HEADER HYDROLASE 05-MAR-10 3M1T TITLE CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOHYDROLASE (YP_929327.1) FROM TITLE 2 SHEWANELLA AMAZONENSIS SB2B AT 1.62 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE SIGNAL TRANSDUCTION PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA AMAZONENSIS; SOURCE 3 ORGANISM_TAXID: 326297; SOURCE 4 STRAIN: ATCC BAA-1098 / SB2B; SOURCE 5 GENE: SAMA_3455; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE PHOSPHOHYDROLASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 17-JUL-19 3M1T 1 REMARK LINK REVDAT 3 25-OCT-17 3M1T 1 REMARK REVDAT 2 13-JUL-11 3M1T 1 VERSN REVDAT 1 31-MAR-10 3M1T 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOHYDROLASE (YP_929327.1) JRNL TITL 2 FROM SHEWANELLA AMAZONENSIS SB2B AT 1.62 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1990 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2276 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1476 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3124 ; 1.567 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3664 ; 1.005 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 4.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;39.126 ;25.682 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;14.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2670 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 419 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1492 ; 0.935 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 602 ; 0.279 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 1.601 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 784 ; 2.764 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 708 ; 4.146 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3784 29.3753 11.5761 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.2006 REMARK 3 T33: 0.0854 T12: -0.0621 REMARK 3 T13: 0.0012 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7369 L22: 0.6419 REMARK 3 L33: 1.4229 L12: 0.3229 REMARK 3 L13: -0.2997 L23: 0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.1594 S13: -0.0147 REMARK 3 S21: -0.1084 S22: 0.0579 S23: 0.0257 REMARK 3 S31: 0.0046 S32: -0.3739 S33: -0.0187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM REMARK 3 RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION REMARK 3 PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING REMARK 3 PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE REMARK 3 RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.GLYCEROL REMARK 3 MOLECULE USED AS CRYOPROTECTANT IS MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3M1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97936,0.97925 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 29.348 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : 0.68400 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6000M (NH4)2SO4, 0.1M BICINE PH 9.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.52300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.04600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.04600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.52300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 59 REMARK 465 PHE A 60 REMARK 465 GLY A 61 REMARK 465 CYS A 62 REMARK 465 SER A 63 REMARK 465 ARG A 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CE NZ REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 ASP A 232 CG OD1 OD2 REMARK 470 LEU A 245 CG CD1 CD2 REMARK 470 LYS A 249 CE NZ REMARK 470 GLU A 257 OE1 OE2 REMARK 470 LYS A 261 CE NZ REMARK 470 LYS A 271 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 189 34.82 71.31 REMARK 500 HIS A 203 57.91 -148.38 REMARK 500 LYS A 249 57.49 -103.32 REMARK 500 VAL A 250 152.73 -47.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 275 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394107 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3M1T A 1 274 UNP A1SBA1 A1SBA1_SHEAM 1 274 SEQADV 3M1T GLY A 0 UNP A1SBA1 LEADER SEQUENCE SEQRES 1 A 275 GLY MSE HIS SER ALA ALA LEU LEU GLN LYS VAL ASP GLU SEQRES 2 A 275 LEU PRO ARG LEU PRO LYS ALA ILE ALA GLU LEU LEU ASP SEQRES 3 A 275 VAL VAL ASN ASN GLU ASP SER THR VAL LYS ALA VAL SER SEQRES 4 A 275 GLU LYS LEU SER HIS ASP PRO VAL LEU SER ALA ARG VAL SEQRES 5 A 275 LEU ARG LEU ALA ASN SER ALA ARG PHE GLY CYS SER ARG SEQRES 6 A 275 GLU VAL GLY THR ILE ASP ASP ALA VAL VAL ARG LEU GLY SEQRES 7 A 275 MSE GLN THR LEU ARG THR LEU VAL ILE ALA SER ALA VAL SEQRES 8 A 275 VAL GLY ALA VAL PRO LYS VAL GLU GLY PHE ASP LEU ALA SEQRES 9 A 275 ASP PHE TRP GLY ASN THR PHE GLU VAL ALA ILE ILE CYS SEQRES 10 A 275 GLN GLU LEU ALA LYS ARG LEU GLY THR LEU PRO GLU GLU SEQRES 11 A 275 ALA PHE THR CYS GLY ILE LEU HIS SER ILE GLY GLU LEU SEQRES 12 A 275 LEU ILE VAL ASN GLY ASP PRO ALA VAL ALA ALA THR ILE SEQRES 13 A 275 SER ALA ALA VAL ALA ASP GLY ALA ASP ARG ASN LEU MSE SEQRES 14 A 275 GLU LYS GLU LEU LEU GLY TYR ASP ASN ALA GLU ILE GLY SEQRES 15 A 275 ALA LEU LEU ALA GLN SER TRP LYS PHE THR PRO HIS LEU SEQRES 16 A 275 VAL LYS GLY ILE GLN PHE GLN ASN HIS PRO LYS SER ALA SEQRES 17 A 275 GLU PRO TYR SER LYS LEU ALA GLY MSE LEU ALA MSE ALA SEQRES 18 A 275 LYS GLN ILE ALA ALA ASP TRP ASP LYS ILE PRO ASP ASP SEQRES 19 A 275 GLU ARG THR SER TRP LEU ALA GLN ILE ASN ILE LEU ALA SEQRES 20 A 275 GLY ILE LYS VAL ASP LEU GLY GLY LEU ALA GLU LYS LEU SEQRES 21 A 275 ALA LYS MSE HIS GLY GLN GLY MSE GLU MSE GLY LYS GLN SEQRES 22 A 275 LEU ALA MODRES 3M1T MSE A 1 MET SELENOMETHIONINE MODRES 3M1T MSE A 78 MET SELENOMETHIONINE MODRES 3M1T MSE A 168 MET SELENOMETHIONINE MODRES 3M1T MSE A 216 MET SELENOMETHIONINE MODRES 3M1T MSE A 219 MET SELENOMETHIONINE MODRES 3M1T MSE A 262 MET SELENOMETHIONINE MODRES 3M1T MSE A 267 MET SELENOMETHIONINE MODRES 3M1T MSE A 269 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 78 8 HET MSE A 168 8 HET MSE A 216 8 HET MSE A 219 8 HET MSE A 262 8 HET MSE A 267 8 HET MSE A 269 8 HET GOL A 275 12 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *247(H2 O) HELIX 1 1 SER A 3 GLN A 8 1 6 HELIX 2 2 LYS A 9 LEU A 13 5 5 HELIX 3 3 PRO A 17 ASN A 29 1 13 HELIX 4 4 THR A 33 HIS A 43 1 11 HELIX 5 5 ASP A 44 ASN A 56 1 13 HELIX 6 6 THR A 68 GLY A 77 1 10 HELIX 7 7 GLY A 77 VAL A 94 1 18 HELIX 8 8 ASP A 101 GLY A 124 1 24 HELIX 9 9 LEU A 126 HIS A 137 1 12 HELIX 10 10 SER A 138 ASP A 148 1 11 HELIX 11 11 ASP A 148 ASP A 161 1 14 HELIX 12 12 ASP A 164 GLY A 174 1 11 HELIX 13 13 ASP A 176 TRP A 188 1 13 HELIX 14 14 THR A 191 PHE A 200 1 10 HELIX 15 15 HIS A 203 ALA A 207 5 5 HELIX 16 16 SER A 211 TRP A 227 1 17 HELIX 17 17 ASP A 228 ILE A 230 5 3 HELIX 18 18 GLU A 234 GLY A 247 1 14 HELIX 19 19 GLY A 254 HIS A 263 1 10 HELIX 20 20 GLY A 264 GLN A 272 1 9 LINK C GLY A 0 N AMSE A 1 1555 1555 1.35 LINK C GLY A 0 N BMSE A 1 1555 1555 1.33 LINK C AMSE A 1 N HIS A 2 1555 1555 1.33 LINK C BMSE A 1 N HIS A 2 1555 1555 1.34 LINK C GLY A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N GLN A 79 1555 1555 1.33 LINK C LEU A 167 N MSE A 168 1555 1555 1.35 LINK C MSE A 168 N GLU A 169 1555 1555 1.33 LINK C GLY A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N LEU A 217 1555 1555 1.35 LINK C ALA A 218 N MSE A 219 1555 1555 1.32 LINK C MSE A 219 N ALA A 220 1555 1555 1.34 LINK C LYS A 261 N MSE A 262 1555 1555 1.32 LINK C MSE A 262 N HIS A 263 1555 1555 1.32 LINK C GLY A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N AGLU A 268 1555 1555 1.34 LINK C MSE A 267 N BGLU A 268 1555 1555 1.34 LINK C AGLU A 268 N MSE A 269 1555 1555 1.33 LINK C BGLU A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N GLY A 270 1555 1555 1.33 CISPEP 1 GLU A 208 PRO A 209 0 -7.51 SITE 1 AC1 8 LEU A 167 GLU A 171 ASP A 232 ASP A 233 SITE 2 AC1 8 GLU A 234 ARG A 235 HOH A 276 HOH A 295 CRYST1 69.729 69.729 124.569 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014341 0.008280 0.000000 0.00000 SCALE2 0.000000 0.016560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008028 0.00000 MASTER 357 0 9 20 0 0 2 6 0 0 0 22 END