HEADER ISOMERASE 12-MAR-10 3M5P TITLE GLUCOSE-6-PHOSPHATE ISOMERASE FROM FRANCISELLA TULARENSIS COMPLEXED TITLE 2 WITH FRUCTOSE-6-PHOSPHATE. CAVEAT 3M5P F6P A 701 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, COMPND 5 PHI; COMPND 6 EC: 5.3.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS; SOURCE 3 ORGANISM_TAXID: 119856; SOURCE 4 STRAIN: SCHU S4; SOURCE 5 GENE: FTT1315C, PGI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, IDP02733, GLUCOSE-6-PHOSPHATE, ISOMERASE, KEYWDS 2 FRUCTOSE-6-PHOSPHATE., CYTOPLASM, GLUCONEOGENESIS, GLYCOLYSIS, KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,N.MALTSEVA,J.HASSEMAN,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 06-OCT-21 3M5P 1 REMARK SEQADV HETSYN REVDAT 3 29-JUL-20 3M5P 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM LINK SITE REVDAT 2 08-NOV-17 3M5P 1 REMARK REVDAT 1 23-MAR-10 3M5P 0 JRNL AUTH J.OSIPIUK,N.MALTSEVA,J.HASSEMAN,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF GLUCOSE-6-PHOSPHATE ISOMERASE JRNL TITL 2 FROM FRANCISELLA TULARENSIS COMPLEXED WITH JRNL TITL 3 FRUCTOSE-6-PHOSPHATE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 75874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3810 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5163 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 290 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : -0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4796 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3257 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6553 ; 1.453 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8075 ; 0.937 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 636 ; 5.444 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;37.268 ;25.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 915 ;14.270 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 720 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5389 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 922 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2848 ; 1.311 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1157 ; 0.435 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4643 ; 2.041 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 3.440 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1857 ; 5.088 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8053 ; 1.417 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 46.9613 57.0017 2.5998 REMARK 3 T TENSOR REMARK 3 T11: 0.0115 T22: 0.0457 REMARK 3 T33: 0.0196 T12: -0.0182 REMARK 3 T13: -0.0079 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.9250 L22: 0.6797 REMARK 3 L33: 0.6442 L12: -0.3166 REMARK 3 L13: 0.3825 L23: -0.2677 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.0109 S13: 0.0276 REMARK 3 S21: 0.0197 S22: -0.0571 S23: -0.1044 REMARK 3 S31: -0.0268 S32: 0.1226 S33: 0.0485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3M5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76000 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 32.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM/POTASSIUM PHOSPHATE REMARK 280 BUFFER, 35% MPD, 10 MM FRUCTOSE-6-PHOSPHATE, PH 6.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.81533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.90767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.90767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.81533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 524 CA CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 796 O HOH A 831 2.15 REMARK 500 OD2 ASP A 256 O HOH A 925 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 37 -122.00 53.97 REMARK 500 ASP A 149 -54.92 -138.55 REMARK 500 CYS A 164 11.58 -155.92 REMARK 500 SER A 173 -67.19 -147.18 REMARK 500 THR A 363 -127.83 -109.05 REMARK 500 ALA A 378 -61.35 -126.60 REMARK 500 SER A 400 -157.83 -103.86 REMARK 500 GLN A 498 63.78 -158.87 REMARK 500 ASP A 517 96.37 -160.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 O REMARK 620 2 SER A 63 O 92.2 REMARK 620 3 HOH A 637 O 81.4 167.1 REMARK 620 4 HOH A 671 O 77.3 77.5 90.1 REMARK 620 5 HOH A 751 O 167.1 82.5 101.3 90.1 REMARK 620 6 HOH A1034 O 88.0 97.5 93.5 164.1 104.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LJK RELATED DB: PDB REMARK 900 GLUCOSE-6-PHOSPHATE ISOMERASE FROM FRANCISELLA TULARENSIS COMPLEXED. REMARK 900 RELATED ID: IDP02733 RELATED DB: TARGETDB DBREF 3M5P A 1 540 UNP Q5NFC4 G6PI_FRATT 1 540 SEQADV 3M5P SER A -2 UNP Q5NFC4 EXPRESSION TAG SEQADV 3M5P ASN A -1 UNP Q5NFC4 EXPRESSION TAG SEQADV 3M5P ALA A 0 UNP Q5NFC4 EXPRESSION TAG SEQADV 3M5P LEU A 194 UNP Q5NFC4 PHE 194 ENGINEERED MUTATION SEQRES 1 A 543 SER ASN ALA MSE LEU PHE CYS ASP ASP SER LYS LYS TYR SEQRES 2 A 543 LEU LYS GLU GLN ASN ILE ASN LEU LYS ASN GLU PHE ASP SEQRES 3 A 543 LYS ASP ASP LYS ARG VAL GLU LYS PHE SER LEU LYS HIS SEQRES 4 A 543 GLN ASN ILE TYR PHE ASP TYR SER LYS ASN LEU ILE ASN SEQRES 5 A 543 ASP TYR ILE LEU LYS SER LEU LEU GLU SER ALA GLU LYS SEQRES 6 A 543 SER SER LEU LYS ASP LYS ILE LYS GLN MSE PHE ASN GLY SEQRES 7 A 543 ALA LYS ILE ASN SER THR GLU HIS ARG ALA VAL LEU HIS SEQRES 8 A 543 THR ALA LEU ARG ASP LEU SER SER THR PRO LEU ILE VAL SEQRES 9 A 543 ASP GLY GLN ASP ILE ARG GLN GLU VAL THR LYS GLU LYS SEQRES 10 A 543 GLN ARG VAL LYS GLU LEU VAL GLU LYS VAL VAL SER GLY SEQRES 11 A 543 ARG TRP ARG GLY PHE SER GLY LYS LYS ILE THR ASP ILE SEQRES 12 A 543 VAL ASN ILE GLY ILE GLY GLY SER ASP LEU GLY PRO LYS SEQRES 13 A 543 MSE VAL VAL ARG ALA LEU GLN PRO TYR HIS CYS THR ASP SEQRES 14 A 543 LEU LYS VAL HIS PHE VAL SER ASN VAL ASP ALA ASP SER SEQRES 15 A 543 LEU LEU GLN ALA LEU HIS VAL VAL ASP PRO GLU THR THR SEQRES 16 A 543 LEU LEU ILE ILE ALA SER LYS SER PHE SER THR GLU GLU SEQRES 17 A 543 THR LEU LEU ASN SER ILE SER ALA ARG GLU TRP LEU LEU SEQRES 18 A 543 ASP HIS TYR GLU ASP GLU LYS ALA VAL ALA ASN HIS PHE SEQRES 19 A 543 VAL ALA ILE SER SER LYS LEU ASP LYS VAL LYS GLU PHE SEQRES 20 A 543 GLY ILE ASP LEU GLU HIS CYS TYR LYS MSE TRP ASP TRP SEQRES 21 A 543 VAL GLY GLY ARG TYR SER LEU TRP SER SER ILE GLY MSE SEQRES 22 A 543 SER ILE ALA PHE ALA ILE GLY TYR ASP ASN PHE GLU LYS SEQRES 23 A 543 LEU LEU ALA GLY ALA TYR SER VAL ASP LYS HIS PHE LYS SEQRES 24 A 543 GLU THR GLU PHE SER LYS ASN ILE PRO VAL ILE MSE ALA SEQRES 25 A 543 LEU LEU ALA SER TYR TYR SER CYS THR TYR ASN SER GLN SEQRES 26 A 543 SER GLN ALA LEU LEU PRO TYR ASP GLU ARG LEU CYS TYR SEQRES 27 A 543 PHE VAL ASP TYR LEU GLN GLN ALA ASP MSE GLU SER ASN SEQRES 28 A 543 GLY LYS SER VAL ASN ILE ALA GLY GLU THR VAL ASN TYR SEQRES 29 A 543 GLN THR GLY VAL VAL LEU TRP GLY GLY VAL GLY THR ASN SEQRES 30 A 543 GLY GLN HIS ALA PHE HIS GLN LEU LEU HIS GLN GLY ASN SEQRES 31 A 543 ILE PHE ILE PRO VAL ASP PHE ILE ALA ILE ALA THR SER SEQRES 32 A 543 HIS HIS ASN TYR ASP ASN HIS GLN GLN ALA LEU LEU ALA SEQRES 33 A 543 ASN CYS PHE ALA GLN SER GLN ALA LEU MSE PHE GLY GLN SEQRES 34 A 543 SER TYR ASP MSE VAL TYR ASN GLU LEU LEU LYS SER GLY SEQRES 35 A 543 LEU ASN GLU THR GLN ALA LYS GLU LEU ALA ALA HIS LYS SEQRES 36 A 543 VAL ILE PRO GLY ASN ARG PRO SER THR THR ILE LEU LEU SEQRES 37 A 543 ASP GLU LEU SER PRO TYR SER LEU GLY ALA LEU ILE ALA SEQRES 38 A 543 LEU TYR GLU HIS LYS ILE PHE VAL GLN GLY VAL LEU TRP SEQRES 39 A 543 ASP ILE ASN SER TYR ASP GLN TRP GLY VAL GLU LEU GLY SEQRES 40 A 543 LYS LYS LEU GLY LYS ASN ILE LEU LYS ALA MSE ASN ASP SEQRES 41 A 543 ASP SER SER ASP GLU TYR GLN ASN LEU ASP ASP SER THR SEQRES 42 A 543 ARG GLN LEU ILE ALA LYS VAL LYS ASN LYS MODRES 3M5P MSE A 1 MET SELENOMETHIONINE MODRES 3M5P MSE A 72 MET SELENOMETHIONINE MODRES 3M5P MSE A 154 MET SELENOMETHIONINE MODRES 3M5P MSE A 254 MET SELENOMETHIONINE MODRES 3M5P MSE A 270 MET SELENOMETHIONINE MODRES 3M5P MSE A 308 MET SELENOMETHIONINE MODRES 3M5P MSE A 345 MET SELENOMETHIONINE MODRES 3M5P MSE A 423 MET SELENOMETHIONINE MODRES 3M5P MSE A 430 MET SELENOMETHIONINE MODRES 3M5P MSE A 515 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 72 8 HET MSE A 154 8 HET MSE A 254 8 HET MSE A 270 8 HET MSE A 308 8 HET MSE A 345 8 HET MSE A 423 13 HET MSE A 430 13 HET MSE A 515 8 HET F6P A 701 16 HET GOL A 702 12 HET GOL A 703 6 HET NA A 704 1 HET PO4 A 705 5 HET PO4 A 706 5 HETNAM MSE SELENOMETHIONINE HETNAM F6P 6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETSYN F6P FRUCTOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D-FRUCTOSE; 6- HETSYN 2 F6P O-PHOSPHONO-D-FRUCTOSE; 6-O-PHOSPHONO-FRUCTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 F6P C6 H13 O9 P FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 NA NA 1+ FORMUL 6 PO4 2(O4 P 3-) FORMUL 8 HOH *503(H2 O) HELIX 1 1 ASP A 5 LYS A 12 1 8 HELIX 2 2 GLU A 13 ASN A 15 5 3 HELIX 3 3 ASN A 17 ASP A 25 1 9 HELIX 4 4 LYS A 27 PHE A 32 1 6 HELIX 5 5 ASN A 49 SER A 63 1 15 HELIX 6 6 SER A 64 GLY A 75 1 12 HELIX 7 7 LEU A 87 ARG A 92 1 6 HELIX 8 8 ILE A 106 SER A 126 1 21 HELIX 9 9 ILE A 145 SER A 148 5 4 HELIX 10 10 ASP A 149 LEU A 159 1 11 HELIX 11 11 GLN A 160 HIS A 163 5 4 HELIX 12 12 ASP A 176 HIS A 185 1 10 HELIX 13 13 VAL A 186 VAL A 187 5 2 HELIX 14 14 ASP A 188 GLU A 190 5 3 HELIX 15 15 THR A 203 GLU A 222 1 20 HELIX 16 16 ASP A 223 LYS A 225 5 3 HELIX 17 17 ALA A 226 HIS A 230 1 5 HELIX 18 18 LYS A 237 GLY A 245 1 9 HELIX 19 19 ASP A 247 GLU A 249 5 3 HELIX 20 20 GLY A 259 SER A 263 5 5 HELIX 21 21 SER A 266 ILE A 268 5 3 HELIX 22 22 GLY A 269 GLY A 277 1 9 HELIX 23 23 GLY A 277 THR A 298 1 22 HELIX 24 24 GLU A 299 LYS A 302 5 4 HELIX 25 25 ASN A 303 TYR A 319 1 17 HELIX 26 26 ASP A 330 CYS A 334 5 5 HELIX 27 27 TYR A 335 GLY A 349 1 15 HELIX 28 28 THR A 373 ALA A 378 5 6 HELIX 29 29 PHE A 379 GLY A 386 1 8 HELIX 30 30 TYR A 404 GLY A 425 1 22 HELIX 31 31 SER A 427 SER A 438 1 12 HELIX 32 32 ASN A 441 VAL A 453 1 13 HELIX 33 33 SER A 469 TRP A 491 1 23 HELIX 34 34 GLN A 498 GLY A 500 5 3 HELIX 35 35 VAL A 501 ASP A 517 1 17 HELIX 36 36 SER A 520 LEU A 526 1 7 HELIX 37 37 ASP A 527 LYS A 540 1 14 SHEET 1 A 6 SER A 33 HIS A 36 0 SHEET 2 A 6 ILE A 39 ASP A 42 -1 O PHE A 41 N LEU A 34 SHEET 3 A 6 THR A 461 LEU A 465 -1 O LEU A 464 N TYR A 40 SHEET 4 A 6 VAL A 392 ILE A 397 1 N PHE A 394 O THR A 461 SHEET 5 A 6 SER A 323 PRO A 328 1 N LEU A 327 O ASP A 393 SHEET 6 A 6 VAL A 366 GLY A 369 1 O TRP A 368 N LEU A 326 SHEET 1 B 2 ILE A 100 VAL A 101 0 SHEET 2 B 2 GLN A 104 ASP A 105 -1 O GLN A 104 N VAL A 101 SHEET 1 C 5 LYS A 168 VAL A 172 0 SHEET 2 C 5 ASP A 139 ILE A 143 1 N ASN A 142 O VAL A 172 SHEET 3 C 5 THR A 192 ALA A 197 1 O ALA A 197 N ILE A 143 SHEET 4 C 5 PHE A 231 SER A 235 1 O ILE A 234 N ILE A 196 SHEET 5 C 5 CYS A 251 LYS A 253 1 O TYR A 252 N ALA A 233 SSBOND 1 CYS A 4 CYS A 317 1555 1555 2.13 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LEU A 2 1555 1555 1.34 LINK C GLN A 71 N MSE A 72 1555 1555 1.32 LINK C MSE A 72 N PHE A 73 1555 1555 1.34 LINK C LYS A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N VAL A 155 1555 1555 1.32 LINK C LYS A 253 N MSE A 254 1555 1555 1.32 LINK C MSE A 254 N TRP A 255 1555 1555 1.31 LINK C GLY A 269 N MSE A 270 1555 1555 1.35 LINK C MSE A 270 N SER A 271 1555 1555 1.33 LINK C ILE A 307 N MSE A 308 1555 1555 1.33 LINK C MSE A 308 N ALA A 309 1555 1555 1.33 LINK C ASP A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N GLU A 346 1555 1555 1.34 LINK C LEU A 422 N MSE A 423 1555 1555 1.33 LINK C MSE A 423 N PHE A 424 1555 1555 1.32 LINK C ASP A 429 N MSE A 430 1555 1555 1.34 LINK C MSE A 430 N VAL A 431 1555 1555 1.34 LINK C ALA A 514 N MSE A 515 1555 1555 1.33 LINK C MSE A 515 N ASN A 516 1555 1555 1.32 LINK O GLU A 61 NA NA A 704 1555 1555 2.51 LINK O SER A 63 NA NA A 704 1555 1555 2.46 LINK O HOH A 637 NA NA A 704 1555 1555 2.29 LINK O HOH A 671 NA NA A 704 1555 1555 2.45 LINK NA NA A 704 O HOH A 751 1555 1555 2.66 LINK NA NA A 704 O HOH A1034 1555 1555 2.01 CISPEP 1 GLY A 372 THR A 373 0 8.77 CRYST1 114.272 114.272 83.723 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008751 0.005052 0.000000 0.00000 SCALE2 0.000000 0.010105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011944 0.00000 MASTER 343 0 16 37 13 0 0 6 0 0 0 42 END