HEADER TRANSFERASE 26-MAY-10 3N6L TITLE THE CRYSTAL STRUCTURE OF RNA-DEPENDENT RNA POLYMERASE OF EV71 VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS 71; SOURCE 3 ORGANISM_TAXID: 39054; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS EV71, RDRP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.WU,Z.H.RAO REVDAT 2 09-SEP-20 3N6L 1 TITLE REMARK LINK REVDAT 1 15-JUN-11 3N6L 0 JRNL AUTH Y.WU,Z.LOU,Y.MIAO,Y.YU,H.DONG,W.PENG,M.BARTLAM,X.LI,Z.RAO JRNL TITL STRUCTURES OF EV71 RNA-DEPENDENT RNA POLYMERASE IN COMPLEX JRNL TITL 2 WITH SUBSTRATE AND ANALOGUE PROVIDE A DRUG TARGET AGAINST JRNL TITL 3 THE HAND-FOOT-AND-MOUTH DISEASE PANDEMIC IN CHINA. JRNL REF PROTEIN CELL V. 1 491 2010 JRNL REFN ISSN 1674-800X JRNL PMID 21203964 JRNL DOI 10.1007/S13238-010-0061-7 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1307 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.16000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -1.75000 REMARK 3 B12 (A**2) : 0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3795 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5146 ; 1.757 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 6.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;38.118 ;23.977 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 649 ;20.971 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.009 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2896 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1719 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2569 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.269 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.031 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2357 ; 0.921 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3729 ; 1.652 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1642 ; 2.203 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1417 ; 3.478 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-09; 05-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; SSRF REMARK 200 BEAMLINE : BL-17A; BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270; MARMOSAIC 225 REMARK 200 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 89.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.16200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.08100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.08100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.16200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 31 O HOH A 530 1.63 REMARK 500 O HOH A 505 O HOH A 530 1.70 REMARK 500 O HOH A 528 O HOH A 530 1.82 REMARK 500 O HOH A 529 O HOH A 530 1.95 REMARK 500 O HOH A 505 O HOH A 529 2.03 REMARK 500 O HOH A 497 O HOH A 557 2.05 REMARK 500 OG1 THR A 313 OG1 THR A 347 2.08 REMARK 500 OE1 GLU A 99 O HOH A 532 2.13 REMARK 500 O HOH A 505 O HOH A 528 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 291 CB CYS A 291 SG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 161.40 66.45 REMARK 500 VAL A 29 7.60 -67.71 REMARK 500 PRO A 48 -14.17 -49.80 REMARK 500 PHE A 54 -88.65 -63.37 REMARK 500 GLU A 55 -37.72 -27.79 REMARK 500 LEU A 67 124.81 176.11 REMARK 500 ALA A 109 150.92 -47.46 REMARK 500 ARG A 136 27.99 46.97 REMARK 500 ASN A 201 64.37 -113.38 REMARK 500 ALA A 231 147.79 179.68 REMARK 500 ARG A 277 -111.80 65.78 REMARK 500 LYS A 360 9.89 41.02 REMARK 500 SER A 361 153.49 -42.03 REMARK 500 PHE A 364 45.80 -75.15 REMARK 500 ASN A 365 -146.40 -69.47 REMARK 500 LYS A 376 -17.12 75.41 REMARK 500 PHE A 385 78.89 -103.41 REMARK 500 PRO A 386 -9.33 -58.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 463 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 271 NE2 REMARK 620 2 HIS A 273 NE2 109.2 REMARK 620 3 CYS A 282 SG 93.0 109.7 REMARK 620 4 HOH A 466 O 117.1 99.5 127.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 463 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N6M RELATED DB: PDB REMARK 900 RELATED ID: 3N6N RELATED DB: PDB DBREF 3N6L A 1 462 UNP D3K0N8 D3K0N8_9ENTO 1732 2193 SEQRES 1 A 462 GLY GLU ILE GLN TRP VAL LYS PRO ASN LYS GLU THR GLY SEQRES 2 A 462 ARG LEU SER ILE ASN GLY PRO THR ARG THR LYS LEU GLU SEQRES 3 A 462 PRO SER VAL PHE HIS ASP VAL PHE GLU GLY ASN LYS GLU SEQRES 4 A 462 PRO ALA VAL LEU HIS SER LYS ASP PRO ARG LEU GLU VAL SEQRES 5 A 462 ASP PHE GLU GLN ALA LEU PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 462 THR LEU TYR GLU PRO ASP GLU TYR ILE LYS GLU ALA ALA SEQRES 7 A 462 LEU HIS TYR ALA ASN GLN LEU LYS GLN LEU GLU ILE ASN SEQRES 8 A 462 THR SER GLN MET SER MET GLU GLU ALA CYS TYR GLY THR SEQRES 9 A 462 GLU ASN LEU GLU ALA ILE ASP LEU HIS THR SER ALA GLY SEQRES 10 A 462 TYR PRO TYR SER ALA LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 462 LEU ASP PRO THR THR ARG ASP VAL SER LYS MET LYS PHE SEQRES 12 A 462 TYR MET ASP LYS TYR GLY LEU ASP LEU PRO TYR SER THR SEQRES 13 A 462 TYR VAL LYS ASP GLU LEU ARG SER ILE ASP LYS ILE LYS SEQRES 14 A 462 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 462 ASP SER VAL TYR LEU ARG MET ALA PHE GLY HIS LEU TYR SEQRES 16 A 462 GLU THR PHE HIS ALA ASN PRO GLY THR ILE THR GLY SER SEQRES 17 A 462 ALA VAL GLY CYS ASN PRO ASP THR PHE TRP SER LYS LEU SEQRES 18 A 462 PRO ILE LEU LEU PRO GLY SER LEU PHE ALA PHE ASP TYR SEQRES 19 A 462 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ARG SEQRES 20 A 462 ALA LEU GLU LEU VAL LEU ARG GLU ILE GLY TYR SER GLU SEQRES 21 A 462 GLY ALA ILE SER LEU ILE GLU GLY ILE ASN HIS THR HIS SEQRES 22 A 462 HIS VAL TYR ARG ASN LYS THR TYR CYS VAL LEU GLY GLY SEQRES 23 A 462 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 462 MET ILE ASN ASN ILE ILE ILE ARG ALA LEU LEU ILE LYS SEQRES 25 A 462 THR PHE LYS GLY ILE ASP LEU ASP GLU LEU ASN MET VAL SEQRES 26 A 462 ALA TYR GLY ASP ASP VAL LEU ALA SER TYR PRO PHE PRO SEQRES 27 A 462 ILE ASP CYS LEU GLU LEU ALA LYS THR GLY LYS GLU TYR SEQRES 28 A 462 GLY LEU THR MET THR PRO ALA ASP LYS SER PRO CYS PHE SEQRES 29 A 462 ASN GLU VAL ASN TRP ASP ASN ALA THR PHE LEU LYS ARG SEQRES 30 A 462 GLY PHE LEU PRO ASP GLU GLN PHE PRO PHE LEU ILE HIS SEQRES 31 A 462 PRO THR MET PRO MET ARG GLU ILE HIS GLU SER ILE ARG SEQRES 32 A 462 TRP THR LYS ASP ALA ARG ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 462 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY LYS GLN GLU SEQRES 34 A 462 TYR GLU LYS PHE VAL SER THR ILE ARG SER VAL PRO VAL SEQRES 35 A 462 GLY ARG ALA LEU ALA ILE PRO ASN TYR GLU ASN LEU ARG SEQRES 36 A 462 ARG ASN TRP LEU GLU LEU PHE HET NI A 463 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI NI 2+ FORMUL 3 HOH *96(H2 O) HELIX 1 1 ASN A 9 GLY A 13 1 5 HELIX 2 2 ASP A 53 PHE A 59 1 7 HELIX 3 3 SER A 60 TYR A 62 5 3 HELIX 4 4 ASP A 71 LYS A 86 1 16 HELIX 5 5 GLN A 87 GLU A 89 5 3 HELIX 6 6 SER A 96 GLY A 103 1 8 HELIX 7 7 PRO A 119 GLY A 124 1 6 HELIX 8 8 LYS A 126 LEU A 131 1 6 HELIX 9 9 VAL A 138 GLY A 149 1 12 HELIX 10 10 ILE A 165 LYS A 170 1 6 HELIX 11 11 SER A 180 ASN A 201 1 22 HELIX 12 12 ASN A 213 LEU A 225 1 13 HELIX 13 13 GLY A 236 LEU A 241 1 6 HELIX 14 14 SER A 242 ILE A 256 1 15 HELIX 15 15 SER A 259 LEU A 265 1 7 HELIX 16 16 ILE A 266 ASN A 270 1 5 HELIX 17 17 GLY A 293 PHE A 314 1 22 HELIX 18 18 ASP A 318 LEU A 322 5 5 HELIX 19 19 ASP A 340 TYR A 351 1 12 HELIX 20 20 PRO A 394 ARG A 403 1 10 HELIX 21 21 ASN A 410 TRP A 423 1 14 HELIX 22 22 GLY A 426 ARG A 438 1 13 HELIX 23 23 VAL A 440 ALA A 445 1 6 HELIX 24 24 ASN A 450 GLU A 460 1 11 SHEET 1 A 5 GLU A 2 PRO A 8 0 SHEET 2 A 5 LYS A 279 LEU A 284 -1 O THR A 280 N LYS A 7 SHEET 3 A 5 HIS A 271 TYR A 276 -1 N THR A 272 O VAL A 283 SHEET 4 A 5 TYR A 154 VAL A 158 1 N TYR A 154 O HIS A 273 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ILE A 176 N TYR A 157 SHEET 1 B 2 GLU A 26 PRO A 27 0 SHEET 2 B 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 C 2 LYS A 38 PRO A 40 0 SHEET 2 C 2 LEU A 162 SER A 164 -1 O ARG A 163 N GLU A 39 SHEET 1 D 3 SER A 228 PHE A 230 0 SHEET 2 D 3 ASP A 330 TYR A 335 -1 O TYR A 335 N SER A 228 SHEET 3 D 3 ASN A 323 TYR A 327 -1 N VAL A 325 O LEU A 332 SHEET 1 E 2 PHE A 232 TYR A 234 0 SHEET 2 E 2 MET A 355 PRO A 357 -1 O THR A 356 N ASP A 233 SHEET 1 F 2 GLY A 378 PRO A 381 0 SHEET 2 F 2 ILE A 389 THR A 392 -1 O HIS A 390 N LEU A 380 LINK NE2 HIS A 271 NI NI A 463 1555 1555 2.19 LINK NE2 HIS A 273 NI NI A 463 1555 1555 2.02 LINK SG CYS A 282 NI NI A 463 1555 1555 2.18 LINK NI NI A 463 O HOH A 466 1555 1555 2.29 CISPEP 1 TYR A 118 PRO A 119 0 -1.38 SITE 1 AC1 4 HIS A 271 HIS A 273 CYS A 282 HOH A 466 CRYST1 103.450 103.450 132.243 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009667 0.005581 0.000000 0.00000 SCALE2 0.000000 0.011162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007562 0.00000 MASTER 357 0 1 24 16 0 1 6 0 0 0 36 END