HEADER TRANSFERASE 19-APR-10 3MM4 TITLE CRYSTAL STRUCTURE OF THE RECEIVER DOMAIN OF THE HISTIDINE KINASE CKI1 TITLE 2 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEIVER DOMAIN (UNP RESIDUES 944-1122); COMPND 5 SYNONYM: HISTIDINE KINASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CKI1, AT2G47430; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS RECEIVER DOMAIN, CKI1, ARABIDOPSIS, CYTOKININ SIGNALING, ROSSMANN- KEYWDS 2 FOLD, CHEY-LIKE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MAREK,T.KLUMPLER,B.PEKAROVA,O.TRISKOVA,J.HORAK,L.ZIDEK,R.DOPITOVA, AUTHOR 2 J.HEJATKO,L.JANDA REVDAT 3 14-SEP-11 3MM4 1 JRNL VERSN REVDAT 2 01-JUN-11 3MM4 1 JRNL REVDAT 1 13-APR-11 3MM4 0 JRNL AUTH B.PEKAROVA,T.KLUMPLER,O.TRISKOVA,J.HORAK,S.JANSEN, JRNL AUTH 2 R.DOPITOVA,P.BORKOVCOVA,V.PAPOUSKOVA,E.NEJEDLA,V.SKLENAR, JRNL AUTH 3 J.MAREK,L.ZIDEK,J.HEJATKO,L.JANDA JRNL TITL STRUCTURE AND BINDING SPECIFICITY OF THE RECEIVER DOMAIN OF JRNL TITL 2 SENSOR HISTIDINE KINASE CKI1 FROM ARABIDOPSIS THALIANA. JRNL REF PLANT J. V. 67 827 2011 JRNL REFN ISSN 0960-7412 JRNL PMID 21569135 JRNL DOI 10.1111/J.1365-313X.2011.04637.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.KLUMPLER,B.PEKAROVA,J.MAREK,P.BORKOVCOVA,L.JANDA,J.HEJATKO REMARK 1 TITL CLONING, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 ANALYSIS OF THE RECEIVER DOMAIN OF THE HISTIDINE KINASE CKI1 REMARK 1 TITL 3 FROM ARABIDOPSIS THALIANA. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 478 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19407381 REMARK 1 DOI 10.1107/S1744309109012032 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 871 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.1920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.106 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1173 ; 0.033 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1571 ; 2.254 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;37.616 ;24.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 238 ;15.213 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.094 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 177 ; 0.210 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 864 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 719 ; 1.692 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1165 ; 2.810 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 454 ; 4.592 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 406 ; 7.671 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-10. REMARK 100 THE RCSB ID CODE IS RCSB058716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.05 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8423 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 5.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 11.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: PDB ENTRY 1AB5 (CHEY) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 2.54M AMMONIUM SULFATE, PH REMARK 280 5.05, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.97150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.97150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.22900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.91250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.22900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.91250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.97150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.22900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.91250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.97150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.22900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.91250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 925 REMARK 465 SER A 926 REMARK 465 SER A 927 REMARK 465 HIS A 928 REMARK 465 HIS A 929 REMARK 465 HIS A 930 REMARK 465 HIS A 931 REMARK 465 HIS A 932 REMARK 465 HIS A 933 REMARK 465 SER A 934 REMARK 465 ARG A 940 REMARK 465 GLY A 941 REMARK 465 SER A 942 REMARK 465 HIS A 943 REMARK 465 MET A 944 REMARK 465 ALA A 945 REMARK 465 SER A 946 REMARK 465 THR A 947 REMARK 465 ASP A 948 REMARK 465 SER A 949 REMARK 465 GLU A 950 REMARK 465 SER A 951 REMARK 465 GLU A 952 REMARK 465 THR A 953 REMARK 465 ARG A 954 REMARK 465 VAL A 955 REMARK 465 LYS A 956 REMARK 465 SER A 957 REMARK 465 VAL A 958 REMARK 465 ARG A 959 REMARK 465 THR A 960 REMARK 465 GLY A 961 REMARK 465 ARG A 962 REMARK 465 LYS A 963 REMARK 465 PRO A 964 REMARK 465 ILE A 965 REMARK 465 GLY A 966 REMARK 465 ASN A 967 REMARK 465 PRO A 968 REMARK 465 GLU A 969 REMARK 465 ASP A 970 REMARK 465 GLU A 971 REMARK 465 GLN A 972 REMARK 465 GLU A 973 REMARK 465 THR A 974 REMARK 465 SER A 975 REMARK 465 LYS A 976 REMARK 465 PRO A 977 REMARK 465 SER A 978 REMARK 465 SER A 1119 REMARK 465 LYS A 1120 REMARK 465 ARG A 1121 REMARK 465 HIS A 1122 REMARK 465 LEU A 1123 REMARK 465 GLU A 1124 REMARK 465 HIS A 1125 REMARK 465 HIS A 1126 REMARK 465 HIS A 1127 REMARK 465 HIS A 1128 REMARK 465 HIS A 1129 REMARK 465 HIS A 1130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 1038 NZ LYS A 1041 1.99 REMARK 500 OD1 ASP A 979 O HOH A 112 2.15 REMARK 500 O HOH A 34 O HOH A 64 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A1029 N GLY A1029 CA 0.093 REMARK 500 GLU A1064 CG GLU A1064 CD 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 979 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 979 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 PRO A1043 C - N - CA ANGL. DEV. = -10.6 DEGREES REMARK 500 ASP A1057 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1055 -115.92 63.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 935 GLY A 936 149.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 979 11.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 79 DISTANCE = 5.25 ANGSTROMS DBREF 3MM4 A 944 1122 UNP O22267 O22267_ARATH 944 1122 SEQADV 3MM4 GLY A 925 UNP O22267 EXPRESSION TAG SEQADV 3MM4 SER A 926 UNP O22267 EXPRESSION TAG SEQADV 3MM4 SER A 927 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 928 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 929 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 930 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 931 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 932 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 933 UNP O22267 EXPRESSION TAG SEQADV 3MM4 SER A 934 UNP O22267 EXPRESSION TAG SEQADV 3MM4 SER A 935 UNP O22267 EXPRESSION TAG SEQADV 3MM4 GLY A 936 UNP O22267 EXPRESSION TAG SEQADV 3MM4 LEU A 937 UNP O22267 EXPRESSION TAG SEQADV 3MM4 VAL A 938 UNP O22267 EXPRESSION TAG SEQADV 3MM4 PRO A 939 UNP O22267 EXPRESSION TAG SEQADV 3MM4 ARG A 940 UNP O22267 EXPRESSION TAG SEQADV 3MM4 GLY A 941 UNP O22267 EXPRESSION TAG SEQADV 3MM4 SER A 942 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 943 UNP O22267 EXPRESSION TAG SEQADV 3MM4 LEU A 1123 UNP O22267 EXPRESSION TAG SEQADV 3MM4 GLU A 1124 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 1125 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 1126 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 1127 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 1128 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 1129 UNP O22267 EXPRESSION TAG SEQADV 3MM4 HIS A 1130 UNP O22267 EXPRESSION TAG SEQRES 1 A 206 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 206 VAL PRO ARG GLY SER HIS MET ALA SER THR ASP SER GLU SEQRES 3 A 206 SER GLU THR ARG VAL LYS SER VAL ARG THR GLY ARG LYS SEQRES 4 A 206 PRO ILE GLY ASN PRO GLU ASP GLU GLN GLU THR SER LYS SEQRES 5 A 206 PRO SER ASP ASP GLU PHE LEU ARG GLY LYS ARG VAL LEU SEQRES 6 A 206 VAL VAL ASP ASP ASN PHE ILE SER ARG LYS VAL ALA THR SEQRES 7 A 206 GLY LYS LEU LYS LYS MET GLY VAL SER GLU VAL GLU GLN SEQRES 8 A 206 CYS ASP SER GLY LYS GLU ALA LEU ARG LEU VAL THR GLU SEQRES 9 A 206 GLY LEU THR GLN ARG GLU GLU GLN GLY SER VAL ASP LYS SEQRES 10 A 206 LEU PRO PHE ASP TYR ILE PHE MET ASP CYS GLN MET PRO SEQRES 11 A 206 GLU MET ASP GLY TYR GLU ALA THR ARG GLU ILE ARG LYS SEQRES 12 A 206 VAL GLU LYS SER TYR GLY VAL ARG THR PRO ILE ILE ALA SEQRES 13 A 206 VAL SER GLY HIS ASP PRO GLY SER GLU GLU ALA ARG GLU SEQRES 14 A 206 THR ILE GLN ALA GLY MET ASP ALA PHE LEU ASP LYS SER SEQRES 15 A 206 LEU ASN GLN LEU ALA ASN VAL ILE ARG GLU ILE GLU SER SEQRES 16 A 206 LYS ARG HIS LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *132(H2 O) HELIX 1 1 ASN A 994 MET A 1008 1 15 HELIX 2 2 SER A 1018 GLY A 1037 1 20 HELIX 3 3 ASP A 1057 SER A 1071 1 15 HELIX 4 4 GLY A 1087 GLY A 1098 1 12 HELIX 5 5 GLN A 1109 GLU A 1118 1 10 SHEET 1 A 6 GLY A 936 LEU A 937 0 SHEET 2 A 6 ALA A1101 ASP A1104 -1 O PHE A1102 N GLY A 936 SHEET 3 A 6 ILE A1078 SER A1082 1 N ALA A1080 O ALA A1101 SHEET 4 A 6 TYR A1046 ASP A1050 1 N ILE A1047 O ILE A1079 SHEET 5 A 6 ARG A 987 VAL A 991 1 N VAL A 991 O PHE A1048 SHEET 6 A 6 GLU A1012 CYS A1016 1 O GLU A1014 N VAL A 988 CRYST1 54.458 99.825 79.943 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018363 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012509 0.00000 MASTER 437 0 0 5 6 0 0 6 0 0 0 16 END