HEADER TRANSPORT PROTEIN 06-APR-10 3MGL TITLE CRYSTAL STRUCTURE OF PERMEASE FAMILY PROTEIN FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFATE PERMEASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC_A0077; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS PSI2, MCSG, STRUCTURAL GENOMICS, SULFATE PERMEASE FAMILY PROTEIN, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,N.MARSHALL,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 08-NOV-17 3MGL 1 REMARK REVDAT 1 21-APR-10 3MGL 0 JRNL AUTH C.CHANG,N.MARSHALL,J.BEARDEN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PERMEASE FAMILY PROTEIN FROM VIBRIO JRNL TITL 2 CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 13300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 868 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.1480 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1975 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.864 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2023 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2734 ; 1.278 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 5.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.620 ;23.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;15.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1495 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 0.782 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2036 ; 1.437 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 757 ; 2.665 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 698 ; 4.348 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2023 ; 1.268 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 423 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7685 64.4621 28.5450 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.0817 REMARK 3 T33: 0.1236 T12: 0.0290 REMARK 3 T13: -0.0386 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 8.1889 L22: 4.1071 REMARK 3 L33: 14.4178 L12: 1.7726 REMARK 3 L13: -1.0699 L23: -5.7499 REMARK 3 S TENSOR REMARK 3 S11: 0.2962 S12: -0.3038 S13: -0.1219 REMARK 3 S21: 0.3997 S22: -0.2542 S23: -0.2872 REMARK 3 S31: -0.6164 S32: 0.0970 S33: -0.0420 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 441 A 534 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4654 73.8386 17.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0507 REMARK 3 T33: 0.0468 T12: -0.0188 REMARK 3 T13: -0.0103 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.9781 L22: 3.4240 REMARK 3 L33: 1.8111 L12: -0.3515 REMARK 3 L13: -0.0111 L23: 0.8289 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: 0.0728 S13: 0.1401 REMARK 3 S21: -0.2024 S22: 0.0552 S23: 0.1287 REMARK 3 S31: -0.0152 S32: -0.0864 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 535 A 550 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3467 61.1023 24.4344 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1312 REMARK 3 T33: 0.1187 T12: -0.0092 REMARK 3 T13: -0.0050 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 15.9196 L22: 16.7917 REMARK 3 L33: 12.3032 L12: -7.9156 REMARK 3 L13: -4.8583 L23: 6.8991 REMARK 3 S TENSOR REMARK 3 S11: -0.1672 S12: -0.0685 S13: -0.4445 REMARK 3 S21: 0.5019 S22: 0.2777 S23: -0.6389 REMARK 3 S31: 0.9299 S32: -0.0995 S33: -0.1105 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 423 B 440 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5214 64.1290 42.3529 REMARK 3 T TENSOR REMARK 3 T11: 0.1603 T22: 0.0658 REMARK 3 T33: 0.0895 T12: -0.0528 REMARK 3 T13: 0.0306 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 6.0414 L22: 5.9532 REMARK 3 L33: 19.7279 L12: -2.2344 REMARK 3 L13: -0.5941 L23: 4.0135 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: 0.0113 S13: -0.1370 REMARK 3 S21: -0.1879 S22: -0.1703 S23: 0.1571 REMARK 3 S31: 0.0953 S32: 0.0622 S33: 0.0869 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 441 B 534 REMARK 3 ORIGIN FOR THE GROUP (A): 53.2726 73.8472 53.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0467 REMARK 3 T33: 0.0322 T12: 0.0225 REMARK 3 T13: 0.0027 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.8771 L22: 3.4495 REMARK 3 L33: 2.7679 L12: 1.3359 REMARK 3 L13: -0.4601 L23: -0.9759 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.0811 S13: 0.0629 REMARK 3 S21: 0.1937 S22: 0.0525 S23: -0.1059 REMARK 3 S31: -0.0543 S32: 0.0503 S33: 0.0382 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 535 B 550 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7886 61.0446 46.2037 REMARK 3 T TENSOR REMARK 3 T11: 0.2410 T22: 0.1828 REMARK 3 T33: 0.1720 T12: -0.0078 REMARK 3 T13: 0.0376 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 17.6424 L22: 11.8326 REMARK 3 L33: 12.2228 L12: 7.2799 REMARK 3 L13: -6.5400 L23: -3.0919 REMARK 3 S TENSOR REMARK 3 S11: -0.4214 S12: 0.1321 S13: -0.7096 REMARK 3 S21: 0.2031 S22: 0.3738 S23: 0.3084 REMARK 3 S31: 0.7656 S32: -0.2436 S33: 0.0477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 63.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM IODIDE, 20% PEG3350, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.45700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.45700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.45700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.45700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.45700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.45700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.45700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.45700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: OCTAMER WITH OPERATOR (X,Y,Z), (Y-1/2,-X+3/2,Z), (-Y+3/2,X+ REMARK 300 1/2,Z), (-X+1,-Y+2,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.91400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 181.82800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 136.37100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 45.45700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -45.45700 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 136.37100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 422 REMARK 465 PRO A 551 REMARK 465 SER B 422 REMARK 465 ASN B 423 REMARK 465 ALA B 424 REMARK 465 PRO B 551 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 423 CG OD1 ND2 REMARK 470 GLN A 550 CG CD OE1 NE2 REMARK 470 SER B 427 OG REMARK 470 GLU B 448 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 I IOD A 607 O HOH A 68 3655 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 451 64.22 -110.95 REMARK 500 GLU B 448 -70.74 -52.26 REMARK 500 PHE B 451 65.71 -113.05 REMARK 500 ASN B 511 -179.11 -64.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC36741.1 RELATED DB: TARGETDB DBREF 3MGL A 425 551 UNP Q9KN88 Q9KN88_VIBCH 425 551 DBREF 3MGL B 425 551 UNP Q9KN88 Q9KN88_VIBCH 425 551 SEQADV 3MGL SER A 422 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL ASN A 423 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL ALA A 424 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL SER B 422 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL ASN B 423 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL ALA B 424 UNP Q9KN88 EXPRESSION TAG SEQRES 1 A 130 SER ASN ALA GLU MSE SER TYR GLU LEU ALA GLN HIS GLY SEQRES 2 A 130 ARG SER THR LEU PRO ARG GLU LEU ALA VAL TYR ALA LEU SEQRES 3 A 130 GLU GLY PRO PHE PHE PHE ALA ALA ALA GLU THR PHE GLU SEQRES 4 A 130 ARG VAL MSE GLY SER ILE GLN GLU THR PRO GLN ILE LEU SEQRES 5 A 130 ILE LEU ARG LEU LYS TRP VAL PRO PHE MSE ASP ILE THR SEQRES 6 A 130 GLY ILE GLN THR LEU GLU GLU MSE ILE GLN SER PHE HIS SEQRES 7 A 130 LYS ARG GLY ILE LYS VAL LEU ILE SER GLY ALA ASN SER SEQRES 8 A 130 ARG VAL SER GLN LYS LEU VAL LYS ALA GLY ILE VAL LYS SEQRES 9 A 130 LEU VAL GLY GLU GLN ASN VAL TYR PRO VAL PHE GLU GLY SEQRES 10 A 130 ALA LEU SER ALA ALA LEU THR GLU ILE GLU ALA GLN PRO SEQRES 1 B 130 SER ASN ALA GLU MSE SER TYR GLU LEU ALA GLN HIS GLY SEQRES 2 B 130 ARG SER THR LEU PRO ARG GLU LEU ALA VAL TYR ALA LEU SEQRES 3 B 130 GLU GLY PRO PHE PHE PHE ALA ALA ALA GLU THR PHE GLU SEQRES 4 B 130 ARG VAL MSE GLY SER ILE GLN GLU THR PRO GLN ILE LEU SEQRES 5 B 130 ILE LEU ARG LEU LYS TRP VAL PRO PHE MSE ASP ILE THR SEQRES 6 B 130 GLY ILE GLN THR LEU GLU GLU MSE ILE GLN SER PHE HIS SEQRES 7 B 130 LYS ARG GLY ILE LYS VAL LEU ILE SER GLY ALA ASN SER SEQRES 8 B 130 ARG VAL SER GLN LYS LEU VAL LYS ALA GLY ILE VAL LYS SEQRES 9 B 130 LEU VAL GLY GLU GLN ASN VAL TYR PRO VAL PHE GLU GLY SEQRES 10 B 130 ALA LEU SER ALA ALA LEU THR GLU ILE GLU ALA GLN PRO MODRES 3MGL MSE A 426 MET SELENOMETHIONINE MODRES 3MGL MSE A 463 MET SELENOMETHIONINE MODRES 3MGL MSE A 483 MET SELENOMETHIONINE MODRES 3MGL MSE A 494 MET SELENOMETHIONINE MODRES 3MGL MSE B 426 MET SELENOMETHIONINE MODRES 3MGL MSE B 463 MET SELENOMETHIONINE MODRES 3MGL MSE B 483 MET SELENOMETHIONINE MODRES 3MGL MSE B 494 MET SELENOMETHIONINE HET MSE A 426 8 HET MSE A 463 8 HET MSE A 483 8 HET MSE A 494 8 HET MSE B 426 8 HET MSE B 463 8 HET MSE B 483 8 HET MSE B 494 8 HET IOD A 602 1 HET IOD A 603 1 HET IOD A 604 1 HET IOD A 605 1 HET IOD A 607 1 HET IOD A 552 1 HET IOD B 601 1 HET IOD B 602 1 HET IOD B 603 1 HET IOD B 604 1 HET IOD B 606 1 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 IOD 11(I 1-) FORMUL 14 HOH *68(H2 O) HELIX 1 1 ASN A 423 HIS A 433 1 11 HELIX 2 2 PHE A 452 ILE A 466 1 15 HELIX 3 3 ASP A 484 ARG A 501 1 18 HELIX 4 4 ASN A 511 ALA A 521 1 11 HELIX 5 5 GLY A 522 GLY A 528 1 7 HELIX 6 6 VAL A 535 GLN A 550 1 16 HELIX 7 7 GLU B 425 HIS B 433 1 9 HELIX 8 8 PHE B 452 ILE B 466 1 15 HELIX 9 9 ASP B 484 ARG B 501 1 18 HELIX 10 10 ASN B 511 ALA B 521 1 11 HELIX 11 11 GLY B 522 GLY B 528 1 7 HELIX 12 12 VAL B 535 ALA B 549 1 15 SHEET 1 A 4 LEU A 442 GLU A 448 0 SHEET 2 A 4 ILE A 472 TRP A 479 1 O ILE A 474 N TYR A 445 SHEET 3 A 4 LYS A 504 SER A 508 1 O LEU A 506 N LEU A 475 SHEET 4 A 4 VAL A 532 TYR A 533 1 O TYR A 533 N ILE A 507 SHEET 1 B 4 LEU B 442 ALA B 446 0 SHEET 2 B 4 ILE B 472 ARG B 476 1 O ARG B 476 N TYR B 445 SHEET 3 B 4 LYS B 504 SER B 508 1 O LEU B 506 N LEU B 473 SHEET 4 B 4 VAL B 532 TYR B 533 1 O TYR B 533 N ILE B 507 LINK C GLU A 425 N MSE A 426 1555 1555 1.33 LINK C MSE A 426 N SER A 427 1555 1555 1.32 LINK C VAL A 462 N MSE A 463 1555 1555 1.33 LINK C MSE A 463 N GLY A 464 1555 1555 1.33 LINK C PHE A 482 N MSE A 483 1555 1555 1.33 LINK C MSE A 483 N ASP A 484 1555 1555 1.32 LINK C GLU A 493 N MSE A 494 1555 1555 1.33 LINK C MSE A 494 N ILE A 495 1555 1555 1.33 LINK C GLU B 425 N MSE B 426 1555 1555 1.32 LINK C VAL B 462 N MSE B 463 1555 1555 1.33 LINK C MSE B 463 N GLY B 464 1555 1555 1.33 LINK C PHE B 482 N MSE B 483 1555 1555 1.33 LINK C MSE B 483 N ASP B 484 1555 1555 1.32 LINK C GLU B 493 N MSE B 494 1555 1555 1.33 LINK C MSE B 494 N ILE B 495 1555 1555 1.33 LINK C MSE B 426 N SER B 427 1555 1555 1.34 SITE 1 AC1 4 HOH A 11 ARG A 476 LYS A 478 SER A 508 SITE 1 AC2 2 MSE A 483 LYS A 517 SITE 1 AC3 1 PRO A 534 SITE 1 AC4 1 PHE A 451 SITE 1 AC5 2 HOH A 68 LYS A 517 SITE 1 AC6 2 LYS A 525 GLN B 516 SITE 1 AC7 3 MSE B 483 ARG B 513 LYS B 517 SITE 1 AC8 2 PRO B 534 GLY B 538 SITE 1 AC9 5 HOH B 59 ARG B 476 LYS B 478 SER B 508 SITE 2 AC9 5 GLY B 509 SITE 1 BC1 1 PHE B 451 CRYST1 90.914 90.914 65.210 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015335 0.00000 MASTER 480 0 19 12 8 0 11 6 0 0 0 20 END