HEADER TRANSFERASE 29-MAR-10 3MCQ TITLE CRYSTAL STRUCTURE OF THIAMINE-MONOPHOSPHATE KINASE (MFLA_0573) FROM TITLE 2 METHYLOBACILLUS FLAGELLATUS KT AT 1.91 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE-MONOPHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.4.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 STRAIN: KT / ATCC 51484 / DSM 6875; SOURCE 5 GENE: MFLA_0573; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 17-JUL-19 3MCQ 1 REMARK LINK REVDAT 3 25-OCT-17 3MCQ 1 REMARK REVDAT 2 13-JUL-11 3MCQ 1 VERSN REVDAT 1 19-MAY-10 3MCQ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF THIAMINE-MONOPHOSPHATE KINASE JRNL TITL 2 (MFLA_0573) FROM METHYLOBACILLUS FLAGELLATUS KT AT 1.91 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1315 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2452 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1649 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3339 ; 1.525 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4066 ; 1.251 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 6.231 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;37.950 ;24.747 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;12.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2735 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 452 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 0.667 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 628 ; 0.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2493 ; 1.196 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 904 ; 2.185 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 3.574 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6670 -1.0280 45.8220 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.0501 REMARK 3 T33: 0.0298 T12: 0.0050 REMARK 3 T13: 0.0108 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.7776 L22: 0.8958 REMARK 3 L33: 2.6792 L12: -0.0211 REMARK 3 L13: 0.1246 L23: -0.5245 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0870 S13: -0.0640 REMARK 3 S21: -0.0878 S22: 0.0321 S23: -0.0440 REMARK 3 S31: 0.1434 S32: 0.0408 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4570 23.4450 38.6730 REMARK 3 T TENSOR REMARK 3 T11: 0.5878 T22: 0.0787 REMARK 3 T33: 0.0458 T12: -0.0394 REMARK 3 T13: -0.0369 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.1340 L22: 1.9847 REMARK 3 L33: 3.5946 L12: -0.7297 REMARK 3 L13: 1.6772 L23: -1.5252 REMARK 3 S TENSOR REMARK 3 S11: -0.3625 S12: 0.0476 S13: 0.1616 REMARK 3 S21: 0.5719 S22: 0.1521 S23: -0.1248 REMARK 3 S31: -1.0186 S32: 0.0990 S33: 0.2104 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5440 37.9870 42.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.9966 T22: 0.2691 REMARK 3 T33: 0.6446 T12: 0.1308 REMARK 3 T13: -0.1922 T23: 0.1099 REMARK 3 L TENSOR REMARK 3 L11: 10.2114 L22: 0.1541 REMARK 3 L33: 35.9984 L12: -0.6837 REMARK 3 L13: 9.7586 L23: 0.8209 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: -0.7456 S13: 1.3705 REMARK 3 S21: -0.0853 S22: 0.0973 S23: -0.0636 REMARK 3 S31: -0.8907 S32: -1.2125 S33: 0.0035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 POLYETHYLENE GLYCOL (PEG, PGE, PG4, AND 1PE) FROM THE REMARK 3 CRYSTALLIZATION SOLUTION HAS BEEN MODELED INTO THE SOLVENT REMARK 3 STRUCTURE. 5. SODIUM IONS (NA) FROM THE PROTEIN BUFFER HAVE BEEN REMARK 3 MODELED INTO THE SOLVENT STRUCTURE. 6. TLS GROUPS WERE ASSIGNED REMARK 3 WITH THE AID OF THE TLSMD SERVER. REMARK 4 REMARK 4 3MCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97951,0.97936 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 29.117 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0000% POLYETHYLENE GLYCOL 3000, REMARK 280 44.0000% POLYETHYLENE GLYCOL 400, 0.1M MES PH 6.5, NANODROP', REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.25533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.51067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 106.51067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.25533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY PROVIDES REMARK 300 SUPPORTING EVIDENCE THAT A DIMER IS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.51067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 PHE A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 309 REMARK 465 LYS A 310 REMARK 465 GLU A 311 REMARK 465 HIS A 312 REMARK 465 GLY A 313 REMARK 465 PHE A 314 REMARK 465 ASP A 315 REMARK 465 HIS A 316 REMARK 465 PHE A 317 REMARK 465 ALA A 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 7 CG CD1 CD2 REMARK 470 GLU A 221 CD OE1 OE2 REMARK 470 GLN A 224 OE1 NE2 REMARK 470 LYS A 232 CD CE NZ REMARK 470 GLN A 280 CD OE1 NE2 REMARK 470 ARG A 290 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 71.83 -156.18 REMARK 500 ARG A 80 -34.89 -131.14 REMARK 500 SER A 255 26.31 -146.08 REMARK 500 ASP A 284 77.58 -113.09 REMARK 500 GLN A 295 48.20 -86.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 323 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 319 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 357 O REMARK 620 2 1PE A 328 OH2 90.1 REMARK 620 3 1PE A 328 OH5 85.3 167.9 REMARK 620 4 1PE A 328 OH3 91.4 68.1 123.1 REMARK 620 5 1PE A 328 OH4 92.3 129.3 62.3 61.2 REMARK 620 6 1PE A 328 OH6 91.6 102.3 66.7 170.0 128.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 320 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PG4 A 327 O1 REMARK 620 2 HOH A 400 O 114.1 REMARK 620 3 PG4 A 327 O3 116.5 97.7 REMARK 620 4 PG4 A 327 O2 60.2 129.4 57.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 328 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394140 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT (1-318) WAS EXPRESSED WITH THE PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3MCQ A 1 318 UNP Q1H3U4 Q1H3U4_METFK 1 318 SEQADV 3MCQ GLY A 0 UNP Q1H3U4 LEADER SEQUENCE SEQRES 1 A 319 GLY MSE ALA SER GLU PHE ASP LEU ILE GLN ARG TYR PHE SEQRES 2 A 319 ARG ARG ALA HIS PRO SER ALA VAL LEU GLY VAL GLY ASP SEQRES 3 A 319 ASP ALA ALA LEU ILE GLN PRO SER PRO GLY MSE GLU LEU SEQRES 4 A 319 ALA VAL SER ALA ASP MSE LEU VAL ALA ASN THR HIS PHE SEQRES 5 A 319 TYR PRO ASN ILE ASP PRO TRP LEU ILE GLY TRP LYS SER SEQRES 6 A 319 LEU ALA VAL ASN ILE SER ASP MSE ALA ALA MSE GLY ALA SEQRES 7 A 319 GLN PRO ARG TRP ALA THR LEU THR ILE ALA LEU PRO GLU SEQRES 8 A 319 ALA ASP GLU ASP TRP ILE SER LYS PHE ALA ALA GLY PHE SEQRES 9 A 319 PHE ALA CYS ALA ALA GLN PHE ASP ILE ALA LEU ILE GLY SEQRES 10 A 319 GLY ASP THR THR ARG GLY PRO LEU THR ILE SER VAL GLN SEQRES 11 A 319 ILE MSE GLY GLU THR PRO PRO GLY ALA SER LEU LEU ARG SEQRES 12 A 319 SER THR ALA ARG ALA ASP ASP ASP ILE TRP VAL SER GLY SEQRES 13 A 319 PRO LEU GLY ASP ALA ALA LEU ALA LEU ALA ALA ILE GLN SEQRES 14 A 319 GLY ARG TYR PRO LEU SER ASP THR GLU LEU ALA ALA CYS SEQRES 15 A 319 GLY LYS ALA LEU HIS GLN PRO GLN PRO ARG VAL VAL LEU SEQRES 16 A 319 GLY GLN ALA LEU ARG GLY LEU ALA HIS SER ALA LEU ASP SEQRES 17 A 319 ILE SER ASP GLY LEU LEU ALA ASP LEU GLY HIS ILE LEU SEQRES 18 A 319 GLU HIS SER GLN VAL GLY ALA GLU VAL TRP LEU LYS ALA SEQRES 19 A 319 ILE PRO LYS SER GLU VAL VAL SER ALA HIS SER GLN GLU SEQRES 20 A 319 VAL ALA ILE GLN LYS MSE ILE LEU SER GLY GLY ASP ASP SEQRES 21 A 319 TYR GLU LEU CYS PHE THR ALA SER THR GLN HIS ARG GLN SEQRES 22 A 319 GLN ILE ALA ASP ILE GLY ARG GLN LEU SER LEU ASP MSE SEQRES 23 A 319 ALA VAL ILE GLY ARG ILE THR ASP THR GLN GLN LEU VAL SEQRES 24 A 319 ILE HIS GLY LEU ASP ASP ALA PRO LEU THR LEU LYS GLU SEQRES 25 A 319 HIS GLY PHE ASP HIS PHE ALA MODRES 3MCQ MSE A 36 MET SELENOMETHIONINE MODRES 3MCQ MSE A 44 MET SELENOMETHIONINE MODRES 3MCQ MSE A 72 MET SELENOMETHIONINE MODRES 3MCQ MSE A 75 MET SELENOMETHIONINE MODRES 3MCQ MSE A 131 MET SELENOMETHIONINE MODRES 3MCQ MSE A 252 MET SELENOMETHIONINE MODRES 3MCQ MSE A 285 MET SELENOMETHIONINE HET MSE A 36 8 HET MSE A 44 13 HET MSE A 72 8 HET MSE A 75 8 HET MSE A 131 8 HET MSE A 252 8 HET MSE A 285 8 HET NA A 319 1 HET NA A 320 1 HET PEG A 321 7 HET PEG A 322 7 HET PEG A 323 6 HET PEG A 324 7 HET PGE A 325 10 HET PGE A 326 10 HET PG4 A 327 13 HET 1PE A 328 16 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 NA 2(NA 1+) FORMUL 4 PEG 4(C4 H10 O3) FORMUL 8 PGE 2(C6 H14 O4) FORMUL 10 PG4 C8 H18 O5 FORMUL 11 1PE C10 H22 O6 FORMUL 12 HOH *136(H2 O) HELIX 1 1 GLY A 24 LEU A 29 5 6 HELIX 2 2 ASP A 56 MSE A 75 1 20 HELIX 3 3 ASP A 92 PHE A 110 1 19 HELIX 4 4 GLY A 158 GLN A 168 1 11 HELIX 5 5 SER A 174 GLN A 187 1 14 HELIX 6 6 ARG A 191 LEU A 198 1 8 HELIX 7 7 GLY A 211 GLN A 224 1 14 HELIX 8 8 LYS A 232 ILE A 234 5 3 HELIX 9 9 SER A 237 HIS A 243 1 7 HELIX 10 10 GLU A 246 GLY A 256 1 11 HELIX 11 11 HIS A 270 LEU A 281 1 12 SHEET 1 A 5 HIS A 16 PRO A 17 0 SHEET 2 A 5 ALA A 113 ARG A 121 -1 O THR A 119 N HIS A 16 SHEET 3 A 5 GLN A 78 LEU A 88 1 N ALA A 82 O ILE A 115 SHEET 4 A 5 THR A 125 THR A 134 -1 O SER A 127 N THR A 85 SHEET 5 A 5 GLU A 37 VAL A 46 -1 N SER A 41 O ILE A 130 SHEET 1 B 7 ALA A 202 ASP A 207 0 SHEET 2 B 7 LEU A 262 SER A 267 -1 O CYS A 263 N LEU A 206 SHEET 3 B 7 ASP A 149 VAL A 153 -1 N TRP A 152 O PHE A 264 SHEET 4 B 7 ALA A 286 THR A 292 -1 O ILE A 288 N ILE A 151 SHEET 5 B 7 GLY A 226 TRP A 230 -1 N GLY A 226 O THR A 292 SHEET 6 B 7 LEU A 297 HIS A 300 1 O HIS A 300 N VAL A 229 SHEET 7 B 7 PRO A 306 LEU A 307 -1 O LEU A 307 N ILE A 299 LINK C GLY A 35 N MSE A 36 1555 1555 1.34 LINK C MSE A 36 N GLU A 37 1555 1555 1.33 LINK C ASP A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N LEU A 45 1555 1555 1.33 LINK C ASP A 71 N MSE A 72 1555 1555 1.34 LINK C MSE A 72 N ALA A 73 1555 1555 1.34 LINK C ALA A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N GLY A 76 1555 1555 1.33 LINK C ILE A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N GLY A 132 1555 1555 1.33 LINK C LYS A 251 N MSE A 252 1555 1555 1.33 LINK C MSE A 252 N ILE A 253 1555 1555 1.34 LINK C ASP A 284 N MSE A 285 1555 1555 1.34 LINK C MSE A 285 N ALA A 286 1555 1555 1.33 LINK NA NA A 319 O HOH A 357 1555 1555 2.36 LINK NA NA A 319 OH2 1PE A 328 1555 1555 2.46 LINK NA NA A 320 O1 PG4 A 327 1555 1555 2.52 LINK NA NA A 319 OH5 1PE A 328 1555 1555 2.53 LINK NA NA A 320 O HOH A 400 1555 1555 2.55 LINK NA NA A 319 OH3 1PE A 328 1555 1555 2.59 LINK NA NA A 319 OH4 1PE A 328 1555 1555 2.66 LINK NA NA A 319 OH6 1PE A 328 1555 1555 2.84 LINK NA NA A 320 O3 PG4 A 327 1555 1555 2.85 LINK NA NA A 320 O2 PG4 A 327 1555 1555 2.86 SITE 1 AC1 2 1PE A 328 HOH A 357 SITE 1 AC2 2 PG4 A 327 HOH A 400 SITE 1 AC3 5 ILE A 167 LEU A 178 GLY A 182 HIS A 186 SITE 2 AC3 5 PGE A 326 SITE 1 AC4 2 GLN A 250 LEU A 307 SITE 1 AC5 3 ARG A 80 ASP A 111 ALA A 113 SITE 1 AC6 2 ALA A 19 VAL A 23 SITE 1 AC7 1 LYS A 183 SITE 1 AC8 6 ASP A 56 LEU A 59 GLN A 187 SER A 241 SITE 2 AC8 6 GLN A 245 PEG A 321 SITE 1 AC9 9 ARG A 10 PHE A 12 ILE A 55 LEU A 59 SITE 2 AC9 9 LYS A 63 HIS A 186 ASP A 258 NA A 320 SITE 3 AC9 9 HOH A 400 SITE 1 BC1 9 LYS A 232 ALA A 233 ILE A 234 PRO A 235 SITE 2 BC1 9 GLU A 238 SER A 241 ASP A 284 ALA A 286 SITE 3 BC1 9 NA A 319 CRYST1 59.225 59.225 159.766 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016885 0.009748 0.000000 0.00000 SCALE2 0.000000 0.019497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006259 0.00000 MASTER 479 0 17 11 12 0 16 6 0 0 0 25 END