HEADER HYDROLASE 28-MAY-10 3N8U TITLE CRYSTAL STRUCTURE OF AN IMELYSIN PEPTIDASE (BACOVA_03801) FROM TITLE 2 BACTEROIDES OVATUS AT 1.44 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMELYSIN PEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_03801; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 08-NOV-17 3N8U 1 REMARK REVDAT 2 10-AUG-11 3N8U 1 JRNL VERSN REVDAT 1 28-JUL-10 3N8U 0 JRNL AUTH Q.XU,N.D.RAWLINGS,C.L.FARR,H.J.CHIU,J.C.GRANT,L.JAROSZEWSKI, JRNL AUTH 2 H.E.KLOCK,M.W.KNUTH,M.D.MILLER,D.WEEKES,M.A.ELSLIGER, JRNL AUTH 3 A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURAL AND SEQUENCE ANALYSIS OF IMELYSIN-LIKE PROTEINS JRNL TITL 2 IMPLICATED IN BACTERIAL IRON UPTAKE. JRNL REF PLOS ONE V. 6 21875 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21799754 JRNL DOI 10.1371/JOURNAL.PONE.0021875 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 132168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 6661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.4800 - 1.4400 0.00 8915 460 0.2430 0.2700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.18500 REMARK 3 B22 (A**2) : -2.31700 REMARK 3 B33 (A**2) : -1.86800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.20600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5921 REMARK 3 ANGLE : 0.740 8132 REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL 891 REMARK 3 DIHEDRAL : NULL 2067 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -4.2030 6.9220 101.8008 REMARK 3 T TENSOR REMARK 3 T11: -0.0576 T22: -0.0686 REMARK 3 T33: 0.0161 T12: 0.0000 REMARK 3 T13: 0.0213 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.2239 L22: 0.5631 REMARK 3 L33: 0.3895 L12: -0.5049 REMARK 3 L13: -0.0659 L23: 0.1948 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: 0.0117 S13: 0.2631 REMARK 3 S21: -0.0427 S22: -0.0029 S23: -0.1316 REMARK 3 S31: -0.0528 S32: 0.0305 S33: -0.0586 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -17.9581 3.0935 70.3671 REMARK 3 T TENSOR REMARK 3 T11: -0.1730 T22: -0.0635 REMARK 3 T33: -0.1299 T12: 0.0750 REMARK 3 T13: 0.0835 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.7366 L22: 1.3319 REMARK 3 L33: 1.9985 L12: -1.4581 REMARK 3 L13: -2.2654 L23: 0.6920 REMARK 3 S TENSOR REMARK 3 S11: 0.1974 S12: 0.5194 S13: -0.1841 REMARK 3 S21: -0.2853 S22: -0.4056 S23: -0.1290 REMARK 3 S31: -0.0498 S32: -0.1605 S33: 0.2081 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. MAGNESIUM (MG), CHLORIDE (CL), ETHYLENE GLYCOL REMARK 3 (EDO) MODELED ARE PRESENT CRYSTALLIZATION/PURIFICATION/CRYO REMARK 3 BUFFERS. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5. RAMACHANDRAN OUTLIER IS LOCATION IN A REGION WITH POOR REMARK 3 DENSITY. REMARK 4 REMARK 4 3N8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97947,0.97901 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132203 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 29.738 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M MGACETATE, 20.00% PEG-3350, NO REMARK 280 BUFFER PH 7.7, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.73500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.73500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 25 REMARK 465 ASP A 26 REMARK 465 ASP A 27 REMARK 465 ASP A 28 REMARK 465 ASN A 29 REMARK 465 PRO A 30 REMARK 465 THR A 31 REMARK 465 VAL A 32 REMARK 465 GLY B 0 REMARK 465 SER B 25 REMARK 465 ASP B 26 REMARK 465 ASP B 27 REMARK 465 ASP B 28 REMARK 465 ASN B 29 REMARK 465 PRO B 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 33 CG OD1 OD2 REMARK 470 SER A 89 OG REMARK 470 GLU A 351 CD OE1 OE2 REMARK 470 SER B 289 OG REMARK 470 GLU B 351 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -56.47 -122.98 REMARK 500 HIS A 86 62.46 36.46 REMARK 500 ASN A 170 52.13 -106.77 REMARK 500 ASN A 180 85.03 -159.76 REMARK 500 ASN A 230 -73.92 -97.54 REMARK 500 VAL A 260 -67.03 -106.60 REMARK 500 ASP A 326 35.09 -142.09 REMARK 500 HIS B 86 55.72 36.28 REMARK 500 HIS B 86 62.15 36.28 REMARK 500 ASN B 170 66.23 -109.48 REMARK 500 ASN B 180 84.52 -150.93 REMARK 500 ASN B 230 -75.66 -98.65 REMARK 500 VAL B 260 -66.42 -106.31 REMARK 500 ASP B 326 35.21 -141.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 3 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 556 O REMARK 620 2 HOH B 483 O 175.4 REMARK 620 3 HOH B 495 O 86.9 89.3 REMARK 620 4 HOH B 516 O 90.2 92.4 91.3 REMARK 620 5 HOH B 426 O 92.4 91.4 178.4 90.1 REMARK 620 6 HOH B 466 O 85.8 91.6 90.1 175.8 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1179 O REMARK 620 2 HOH B 536 O 100.1 REMARK 620 3 HOH A 876 O 93.7 165.5 REMARK 620 4 HOH A 570 O 76.2 92.4 86.6 REMARK 620 5 HOH B 526 O 176.9 82.6 83.5 102.3 REMARK 620 6 HOH B 416 O 103.1 84.7 96.4 176.9 78.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 572 O REMARK 620 2 HOH A 527 O 87.4 REMARK 620 3 HOH A 620 O 176.8 89.9 REMARK 620 4 HOH A 578 O 89.8 91.3 91.9 REMARK 620 5 HOH A 543 O 90.9 90.9 87.5 177.7 REMARK 620 6 HOH A 662 O 94.2 178.4 88.5 88.3 89.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 11 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 416712 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 25-384) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3N8U A 25 384 UNP A7M120 A7M120_BACOV 25 384 DBREF 3N8U B 25 384 UNP A7M120 A7M120_BACOV 25 384 SEQADV 3N8U GLY A 0 UNP A7M120 LEADER SEQUENCE SEQADV 3N8U GLY B 0 UNP A7M120 LEADER SEQUENCE SEQRES 1 A 361 GLY SER ASP ASP ASP ASN PRO THR VAL ASP PRO ALA ASN SEQRES 2 A 361 ILE ASP TYR THR PRO GLU ASN ALA SER SER TRP HIS ASN SEQRES 3 A 361 TYR MSE ARG ASN VAL ALA ALA LEU LEU LYS THR ASP ALA SEQRES 4 A 361 THR ASN LEU TYR ASN ALA TRP ASN SER SER TYR LYS GLY SEQRES 5 A 361 GLY GLU SER TYR ALA SER LEU PHE LYS ALA HIS SER GLY SEQRES 6 A 361 SER PRO TYR ALA SER ALA LEU SER CYS VAL GLU GLU ILE SEQRES 7 A 361 VAL ASP LYS CYS ALA GLU ILE ALA ASN GLU VAL GLY THR SEQRES 8 A 361 ALA LYS ILE GLY ASP PRO TYR ASN LEU TYR LYS ALA GLY SEQRES 9 A 361 ASN THR GLU GLU ALA LEU TYR ALA VAL GLU SER TRP TYR SEQRES 10 A 361 SER TRP HIS SER ARG ASP ASP TYR THR ASN ASN ILE TYR SEQRES 11 A 361 SER ILE ARG ASN ALA TYR TYR GLY SER LEU ASP GLY ASN SEQRES 12 A 361 ILE ASN ALA ASN SER LEU SER THR VAL ILE ALA GLY ALA SEQRES 13 A 361 ASN SER SER LEU ASP THR LYS ILE LYS ASN ALA ILE GLN SEQRES 14 A 361 LYS ALA ALA LYS ALA ILE GLN ASP ILE PRO GLN PRO PHE SEQRES 15 A 361 ARG ASN HIS ILE PRO SER ASN GLU THR VAL ALA ALA MSE SEQRES 16 A 361 ASP ALA CYS ALA GLU LEU GLU SER ILE LEU LYS ASN ASP SEQRES 17 A 361 LEU LYS SER TYR ILE ALA ASN ASN SER ASN ASN ILE ASN SEQRES 18 A 361 THR ASP ALA VAL LEU ASN PRO VAL VAL THR GLN TYR VAL SEQRES 19 A 361 ASP ALA VAL VAL VAL PRO THR TYR LYS SER LEU LYS GLU SEQRES 20 A 361 LYS ASN ASP ALA LEU TYR ASN ALA VAL ILE VAL LEU ALA SEQRES 21 A 361 ASP ASN PRO SER ASN SER ALA PHE GLU THR ALA CYS ASP SEQRES 22 A 361 ALA TRP ILE THR ALA ARG GLU PRO TRP GLU LYS SER GLU SEQRES 23 A 361 ALA PHE LEU PHE GLY PRO VAL ASP GLU MSE GLY LEU ASP SEQRES 24 A 361 PRO ASN MSE ASP SER TRP PRO LEU ASP GLN ASN ALA ILE SEQRES 25 A 361 VAL GLN ILE LEU ASN SER GLN SER TRP SER ASP LEU GLU SEQRES 26 A 361 TRP SER GLU GLY ASP ASP GLU ALA ALA VAL GLU SER ALA SEQRES 27 A 361 GLN ASN VAL ARG GLY PHE HIS THR LEU GLU PHE LEU LEU SEQRES 28 A 361 TYR LYS ASN GLY GLU PRO ARG LYS VAL GLN SEQRES 1 B 361 GLY SER ASP ASP ASP ASN PRO THR VAL ASP PRO ALA ASN SEQRES 2 B 361 ILE ASP TYR THR PRO GLU ASN ALA SER SER TRP HIS ASN SEQRES 3 B 361 TYR MSE ARG ASN VAL ALA ALA LEU LEU LYS THR ASP ALA SEQRES 4 B 361 THR ASN LEU TYR ASN ALA TRP ASN SER SER TYR LYS GLY SEQRES 5 B 361 GLY GLU SER TYR ALA SER LEU PHE LYS ALA HIS SER GLY SEQRES 6 B 361 SER PRO TYR ALA SER ALA LEU SER CYS VAL GLU GLU ILE SEQRES 7 B 361 VAL ASP LYS CYS ALA GLU ILE ALA ASN GLU VAL GLY THR SEQRES 8 B 361 ALA LYS ILE GLY ASP PRO TYR ASN LEU TYR LYS ALA GLY SEQRES 9 B 361 ASN THR GLU GLU ALA LEU TYR ALA VAL GLU SER TRP TYR SEQRES 10 B 361 SER TRP HIS SER ARG ASP ASP TYR THR ASN ASN ILE TYR SEQRES 11 B 361 SER ILE ARG ASN ALA TYR TYR GLY SER LEU ASP GLY ASN SEQRES 12 B 361 ILE ASN ALA ASN SER LEU SER THR VAL ILE ALA GLY ALA SEQRES 13 B 361 ASN SER SER LEU ASP THR LYS ILE LYS ASN ALA ILE GLN SEQRES 14 B 361 LYS ALA ALA LYS ALA ILE GLN ASP ILE PRO GLN PRO PHE SEQRES 15 B 361 ARG ASN HIS ILE PRO SER ASN GLU THR VAL ALA ALA MSE SEQRES 16 B 361 ASP ALA CYS ALA GLU LEU GLU SER ILE LEU LYS ASN ASP SEQRES 17 B 361 LEU LYS SER TYR ILE ALA ASN ASN SER ASN ASN ILE ASN SEQRES 18 B 361 THR ASP ALA VAL LEU ASN PRO VAL VAL THR GLN TYR VAL SEQRES 19 B 361 ASP ALA VAL VAL VAL PRO THR TYR LYS SER LEU LYS GLU SEQRES 20 B 361 LYS ASN ASP ALA LEU TYR ASN ALA VAL ILE VAL LEU ALA SEQRES 21 B 361 ASP ASN PRO SER ASN SER ALA PHE GLU THR ALA CYS ASP SEQRES 22 B 361 ALA TRP ILE THR ALA ARG GLU PRO TRP GLU LYS SER GLU SEQRES 23 B 361 ALA PHE LEU PHE GLY PRO VAL ASP GLU MSE GLY LEU ASP SEQRES 24 B 361 PRO ASN MSE ASP SER TRP PRO LEU ASP GLN ASN ALA ILE SEQRES 25 B 361 VAL GLN ILE LEU ASN SER GLN SER TRP SER ASP LEU GLU SEQRES 26 B 361 TRP SER GLU GLY ASP ASP GLU ALA ALA VAL GLU SER ALA SEQRES 27 B 361 GLN ASN VAL ARG GLY PHE HIS THR LEU GLU PHE LEU LEU SEQRES 28 B 361 TYR LYS ASN GLY GLU PRO ARG LYS VAL GLN MODRES 3N8U MSE A 51 MET SELENOMETHIONINE MODRES 3N8U MSE A 218 MET SELENOMETHIONINE MODRES 3N8U MSE A 319 MET SELENOMETHIONINE MODRES 3N8U MSE A 325 MET SELENOMETHIONINE MODRES 3N8U MSE B 51 MET SELENOMETHIONINE MODRES 3N8U MSE B 218 MET SELENOMETHIONINE MODRES 3N8U MSE B 319 MET SELENOMETHIONINE MODRES 3N8U MSE B 325 MET SELENOMETHIONINE HET MSE A 51 8 HET MSE A 218 8 HET MSE A 319 8 HET MSE A 325 8 HET MSE B 51 8 HET MSE B 218 8 HET MSE B 319 8 HET MSE B 325 8 HET MG A 1 1 HET MG A 2 1 HET CL A 5 1 HET EDO A 7 4 HET EDO A 12 7 HET MG B 3 1 HET CL B 4 1 HET EDO B 6 8 HET EDO B 8 4 HET EDO B 9 4 HET EDO B 10 4 HET EDO B 11 4 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 MG 3(MG 2+) FORMUL 5 CL 2(CL 1-) FORMUL 6 EDO 7(C2 H6 O2) FORMUL 15 HOH *1191(H2 O) HELIX 1 1 ASP A 33 ILE A 37 5 5 HELIX 2 2 ASN A 43 SER A 71 1 29 HELIX 3 3 SER A 78 HIS A 86 1 9 HELIX 4 4 SER A 93 ALA A 115 1 23 HELIX 5 5 ILE A 117 ALA A 126 1 10 HELIX 6 6 ASN A 128 ALA A 135 1 8 HELIX 7 7 HIS A 143 GLY A 161 1 19 HELIX 8 8 SER A 171 ASN A 180 1 10 HELIX 9 9 ASN A 180 ILE A 201 1 22 HELIX 10 10 PRO A 204 HIS A 208 5 5 HELIX 11 11 SER A 211 ASN A 230 1 20 HELIX 12 12 ASN A 230 ASN A 238 1 9 HELIX 13 13 ASN A 239 ASN A 242 5 4 HELIX 14 14 THR A 245 VAL A 260 1 16 HELIX 15 15 VAL A 260 ASN A 285 1 26 HELIX 16 16 SER A 287 LYS A 307 1 21 HELIX 17 17 SER A 308 PHE A 313 5 6 HELIX 18 18 GLY A 314 MSE A 319 1 6 HELIX 19 19 GLY A 320 SER A 327 1 8 HELIX 20 20 ASP A 331 GLN A 342 1 12 HELIX 21 21 SER A 343 GLU A 348 5 6 HELIX 22 22 ASP A 354 ASN A 363 1 10 HELIX 23 23 ARG A 365 LEU A 374 1 10 HELIX 24 24 ASP B 33 ILE B 37 5 5 HELIX 25 25 ASN B 43 SER B 71 1 29 HELIX 26 26 SER B 78 HIS B 86 1 9 HELIX 27 27 SER B 93 ALA B 115 1 23 HELIX 28 28 ILE B 117 ALA B 126 1 10 HELIX 29 29 ASN B 128 ALA B 135 1 8 HELIX 30 30 SER B 138 TRP B 142 5 5 HELIX 31 31 HIS B 143 GLY B 161 1 19 HELIX 32 32 SER B 171 ASN B 180 1 10 HELIX 33 33 ASN B 180 ASP B 200 1 21 HELIX 34 34 PRO B 204 HIS B 208 5 5 HELIX 35 35 SER B 211 ASN B 230 1 20 HELIX 36 36 ASN B 230 ASN B 238 1 9 HELIX 37 37 ASN B 239 ASN B 242 5 4 HELIX 38 38 THR B 245 VAL B 260 1 16 HELIX 39 39 VAL B 260 ASN B 285 1 26 HELIX 40 40 SER B 287 LYS B 307 1 21 HELIX 41 41 SER B 308 PHE B 313 5 6 HELIX 42 42 GLY B 314 MSE B 319 1 6 HELIX 43 43 GLY B 320 SER B 327 1 8 HELIX 44 44 ASP B 331 GLN B 342 1 12 HELIX 45 45 SER B 343 GLU B 348 5 6 HELIX 46 46 ASP B 354 ASN B 363 1 10 HELIX 47 47 ARG B 365 LEU B 374 1 10 SHEET 1 A 2 TYR A 375 LYS A 376 0 SHEET 2 A 2 GLU A 379 PRO A 380 -1 O GLU A 379 N LYS A 376 SHEET 1 B 2 TYR B 375 LYS B 376 0 SHEET 2 B 2 GLU B 379 PRO B 380 -1 O GLU B 379 N LYS B 376 LINK C TYR A 50 N MSE A 51 1555 1555 1.35 LINK C MSE A 51 N ARG A 52 1555 1555 1.36 LINK C ALA A 217 N MSE A 218 1555 1555 1.35 LINK C MSE A 218 N ASP A 219 1555 1555 1.35 LINK C GLU A 318 N MSE A 319 1555 1555 1.35 LINK C MSE A 319 N GLY A 320 1555 1555 1.33 LINK C ASN A 324 N MSE A 325 1555 1555 1.35 LINK C MSE A 325 N ASP A 326 1555 1555 1.33 LINK C TYR B 50 N MSE B 51 1555 1555 1.36 LINK C MSE B 51 N ARG B 52 1555 1555 1.36 LINK C ALA B 217 N MSE B 218 1555 1555 1.36 LINK C MSE B 218 N ASP B 219 1555 1555 1.36 LINK C GLU B 318 N MSE B 319 1555 1555 1.34 LINK C MSE B 319 N GLY B 320 1555 1555 1.35 LINK C ASN B 324 N MSE B 325 1555 1555 1.34 LINK C MSE B 325 N ASP B 326 1555 1555 1.34 LINK MG MG B 3 O HOH B 556 1555 1555 1.93 LINK MG MG A 2 O AHOH A1179 1555 1555 1.94 LINK MG MG B 3 O HOH B 483 1555 1555 1.94 LINK MG MG A 2 O HOH B 536 1555 1555 1.95 LINK MG MG A 2 O HOH A 876 1555 1555 1.99 LINK MG MG A 1 O HOH A 572 1555 1555 2.02 LINK MG MG B 3 O HOH B 495 1555 1555 2.05 LINK MG MG B 3 O HOH B 516 1555 1555 2.06 LINK MG MG B 3 O HOH B 426 1555 1555 2.06 LINK MG MG A 1 O HOH A 527 1555 1555 2.06 LINK MG MG A 1 O HOH A 620 1555 1555 2.07 LINK MG MG B 3 O HOH B 466 1555 1555 2.10 LINK MG MG A 1 O HOH A 578 1555 1555 2.12 LINK MG MG A 1 O HOH A 543 1555 1555 2.12 LINK MG MG A 1 O HOH A 662 1555 1555 2.13 LINK MG MG A 2 O HOH A 570 1555 1555 2.31 LINK MG MG A 2 O HOH B 526 1555 1555 2.34 LINK MG MG A 2 O HOH B 416 1555 1555 2.69 CISPEP 1 SER A 89 PRO A 90 0 -8.62 CISPEP 2 GLN A 203 PRO A 204 0 -7.54 CISPEP 3 TRP A 328 PRO A 329 0 -3.89 CISPEP 4 SER B 89 PRO B 90 0 4.52 CISPEP 5 SER B 89 PRO B 90 0 7.05 CISPEP 6 GLN B 203 PRO B 204 0 -1.74 CISPEP 7 TRP B 328 PRO B 329 0 -4.67 SITE 1 AC1 7 GLU A 111 HOH A 527 HOH A 543 HOH A 572 SITE 2 AC1 7 HOH A 578 HOH A 620 HOH A 662 SITE 1 AC2 6 HOH A 570 HOH A 876 HOH A1179 HOH B 416 SITE 2 AC2 6 HOH B 526 HOH B 536 SITE 1 AC3 5 TRP A 142 SER A 144 PRO A 204 ARG A 206 SITE 2 AC3 5 HOH A 524 SITE 1 AC4 4 PRO A 329 LEU A 330 ASP A 331 ASN A 363 SITE 1 AC5 11 ASN A 110 THR A 114 GLY A 118 ASP A 119 SITE 2 AC5 11 ASN A 122 GLU A 225 LYS A 229 HOH A 656 SITE 3 AC5 11 HOH A 665 HOH A 759 HOH A 828 SITE 1 AC6 6 HOH B 426 HOH B 466 HOH B 483 HOH B 495 SITE 2 AC6 6 HOH B 516 HOH B 556 SITE 1 AC7 3 TRP B 142 SER B 144 ARG B 206 SITE 1 AC8 5 LYS B 104 GLU B 107 ASP B 317 HOH B 851 SITE 2 AC8 5 HOH B1104 SITE 1 AC9 6 SER B 72 GLY B 75 GLY B 76 HOH B 661 SITE 2 AC9 6 HOH B 676 HOH B 722 SITE 1 BC1 4 THR B 264 GLU B 303 LYS B 307 HOH B 544 SITE 1 BC2 2 ASN B 150 GLN B 199 SITE 1 BC3 3 GLN B 203 PRO B 204 ASN B 207 CRYST1 131.470 49.930 128.320 90.00 117.58 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007606 0.000000 0.003973 0.00000 SCALE2 0.000000 0.020028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008792 0.00000 MASTER 403 0 20 47 4 0 20 6 0 0 0 56 END