HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-MAY-10 3MYX TITLE CRYSTAL STRUCTURE OF A PSPTO_0244 (PROTEIN WITH UNKNOWN FUNCTION WHICH TITLE 2 BELONGS TO PFAM DUF861 FAMILY) FROM PSEUDOMONAS SYRINGAE PV. TOMATO TITLE 3 STR. DC3000 AT 1.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN PSPTO_0244; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO; SOURCE 3 ORGANISM_COMMON: TBD; SOURCE 4 ORGANISM_TAXID: 223283; SOURCE 5 STRAIN: DC3000; SOURCE 6 GENE: PSPTO0244, PSPTO_0244; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PROTEIN OF UNKNOWN FUNCTION (DUF861), CUPIN_3 (PF05899), STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 17-JUL-19 3MYX 1 REMARK LINK REVDAT 2 08-NOV-17 3MYX 1 REMARK REVDAT 1 09-JUN-10 3MYX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PSPTO_0244 (PROTEIN WITH UNKNOWN JRNL TITL 2 FUNCTION WHICH BELONGS TO PFAM DUF861 FAMILY) FROM JRNL TITL 3 PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000 AT 1.30 A JRNL TITL 4 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 101735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6082 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 311 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 791 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.296 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4050 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2788 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5607 ; 1.495 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6881 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 7.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;30.822 ;22.911 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 678 ;11.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.832 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4614 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 816 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2557 ; 1.680 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1016 ; 0.971 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4243 ; 2.467 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1493 ; 2.916 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1299 ; 4.030 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6838 ; 1.224 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 832 ; 5.668 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6706 ; 2.739 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.CHLORIDE (CL) AND 1,2-ETHANEDIOL (EDO) FROM THE REMARK 3 CRYSTALLIZATION AND CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED. REMARK 3 4.ELECTRON DENSITY FOR RESIDUES A201-A203 WERE POOR AND THIS REMARK 3 REGION HAS BEEN MODELED BASED ON THE CORRESPONDING PORTION IN REMARK 3 CHAIN B. REMARK 4 REMARK 4 3MYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97913,0.97879 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101752 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.759 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-MERGE, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NH4CL, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.19800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. SIZE- REMARK 300 EXCLUSION CHROMATOGRAPHY COUPLED WITH STATIC LIGHT SCATTERING REMARK 300 SUGGEST A DIMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 43 CD OE1 OE2 REMARK 470 LYS A 184 CD CE NZ REMARK 470 ARG A 195 CZ NH1 NH2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 GLU B 43 CD OE1 OE2 REMARK 470 LYS B 184 CE NZ REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 142 O HOH A 274 2656 2.18 REMARK 500 O HOH A 440 O HOH B 293 2646 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 231 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -85.53 -143.23 REMARK 500 ASP B 33 -99.30 -133.27 REMARK 500 THR B 55 -154.70 -133.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 245 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 403325 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3MYX A 1 237 UNP Q88AY9 Q88AY9_PSESM 1 237 DBREF 3MYX B 1 237 UNP Q88AY9 Q88AY9_PSESM 1 237 SEQADV 3MYX GLY A 0 UNP Q88AY9 LEADER SEQUENCE SEQADV 3MYX GLY B 0 UNP Q88AY9 LEADER SEQUENCE SEQRES 1 A 238 GLY MSE PRO GLN PRO THR VAL LEU LEU LEU ALA ARG ALA SEQRES 2 A 238 ASP LEU SER PRO VAL GLY THR GLU PHE THR THR GLY PRO SEQRES 3 A 238 ILE ASP ALA HIS ASP PRO PHE ASP SER GLY ARG ARG THR SEQRES 4 A 238 ALA PHE VAL ASP GLU GLN GLY ILE ALA ALA GLY ILE VAL SEQRES 5 A 238 GLU PHE GLY THR ALA LEU SER VAL GLU ALA TYR PRO TYR SEQRES 6 A 238 THR GLU MSE LEU VAL MSE HIS ARG GLY SER VAL THR LEU SEQRES 7 A 238 THR SER GLY THR ASP SER VAL THR LEU SER THR GLY GLU SEQRES 8 A 238 SER ALA VAL ILE GLY ARG GLY THR GLN VAL ARG ILE ASP SEQRES 9 A 238 ALA GLN PRO GLU SER LEU TRP ALA PHE CYS ALA SER THR SEQRES 10 A 238 GLN ALA SER GLY PRO ASP LYS SER GLY ILE THR ALA LEU SEQRES 11 A 238 ASP ARG LEU ALA LEU LEU THR PRO SER SER PRO PRO ASP SEQRES 12 A 238 PRO SER ILE MSE ILE SER PRO LEU PRO GLN CYS ARG SER SEQRES 13 A 238 ASN ASN LEU PHE GLU ASP THR ALA SER THR LEU ARG ILE SEQRES 14 A 238 GLY VAL TRP ASP SER THR PRO TYR GLU ARG ILE SER ARG SEQRES 15 A 238 PRO HIS LYS ILE HIS GLU LEU MSE ASN LEU ILE GLU GLY SEQRES 16 A 238 ARG VAL VAL LEU SER LEU GLU ASN GLY SER SER LEU THR SEQRES 17 A 238 VAL ASN THR GLY ASP THR VAL PHE VAL ALA GLN GLY ALA SEQRES 18 A 238 PRO CYS LYS TRP THR SER THR GLY TYR VAL ARG LYS PHE SEQRES 19 A 238 TYR ALA VAL THR SEQRES 1 B 238 GLY MSE PRO GLN PRO THR VAL LEU LEU LEU ALA ARG ALA SEQRES 2 B 238 ASP LEU SER PRO VAL GLY THR GLU PHE THR THR GLY PRO SEQRES 3 B 238 ILE ASP ALA HIS ASP PRO PHE ASP SER GLY ARG ARG THR SEQRES 4 B 238 ALA PHE VAL ASP GLU GLN GLY ILE ALA ALA GLY ILE VAL SEQRES 5 B 238 GLU PHE GLY THR ALA LEU SER VAL GLU ALA TYR PRO TYR SEQRES 6 B 238 THR GLU MSE LEU VAL MSE HIS ARG GLY SER VAL THR LEU SEQRES 7 B 238 THR SER GLY THR ASP SER VAL THR LEU SER THR GLY GLU SEQRES 8 B 238 SER ALA VAL ILE GLY ARG GLY THR GLN VAL ARG ILE ASP SEQRES 9 B 238 ALA GLN PRO GLU SER LEU TRP ALA PHE CYS ALA SER THR SEQRES 10 B 238 GLN ALA SER GLY PRO ASP LYS SER GLY ILE THR ALA LEU SEQRES 11 B 238 ASP ARG LEU ALA LEU LEU THR PRO SER SER PRO PRO ASP SEQRES 12 B 238 PRO SER ILE MSE ILE SER PRO LEU PRO GLN CYS ARG SER SEQRES 13 B 238 ASN ASN LEU PHE GLU ASP THR ALA SER THR LEU ARG ILE SEQRES 14 B 238 GLY VAL TRP ASP SER THR PRO TYR GLU ARG ILE SER ARG SEQRES 15 B 238 PRO HIS LYS ILE HIS GLU LEU MSE ASN LEU ILE GLU GLY SEQRES 16 B 238 ARG VAL VAL LEU SER LEU GLU ASN GLY SER SER LEU THR SEQRES 17 B 238 VAL ASN THR GLY ASP THR VAL PHE VAL ALA GLN GLY ALA SEQRES 18 B 238 PRO CYS LYS TRP THR SER THR GLY TYR VAL ARG LYS PHE SEQRES 19 B 238 TYR ALA VAL THR MODRES 3MYX MSE A 67 MET SELENOMETHIONINE MODRES 3MYX MSE A 70 MET SELENOMETHIONINE MODRES 3MYX MSE A 146 MET SELENOMETHIONINE MODRES 3MYX MSE A 189 MET SELENOMETHIONINE MODRES 3MYX MSE B 67 MET SELENOMETHIONINE MODRES 3MYX MSE B 70 MET SELENOMETHIONINE MODRES 3MYX MSE B 146 MET SELENOMETHIONINE MODRES 3MYX MSE B 189 MET SELENOMETHIONINE HET MSE A 67 13 HET MSE A 70 13 HET MSE A 146 8 HET MSE A 189 13 HET MSE B 67 13 HET MSE B 70 13 HET MSE B 146 8 HET MSE B 189 13 HET CL A 238 1 HET EDO A 239 4 HET EDO A 240 4 HET EDO A 241 4 HET EDO A 242 4 HET CL B 238 1 HET EDO B 239 4 HET EDO B 240 4 HET EDO B 241 8 HET EDO B 242 4 HET EDO B 243 4 HET EDO B 244 4 HET EDO B 245 8 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 EDO 11(C2 H6 O2) FORMUL 16 HOH *791(H2 O) HELIX 1 1 ASP A 142 MSE A 146 5 5 HELIX 2 2 ASP B 142 MSE B 146 5 5 SHEET 1 A 7 VAL A 6 ALA A 10 0 SHEET 2 A 7 THR A 213 VAL A 216 -1 O PHE A 215 N LEU A 7 SHEET 3 A 7 GLU A 187 GLU A 193 -1 N GLU A 187 O VAL A 216 SHEET 4 A 7 VAL A 230 VAL A 236 -1 O PHE A 233 N ASN A 190 SHEET 5 A 7 ARG A 167 SER A 173 -1 N TRP A 171 O LYS A 232 SHEET 6 A 7 CYS A 153 GLU A 160 -1 N PHE A 159 O ILE A 168 SHEET 7 A 7 THR A 136 SER A 138 -1 N THR A 136 O SER A 155 SHEET 1 B 7 THR A 22 THR A 23 0 SHEET 2 B 7 ARG A 36 VAL A 41 -1 O THR A 38 N THR A 22 SHEET 3 B 7 ILE A 46 PHE A 53 -1 O ILE A 50 N ARG A 37 SHEET 4 B 7 SER A 108 SER A 115 -1 O TRP A 110 N VAL A 51 SHEET 5 B 7 THR A 65 ARG A 72 -1 N MSE A 67 O CYS A 113 SHEET 6 B 7 SER A 91 ILE A 94 -1 O ILE A 94 N GLU A 66 SHEET 7 B 7 ILE A 126 LEU A 129 -1 O THR A 127 N VAL A 93 SHEET 1 C 4 ALA A 56 VAL A 59 0 SHEET 2 C 4 VAL A 100 ALA A 104 -1 O VAL A 100 N VAL A 59 SHEET 3 C 4 SER A 74 SER A 79 -1 N THR A 78 O ARG A 101 SHEET 4 C 4 ASP A 82 SER A 87 -1 O VAL A 84 N LEU A 77 SHEET 1 D 3 TYR A 176 GLU A 177 0 SHEET 2 D 3 PRO A 221 SER A 226 -1 O SER A 226 N TYR A 176 SHEET 3 D 3 ARG A 181 PRO A 182 -1 N ARG A 181 O CYS A 222 SHEET 1 E 4 TYR A 176 GLU A 177 0 SHEET 2 E 4 PRO A 221 SER A 226 -1 O SER A 226 N TYR A 176 SHEET 3 E 4 VAL A 196 LEU A 200 -1 N VAL A 197 O THR A 225 SHEET 4 E 4 SER A 205 VAL A 208 -1 O VAL A 208 N VAL A 196 SHEET 1 F 7 VAL B 6 ALA B 10 0 SHEET 2 F 7 THR B 213 VAL B 216 -1 O PHE B 215 N LEU B 7 SHEET 3 F 7 GLU B 187 GLU B 193 -1 N GLU B 187 O VAL B 216 SHEET 4 F 7 VAL B 230 VAL B 236 -1 O ALA B 235 N LEU B 188 SHEET 5 F 7 ARG B 167 SER B 173 -1 N TRP B 171 O LYS B 232 SHEET 6 F 7 CYS B 153 GLU B 160 -1 N PHE B 159 O ILE B 168 SHEET 7 F 7 THR B 136 SER B 138 -1 N THR B 136 O SER B 155 SHEET 1 G 7 THR B 22 THR B 23 0 SHEET 2 G 7 ARG B 36 VAL B 41 -1 O THR B 38 N THR B 22 SHEET 3 G 7 ILE B 46 PHE B 53 -1 O ILE B 50 N ARG B 37 SHEET 4 G 7 SER B 108 SER B 115 -1 O TRP B 110 N VAL B 51 SHEET 5 G 7 THR B 65 ARG B 72 -1 N HIS B 71 O LEU B 109 SHEET 6 G 7 SER B 91 ILE B 94 -1 O ILE B 94 N GLU B 66 SHEET 7 G 7 ILE B 126 LEU B 129 -1 O THR B 127 N VAL B 93 SHEET 1 H 4 ALA B 56 VAL B 59 0 SHEET 2 H 4 VAL B 100 ALA B 104 -1 O ILE B 102 N LEU B 57 SHEET 3 H 4 SER B 74 SER B 79 -1 N THR B 78 O ARG B 101 SHEET 4 H 4 ASP B 82 SER B 87 -1 O VAL B 84 N LEU B 77 SHEET 1 I 4 ARG B 181 PRO B 182 0 SHEET 2 I 4 PRO B 221 THR B 225 -1 O CYS B 222 N ARG B 181 SHEET 3 I 4 VAL B 196 SER B 199 -1 N VAL B 197 O THR B 225 SHEET 4 I 4 SER B 205 VAL B 208 -1 O VAL B 208 N VAL B 196 LINK C GLU A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N LEU A 68 1555 1555 1.33 LINK C VAL A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N HIS A 71 1555 1555 1.33 LINK C ILE A 145 N MSE A 146 1555 1555 1.32 LINK C MSE A 146 N ILE A 147 1555 1555 1.34 LINK C LEU A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ASN A 190 1555 1555 1.32 LINK C GLU B 66 N MSE B 67 1555 1555 1.33 LINK C MSE B 67 N LEU B 68 1555 1555 1.34 LINK C VAL B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N HIS B 71 1555 1555 1.33 LINK C ILE B 145 N MSE B 146 1555 1555 1.33 LINK C MSE B 146 N ILE B 147 1555 1555 1.33 LINK C LEU B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N ASN B 190 1555 1555 1.32 SITE 1 AC1 5 ASP A 33 SER A 34 GLY A 35 HOH A 421 SITE 2 AC1 5 HOH A 473 SITE 1 AC2 5 SER A 79 GLY A 80 GLN A 99 ARG A 101 SITE 2 AC2 5 HOH A 254 SITE 1 AC3 4 GLN A 44 SER A 164 THR A 165 HOH A 458 SITE 1 AC4 6 PRO A 141 TRP A 171 HOH A 351 HOH A 380 SITE 2 AC4 6 HOH A 563 HOH A 756 SITE 1 AC5 6 PRO A 175 THR A 227 HOH A 416 LEU B 132 SITE 2 AC5 6 EDO B 239 EDO B 240 SITE 1 AC6 2 ASP B 33 GLY B 35 SITE 1 AC7 6 EDO A 242 ARG B 131 LEU B 132 EDO B 240 SITE 2 AC7 6 HOH B 359 HOH B 442 SITE 1 AC8 7 THR A 227 EDO A 242 ARG B 131 EDO B 239 SITE 2 AC8 7 EDO B 241 HOH B 348 HOH B 393 SITE 1 AC9 7 THR A 227 GLY A 228 HOH A 347 HOH A 720 SITE 2 AC9 7 GLU B 193 EDO B 240 HOH B 417 SITE 1 BC1 7 SER B 139 PRO B 140 PRO B 141 TRP B 171 SITE 2 BC1 7 TYR B 176 EDO B 245 HOH B 719 SITE 1 BC2 6 THR B 78 SER B 79 GLY B 80 GLN B 99 SITE 2 BC2 6 ARG B 101 HOH B 255 SITE 1 BC3 6 GLU B 20 PHE B 21 THR B 22 THR B 38 SITE 2 BC3 6 ALA B 39 HOH B 360 SITE 1 BC4 10 SER B 155 ARG B 167 TRP B 171 GLU B 187 SITE 2 BC4 10 LYS B 232 TYR B 234 EDO B 242 HOH B 337 SITE 3 BC4 10 HOH B 421 HOH B 624 CRYST1 57.584 48.396 80.454 90.00 108.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017366 0.000000 0.005713 0.00000 SCALE2 0.000000 0.020663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013085 0.00000 MASTER 399 0 21 2 47 0 25 6 0 0 0 38 END