308 1555 1555 2.13 LINK NE2 HIS A 83 ZN ZN A 309 1555 1555 2.14 LINK OE1 GLU B 134 CA CA B 309 1555 1555 2.46 LINK OD2 ASP A 104 CA CA A 310 1555 1555 2.50 LINK CA CA B 309 O HOH B 349 1555 1555 2.51 LINK O13 TD4 A 308 ZN ZN A 309 1555 1555 2.55 LINK OD2 ASP B 104 CA CA B 309 1555 1555 2.56 LINK CA CA A 310 O HOH A 320 1555 1555 2.56 LINK ZN ZN B 308 O13 TD4 B 311 1555 1555 2.58 LINK OG SER A 106 CA CA A 310 1555 1555 2.60 LINK OE1 GLU A 134 CA CA A 310 1555 1555 2.61 LINK OD1 ASP B 104 CA CA B 309 1555 1555 2.64 LINK OD1 ASP A 104 CA CA A 310 1555 1555 2.65 LINK CA CA A 310 O HOH A 449 1555 1555 2.66 LINK OG SER B 106 CA CA B 309 1555 1555 2.66 LINK CA CA A 310 O HOH A 638 1555 1555 2.73 LINK CA CA B 309 O HOH B 436 1555 1555 2.76 LINK CA CA B 309 O HOH B 351 1555 1555 2.79 LINK OD1 ASP A 82 NA NA A 311 1555 1555 2.80 LINK OD1 ASP B 82 NA NA B 310 1555 1555 2.84 LINK OE2 GLU A 132 NA NA A 311 1555 1555 3.05 LINK OE2 GLU B 132 NA NA B 310 1555 1555 3.07 LINK OE1 GLU B 132 NA NA B 310 1555 1555 3.16 SITE 1 AC1 24 ASN A 23 SER A 49 ASP A 82 HIS A 83 SITE 2 AC1 24 HIS A 180 GLY A 181 LYS A 184 HIS A 210 SITE 3 AC1 24 GLY A 211 ALA A 212 SER A 213 ASN A 253 SITE 4 AC1 24 ASP A 255 THR A 256 ZN A 309 HOH A 345 SITE 5 AC1 24 HOH A 399 HOH A 450 HOH A 464 HOH A 587 SITE 6 AC1 24 HOH A 611 HOH A 644 HOH A 849 ARG B 280 SITE 1 AC2 4 HIS A 83 HIS A 180 HIS A 210 TD4 A 308 SITE 1 AC3 6 ASP A 104 SER A 106 GLU A 134 HOH A 320 SITE 2 AC3 6 HOH A 449 HOH A 638 SITE 1 AC4 7 HIS A 80 ASP A 82 MET A 102 GLU A 132 SITE 2 AC4 7 HIS A 210 LYS A 251 ASN A 253 SITE 1 AC5 4 HIS B 83 HIS B 180 HIS B 210 TD4 B 311 SITE 1 AC6 6 ASP B 104 SER B 106 GLU B 134 HOH B 349 SITE 2 AC6 6 HOH B 351 HOH B 436 SITE 1 AC7 7 HIS B 80 ASP B 82 MET B 102 GLU B 132 SITE 2 AC7 7 HIS B 210 LYS B 251 ASN B 253 SITE 1 AC8 24 ARG A 280 ASN B 23 SER B 49 ASP B 82 SITE 2 AC8 24 HIS B 83 HIS B 180 GLY B 181 LYS B 184 SITE 3 AC8 24 HIS B 210 GLY B 211 ALA B 212 SER B 213 SITE 4 AC8 24 ASN B 253 ASP B 255 THR B 256 ZN B 308 SITE 5 AC8 24 HOH B 325 HOH B 347 HOH B 389 HOH B 416 SITE 6 AC8 24 HOH B 450 HOH B 513 HOH B 991 HOH B 992 CRYST1 50.959 83.436 139.985 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007144 0.00000 MASTER 409 0 8 24 18 0 22 6 0 0 0 48 END