HEADER VIRAL PROTEIN 21-MAY-10 3N40 TITLE CRYSTAL STRUCTURE OF THE IMMATURE ENVELOPE GLYCOPROTEIN COMPLEX OF TITLE 2 CHIKUNGUNYA VIRUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: P62 ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: P; COMPND 4 FRAGMENT: POLYPROTEIN FRAGMENT RESIDUES 266-666; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: E1 ENVELOPE GLYCOPROTEIN; COMPND 9 CHAIN: F; COMPND 10 FRAGMENT: POLYPROTEIN FRAGMENT RESIDUES 810-1200; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHIKUNGUNYA VIRUS; SOURCE 3 ORGANISM_COMMON: CHIKV; SOURCE 4 ORGANISM_TAXID: 37124; SOURCE 5 STRAIN: 05-115; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMRBIP/V5 HISA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: CHIKUNGUNYA VIRUS; SOURCE 13 ORGANISM_COMMON: CHIKV; SOURCE 14 ORGANISM_TAXID: 37124; SOURCE 15 STRAIN: 05-115; SOURCE 16 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER 2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PMRBIP/V5 HISA KEYWDS VIRAL PROTEIN, IMMATURE HETERODIMER, ALPHAVIRUS, RECEPTOR BINDING, KEYWDS 2 MEMBRANE FUSION EXPDTA X-RAY DIFFRACTION AUTHOR J.VOSS,M.C.VANEY,S.DUQUERROY,F.A.REY REVDAT 5 29-JUL-20 3N40 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 11-APR-12 3N40 1 SHEET VERSN REVDAT 3 15-DEC-10 3N40 1 JRNL REVDAT 2 08-DEC-10 3N40 1 TITLE REVDAT 1 01-DEC-10 3N40 0 JRNL AUTH J.E.VOSS,M.C.VANEY,S.DUQUERROY,C.VONRHEIN,C.GIRARD-BLANC, JRNL AUTH 2 E.CRUBLET,A.THOMPSON,G.BRICOGNE,F.A.REY JRNL TITL GLYCOPROTEIN ORGANIZATION OF CHIKUNGUNYA VIRUS PARTICLES JRNL TITL 2 REVEALED BY X-RAY CRYSTALLOGRAPHY. JRNL REF NATURE V. 468 709 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 21124458 JRNL DOI 10.1038/NATURE09555 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.ROUSSEL,J.LESCAR,M.C.VANEY,G.WENGLER,F.A.REY REMARK 1 TITL STRUCTURE AND INTERACTIONS AT THE VIRAL SURFACE OF THE REMARK 1 TITL 2 ENVELOPE PROTEIN E1 OF SEMLIKI FOREST VIRUS. REMARK 1 REF STRUCTURE V. 14 75 2006 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 16407067 REMARK 1 DOI 10.1016/J.STR.2005.09.014 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.L.GIBBONS,M.C.VANEY,A.ROUSSEL,A.VIGOUROUX,B.REILLY, REMARK 1 AUTH 2 J.LEPAULT,M.KIELIAN,F.A.REY REMARK 1 TITL CONFORMATIONAL CHANGE AND PROTEIN-PROTEIN INTERACTIONS OF REMARK 1 TITL 2 THE FUSION PROTEIN OF SEMLIKI FOREST VIRUS. REMARK 1 REF NATURE V. 427 320 2004 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 14737160 REMARK 1 DOI 10.1038/NATURE02239 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.LESCAR,A.ROUSSEL,M.W.WIEN,J.NAVAZA,S.D.FULLER,G.WENGLER, REMARK 1 AUTH 2 F.A.REY REMARK 1 TITL THE FUSION GLYCOPROTEIN SHELL OF SEMLIKI FOREST VIRUS: AN REMARK 1 TITL 2 ICOSAHEDRAL ASSEMBLY PRIMED FOR FUSOGENIC ACTIVATION AT REMARK 1 TITL 3 ENDOSOMAL PH. REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 105 137 2001 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 11301009 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.LI,J.JOSE,Y.XIANG,R.J.KUHN,M.G.ROSSMANN REMARK 1 TITL STRUCTURAL CHANGES OF ENVELOPE PROTEINS DURING ALPHAVIRUS REMARK 1 TITL 2 FUSION. REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 50822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2580 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3547 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2319 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3359 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE : 0.2307 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 188 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6157 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.72740 REMARK 3 B22 (A**2) : 11.18420 REMARK 3 B33 (A**2) : -8.45670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.310 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.236 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6433 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8779 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2114 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 157 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 937 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6433 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 867 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7202 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {P|5:73} REMARK 3 ORIGIN FOR THE GROUP (A): -55.6871 11.8986 32.3220 REMARK 3 T TENSOR REMARK 3 T11: -0.1105 T22: 0.0141 REMARK 3 T33: 0.0393 T12: 0.0067 REMARK 3 T13: 0.0389 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.1013 L22: 1.4297 REMARK 3 L33: 1.1127 L12: 0.9397 REMARK 3 L13: 0.3415 L23: 0.1954 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: -0.1652 S13: -0.0171 REMARK 3 S21: 0.0446 S22: -0.1106 S23: 0.0437 REMARK 3 S31: -0.0774 S32: -0.0025 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {P|74:234 298:333} REMARK 3 ORIGIN FOR THE GROUP (A): -33.2887 15.6975 16.9660 REMARK 3 T TENSOR REMARK 3 T11: -0.0547 T22: -0.0872 REMARK 3 T33: -0.0461 T12: 0.0332 REMARK 3 T13: 0.0262 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.6124 L22: 1.2104 REMARK 3 L33: 0.7403 L12: -0.7908 REMARK 3 L13: -0.1844 L23: 0.3193 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: 0.1323 S13: 0.0764 REMARK 3 S21: -0.1648 S22: -0.0557 S23: 0.0243 REMARK 3 S31: -0.0939 S32: -0.1012 S33: -0.0452 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {P|235:297} REMARK 3 ORIGIN FOR THE GROUP (A): -48.3766 44.3500 31.5135 REMARK 3 T TENSOR REMARK 3 T11: -0.0555 T22: -0.0817 REMARK 3 T33: 0.0664 T12: 0.1434 REMARK 3 T13: -0.0750 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 5.4044 L22: 0.7684 REMARK 3 L33: 0.6112 L12: 1.1716 REMARK 3 L13: -0.3609 L23: 1.2355 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: -0.0873 S13: 0.1285 REMARK 3 S21: -0.0312 S22: -0.0002 S23: -0.0020 REMARK 3 S31: -0.1204 S32: -0.1039 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {P|334:406} REMARK 3 ORIGIN FOR THE GROUP (A): -1.5431 -13.0033 9.2079 REMARK 3 T TENSOR REMARK 3 T11: -0.0098 T22: -0.1007 REMARK 3 T33: -0.0167 T12: 0.0548 REMARK 3 T13: 0.0706 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 3.0823 L22: 1.1548 REMARK 3 L33: 1.6937 L12: -0.6114 REMARK 3 L13: -1.9043 L23: 1.6671 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.1605 S13: 0.0448 REMARK 3 S21: -0.2173 S22: -0.0039 S23: -0.1223 REMARK 3 S31: 0.0334 S32: 0.0733 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {F|-1:39 127:171 255:281} REMARK 3 ORIGIN FOR THE GROUP (A): -10.2902 -36.1788 28.2129 REMARK 3 T TENSOR REMARK 3 T11: -0.0681 T22: -0.0514 REMARK 3 T33: 0.0245 T12: 0.0514 REMARK 3 T13: 0.0260 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.4171 L22: 2.2940 REMARK 3 L33: 1.0447 L12: 0.3093 REMARK 3 L13: -0.4850 L23: -0.4485 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: -0.1560 S13: -0.0048 REMARK 3 S21: -0.0461 S22: -0.1104 S23: 0.0681 REMARK 3 S31: 0.0515 S32: -0.0562 S33: 0.1429 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {F|40:51 111:126 172:216 238:254} REMARK 3 ORIGIN FOR THE GROUP (A): -16.0741 -1.6381 33.6686 REMARK 3 T TENSOR REMARK 3 T11: -0.0088 T22: -0.0737 REMARK 3 T33: -0.0035 T12: 0.0376 REMARK 3 T13: 0.0146 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 2.9044 REMARK 3 L33: 1.7377 L12: -0.1795 REMARK 3 L13: -0.5616 L23: 1.3319 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0103 S13: -0.1128 REMARK 3 S21: 0.3653 S22: 0.0922 S23: 0.1022 REMARK 3 S31: 0.2344 S32: 0.0399 S33: -0.0934 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {F|52:110 217:237} REMARK 3 ORIGIN FOR THE GROUP (A): -27.9979 28.4344 36.4233 REMARK 3 T TENSOR REMARK 3 T11: -0.0321 T22: -0.0698 REMARK 3 T33: -0.0217 T12: 0.0121 REMARK 3 T13: 0.0526 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.0806 L22: 2.9026 REMARK 3 L33: 1.1149 L12: -0.7406 REMARK 3 L13: 0.1391 L23: 0.3696 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: -0.0366 S13: 0.0602 REMARK 3 S21: 0.1291 S22: -0.0918 S23: 0.0759 REMARK 3 S31: -0.1609 S32: -0.0288 S33: 0.1461 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {F|282:293} REMARK 3 ORIGIN FOR THE GROUP (A): -12.6939 -59.5336 26.4988 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: -0.0800 REMARK 3 T33: 0.0422 T12: -0.0073 REMARK 3 T13: 0.1009 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3697 L22: 0.2241 REMARK 3 L33: 0.0126 L12: 0.2946 REMARK 3 L13: -0.5375 L23: -0.2663 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0071 S13: -0.0047 REMARK 3 S21: -0.0098 S22: -0.0039 S23: -0.0053 REMARK 3 S31: 0.0259 S32: 0.0066 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {F|294:391} REMARK 3 ORIGIN FOR THE GROUP (A): 0.3764 -49.1822 9.1304 REMARK 3 T TENSOR REMARK 3 T11: -0.0347 T22: -0.1444 REMARK 3 T33: -0.0566 T12: 0.0399 REMARK 3 T13: 0.0886 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.0990 L22: 0.9972 REMARK 3 L33: 5.0625 L12: 0.5814 REMARK 3 L13: -2.3283 L23: -1.9032 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0033 S13: -0.1201 REMARK 3 S21: -0.0597 S22: -0.0675 S23: 0.0064 REMARK 3 S31: 0.1814 S32: 0.0058 S33: 0.0777 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.14 REMARK 200 MONOCHROMATOR : (SI 311) OR (SI 111) REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI- REMARK 200 MORPH MIRRORS PLUS CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51008 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD+MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: 2ALA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% PEG4K, 100MM NAACETATE, 100MM REMARK 280 HEPES PH7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.37000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.51500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.51500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.37000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA P 11 -103.60 55.75 REMARK 500 ASP P 124 -8.51 76.97 REMARK 500 ASN P 136 -95.86 60.04 REMARK 500 THR P 151 -100.85 -112.08 REMARK 500 MET P 161 116.92 -166.40 REMARK 500 ASP P 196 80.32 -156.51 REMARK 500 HIS P 206 -60.16 -93.35 REMARK 500 THR P 228 -68.82 -104.74 REMARK 500 SER P 249 -58.72 66.65 REMARK 500 ASN P 302 75.52 -69.92 REMARK 500 ASP P 314 33.84 -94.46 REMARK 500 MET P 364 30.07 -92.83 REMARK 500 THR F 126 93.77 10.71 REMARK 500 ALA F 148 48.82 -80.15 REMARK 500 ASP F 151 -39.72 -132.66 REMARK 500 ASP F 158 -1.35 70.72 REMARK 500 LYS F 181 -109.67 54.07 REMARK 500 GLU F 347 111.29 -162.46 REMARK 500 CYS F 370 -114.59 66.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUES ARE PART OF THE LINKER BETWEEN P AND F CHAINS. LINKER REMARK 999 WAS CLEAVED BY CHYMOTRYPSIN BEFORE CRYSTALLIZATION. DBREF 3N40 P 5 405 UNP Q1H8W5 Q1H8W5_CHIKV 266 666 DBREF 3N40 F 1 391 UNP Q1H8W5 Q1H8W5_CHIKV 810 1200 SEQADV 3N40 GLU P 64 UNP Q1H8W5 ARG 325 ENGINEERED MUTATION SEQADV 3N40 GLY F -1 UNP Q1H8W5 SEE REMARK 999 SEQADV 3N40 GLY F 0 UNP Q1H8W5 SEE REMARK 999 SEQRES 1 P 401 PRO VAL MET CYS LEU LEU ALA ASN THR THR PHE PRO CYS SEQRES 2 P 401 SER GLN PRO PRO CYS THR PRO CYS CYS TYR GLU LYS GLU SEQRES 3 P 401 PRO GLU GLU THR LEU ARG MET LEU GLU ASP ASN VAL MET SEQRES 4 P 401 ARG PRO GLY TYR TYR GLN LEU LEU GLN ALA SER LEU THR SEQRES 5 P 401 CYS SER PRO HIS ARG GLN ARG GLU SER THR LYS ASP ASN SEQRES 6 P 401 PHE ASN VAL TYR LYS ALA THR ARG PRO TYR LEU ALA HIS SEQRES 7 P 401 CYS PRO ASP CYS GLY GLU GLY HIS SER CYS HIS SER PRO SEQRES 8 P 401 VAL ALA LEU GLU ARG ILE ARG ASN GLU ALA THR ASP GLY SEQRES 9 P 401 THR LEU LYS ILE GLN VAL SER LEU GLN ILE GLY ILE LYS SEQRES 10 P 401 THR ASP ASP SER HIS ASP TRP THR LYS LEU ARG TYR MET SEQRES 11 P 401 ASP ASN HIS MET PRO ALA ASP ALA GLU ARG ALA GLY LEU SEQRES 12 P 401 PHE VAL ARG THR SER ALA PRO CYS THR ILE THR GLY THR SEQRES 13 P 401 MET GLY HIS PHE ILE LEU ALA ARG CYS PRO LYS GLY GLU SEQRES 14 P 401 THR LEU THR VAL GLY PHE THR ASP SER ARG LYS ILE SER SEQRES 15 P 401 HIS SER CYS THR HIS PRO PHE HIS HIS ASP PRO PRO VAL SEQRES 16 P 401 ILE GLY ARG GLU LYS PHE HIS SER ARG PRO GLN HIS GLY SEQRES 17 P 401 LYS GLU LEU PRO CYS SER THR TYR VAL GLN SER THR ALA SEQRES 18 P 401 ALA THR THR GLU GLU ILE GLU VAL HIS MET PRO PRO ASP SEQRES 19 P 401 THR PRO ASP ARG THR LEU MET SER GLN GLN SER GLY ASN SEQRES 20 P 401 VAL LYS ILE THR VAL ASN GLY GLN THR VAL ARG TYR LYS SEQRES 21 P 401 CYS ASN CYS GLY GLY SER ASN GLU GLY LEU THR THR THR SEQRES 22 P 401 ASP LYS VAL ILE ASN ASN CYS LYS VAL ASP GLN CYS HIS SEQRES 23 P 401 ALA ALA VAL THR ASN HIS LYS LYS TRP GLN TYR ASN SER SEQRES 24 P 401 PRO LEU VAL PRO ARG ASN ALA GLU LEU GLY ASP ARG LYS SEQRES 25 P 401 GLY LYS ILE HIS ILE PRO PHE PRO LEU ALA ASN VAL THR SEQRES 26 P 401 CYS ARG VAL PRO LYS ALA ARG ASN PRO THR VAL THR TYR SEQRES 27 P 401 GLY LYS ASN GLN VAL ILE MET LEU LEU TYR PRO ASP HIS SEQRES 28 P 401 PRO THR LEU LEU SER TYR ARG ASN MET GLY GLU GLU PRO SEQRES 29 P 401 ASN TYR GLN GLU GLU TRP VAL MET HIS LYS LYS GLU VAL SEQRES 30 P 401 VAL LEU THR VAL PRO THR GLU GLY LEU GLU VAL THR TRP SEQRES 31 P 401 GLY ASN ASN GLU PRO TYR LYS TYR TRP PRO GLN SEQRES 1 F 393 GLY GLY TYR GLU HIS VAL THR VAL ILE PRO ASN THR VAL SEQRES 2 F 393 GLY VAL PRO TYR LYS THR LEU VAL ASN ARG PRO GLY TYR SEQRES 3 F 393 SER PRO MET VAL LEU GLU MET GLU LEU LEU SER VAL THR SEQRES 4 F 393 LEU GLU PRO THR LEU SER LEU ASP TYR ILE THR CYS GLU SEQRES 5 F 393 TYR LYS THR VAL ILE PRO SER PRO TYR VAL LYS CYS CYS SEQRES 6 F 393 GLY THR ALA GLU CYS LYS ASP LYS ASN LEU PRO ASP TYR SEQRES 7 F 393 SER CYS LYS VAL PHE THR GLY VAL TYR PRO PHE MET TRP SEQRES 8 F 393 GLY GLY ALA TYR CYS PHE CYS ASP ALA GLU ASN THR GLN SEQRES 9 F 393 LEU SER GLU ALA HIS VAL GLU LYS SER GLU SER CYS LYS SEQRES 10 F 393 THR GLU PHE ALA SER ALA TYR ARG ALA HIS THR ALA SER SEQRES 11 F 393 ALA SER ALA LYS LEU ARG VAL LEU TYR GLN GLY ASN ASN SEQRES 12 F 393 ILE THR VAL THR ALA TYR ALA ASN GLY ASP HIS ALA VAL SEQRES 13 F 393 THR VAL LYS ASP ALA LYS PHE ILE VAL GLY PRO MET SER SEQRES 14 F 393 SER ALA TRP THR PRO PHE ASP ASN LYS ILE VAL VAL TYR SEQRES 15 F 393 LYS GLY ASP VAL TYR ASN MET ASP TYR PRO PRO PHE GLY SEQRES 16 F 393 ALA GLY ARG PRO GLY GLN PHE GLY ASP ILE GLN SER ARG SEQRES 17 F 393 THR PRO GLU SER LYS ASP VAL TYR ALA ASN THR GLN LEU SEQRES 18 F 393 VAL LEU GLN ARG PRO ALA ALA GLY THR VAL HIS VAL PRO SEQRES 19 F 393 TYR SER GLN ALA PRO SER GLY PHE LYS TYR TRP LEU LYS SEQRES 20 F 393 GLU ARG GLY ALA SER LEU GLN HIS THR ALA PRO PHE GLY SEQRES 21 F 393 CYS GLN ILE ALA THR ASN PRO VAL ARG ALA VAL ASN CYS SEQRES 22 F 393 ALA VAL GLY ASN MET PRO ILE SER ILE ASP ILE PRO GLU SEQRES 23 F 393 ALA ALA PHE THR ARG VAL VAL ASP ALA PRO SER LEU THR SEQRES 24 F 393 ASP MET SER CYS GLU VAL PRO ALA CYS THR HIS SER SER SEQRES 25 F 393 ASP PHE GLY GLY VAL ALA ILE ILE LYS TYR ALA ALA SER SEQRES 26 F 393 LYS LYS GLY LYS CYS ALA VAL HIS SER MET THR ASN ALA SEQRES 27 F 393 VAL THR ILE ARG GLU ALA GLU ILE GLU VAL GLU GLY ASN SEQRES 28 F 393 SER GLN LEU GLN ILE SER PHE SER THR ALA LEU ALA SER SEQRES 29 F 393 ALA GLU PHE ARG VAL GLN VAL CYS SER THR GLN VAL HIS SEQRES 30 F 393 CYS ALA ALA GLU CYS HIS PRO PRO LYS ASP HIS ILE VAL SEQRES 31 F 393 ASN TYR PRO MODRES 3N40 ASN F 141 ASN GLYCOSYLATION SITE MODRES 3N40 ASN P 12 ASN GLYCOSYLATION SITE MODRES 3N40 ASN P 327 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NDG B 2 14 HET NAG P2001 14 HET ACT P 1 4 HET ACT P 2 4 HET ACT P 3 4 HET ACT P 406 4 HET ACT F 392 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM ACT ACETATE ION FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 NDG C8 H15 N O6 FORMUL 6 ACT 5(C2 H3 O2 1-) FORMUL 11 HOH *416(H2 O) HELIX 1 6 GLU F 112 THR F 116 5 5 HELIX 2 7 SER F 238 ARG F 247 1 10 HELIX 3 8 SER F 250 ALA F 255 1 6 HELIX 4 9 PRO F 256 CYS F 259 5 4 HELIX 5 10 PRO F 283 PHE F 287 5 5 SHEET 1 A 2 MET P 7 LEU P 10 0 SHEET 2 A 2 THR P 13 PRO P 16 -1 O PHE P 15 N CYS P 8 SHEET 1 B 2 ALA P 81 CYS P 83 0 SHEET 2 B 2 CYS P 92 SER P 94 -1 O SER P 94 N ALA P 81 SHEET 1 C 4 LEU P 98 ARG P 102 0 SHEET 2 C 4 LEU P 110 ILE P 120 -1 O LYS P 111 N ARG P 102 SHEET 3 C 4 HIS P 126 ASP P 135 -1 O ARG P 132 N GLN P 117 SHEET 4 C 4 MET P 138 GLU P 143 -1 O ALA P 140 N TYR P 133 SHEET 1 D 3 LEU P 98 ARG P 102 0 SHEET 2 D 3 LEU P 110 ILE P 120 -1 O LYS P 111 N ARG P 102 SHEET 3 D 3 THR P 156 ARG P 168 -1 O ILE P 165 N ILE P 112 SHEET 1 E 3 PHE P 148 ARG P 150 0 SHEET 2 E 3 GLY P 172 THR P 180 -1 O THR P 176 N ARG P 150 SHEET 3 E 3 SER P 186 HIS P 195 -1 O HIS P 187 N PHE P 179 SHEET 1 F 2 LYS P 213 TYR P 220 0 SHEET 2 F 2 LEU P 325 VAL P 332 -1 O VAL P 328 N CYS P 217 SHEET 1 G 3 GLN P 300 TYR P 301 0 SHEET 2 G 3 GLU P 230 HIS P 234 -1 N HIS P 234 O GLN P 300 SHEET 3 G 3 GLY P 317 HIS P 320 -1 O GLY P 317 N VAL P 233 SHEET 1 H 4 THR P 239 PRO P 240 0 SHEET 2 H 4 CYS P 289 VAL P 293 -1 O VAL P 293 N THR P 239 SHEET 3 H 4 VAL P 261 CYS P 265 -1 N ARG P 262 O ALA P 292 SHEET 4 H 4 GLU P 272 THR P 275 -1 O THR P 275 N VAL P 261 SHEET 1 I 3 MET P 245 GLN P 248 0 SHEET 2 I 3 ASN P 251 ILE P 254 -1 O LYS P 253 N SER P 246 SHEET 3 I 3 LYS P 279 ILE P 281 -1 O ILE P 281 N VAL P 252 SHEET 1 J 3 THR P 339 GLY P 343 0 SHEET 2 J 3 GLN P 346 LEU P 351 -1 O ILE P 348 N THR P 341 SHEET 3 J 3 LYS P 379 THR P 384 -1 O LEU P 383 N VAL P 347 SHEET 1 K 5 GLN P 371 VAL P 375 0 SHEET 2 K 5 THR P 357 ASN P 363 -1 N THR P 357 O VAL P 375 SHEET 3 K 5 LEU P 390 TRP P 394 -1 O THR P 393 N SER P 360 SHEET 4 K 5 TYR P 400 PRO P 404 -1 O TYR P 400 N VAL P 392 SHEET 5 K 5 ILE F 387 VAL F 388 -1 O VAL F 388 N TRP P 403 SHEET 1 L 4 TYR F 1 PRO F 8 0 SHEET 2 L 4 ASN F 275 ILE F 282 -1 O ILE F 278 N THR F 5 SHEET 3 L 4 ALA F 159 VAL F 163 -1 N LYS F 160 O ASP F 281 SHEET 4 L 4 ALA F 153 VAL F 156 -1 N VAL F 154 O PHE F 161 SHEET 1 M 5 TYR F 15 VAL F 19 0 SHEET 2 M 5 MET F 27 THR F 48 -1 O MET F 27 N VAL F 19 SHEET 3 M 5 ALA F 119 TYR F 137 -1 O ARG F 134 N GLU F 32 SHEET 4 M 5 LYS F 176 TYR F 180 -1 O ILE F 177 N TYR F 122 SHEET 5 M 5 ASP F 183 ASN F 186 -1 O ASP F 183 N TYR F 180 SHEET 1 N 5 ASN F 140 TYR F 147 0 SHEET 2 N 5 ALA F 119 TYR F 137 -1 N LEU F 133 O VAL F 144 SHEET 3 N 5 MET F 27 THR F 48 -1 N GLU F 32 O ARG F 134 SHEET 4 N 5 ARG F 267 VAL F 269 -1 O ALA F 268 N LEU F 38 SHEET 5 N 5 GLN F 260 ALA F 262 -1 N GLN F 260 O VAL F 269 SHEET 1 O 3 TYR F 51 VAL F 54 0 SHEET 2 O 3 THR F 101 LYS F 110 -1 O HIS F 107 N VAL F 54 SHEET 3 O 3 TYR F 59 LYS F 61 -1 N TYR F 59 O LEU F 103 SHEET 1 P 3 TYR F 51 VAL F 54 0 SHEET 2 P 3 THR F 101 LYS F 110 -1 O HIS F 107 N VAL F 54 SHEET 3 P 3 SER F 77 THR F 82 -1 N SER F 77 O ALA F 106 SHEET 1 Q 2 PHE F 87 MET F 88 0 SHEET 2 Q 2 GLY F 91 ALA F 92 -1 O GLY F 91 N MET F 88 SHEET 1 R 2 ILE F 203 GLN F 204 0 SHEET 2 R 2 TYR F 214 ALA F 215 -1 O TYR F 214 N GLN F 204 SHEET 1 S 2 VAL F 220 LEU F 221 0 SHEET 2 S 2 TYR F 233 SER F 234 -1 O SER F 234 N VAL F 220 SHEET 1 T 4 LEU F 296 CYS F 306 0 SHEET 2 T 4 GLY F 314 ALA F 322 -1 O ILE F 317 N GLU F 302 SHEET 3 T 4 ASN F 349 THR F 358 -1 O LEU F 352 N ILE F 318 SHEET 4 T 4 VAL F 337 ILE F 339 -1 N THR F 338 O SER F 357 SHEET 1 U 4 GLU F 343 VAL F 346 0 SHEET 2 U 4 GLY F 326 SER F 332 -1 N GLY F 326 O VAL F 346 SHEET 3 U 4 SER F 362 VAL F 369 -1 O GLN F 368 N HIS F 331 SHEET 4 U 4 THR F 372 GLU F 379 -1 O CYS F 376 N PHE F 365 SSBOND 1 CYS P 8 CYS P 17 1555 1555 2.04 SSBOND 2 CYS P 22 CYS P 26 1555 1555 2.04 SSBOND 3 CYS P 25 CYS P 57 1555 1555 2.04 SSBOND 4 CYS P 83 CYS P 189 1555 1555 2.04 SSBOND 5 CYS P 86 CYS P 92 1555 1555 2.03 SSBOND 6 CYS P 155 CYS P 169 1555 1555 2.03 SSBOND 7 CYS P 217 CYS P 330 1555 1555 2.03 SSBOND 8 CYS P 265 CYS P 289 1555 1555 2.03 SSBOND 9 CYS P 267 CYS P 284 1555 1555 2.03 SSBOND 10 CYS F 49 CYS F 114 1555 1555 2.03 SSBOND 11 CYS F 62 CYS F 94 1555 1555 2.04 SSBOND 12 CYS F 63 CYS F 96 1555 1555 2.03 SSBOND 13 CYS F 68 CYS F 78 1555 1555 2.04 SSBOND 14 CYS F 259 CYS F 271 1555 1555 2.03 SSBOND 15 CYS F 301 CYS F 376 1555 1555 2.03 SSBOND 16 CYS F 306 CYS F 380 1555 1555 2.03 SSBOND 17 CYS F 328 CYS F 370 1555 1555 2.04 LINK ND2 ASN P 12 C1 NAG A 1 1555 1555 1.45 LINK ND2 ASN P 327 C1 NAG P2001 1555 1555 1.45 LINK ND2 ASN F 141 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG B 1 C1 NDG B 2 1555 1555 1.45 CISPEP 1 THR P 23 PRO P 24 0 0.36 CISPEP 2 GLY F 164 PRO F 165 0 -0.07 CISPEP 3 ASN F 264 PRO F 265 0 0.32 CRYST1 58.740 90.010 179.030 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005586 0.00000 MASTER 436 0 10 5 68 0 0 6 0 0 0 62 END