HEADER RHOA-BINDING PROTEIN 28-FEB-10 3LYQ TITLE CRYSTAL STRUCTURE OF IPGB2 FROM SHIGELLA FLEXNERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: IPGB2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IPGB2, PROBABLY SECRETED BY THE MXI-SPA SECRETION MACHINERY; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPGB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-M 41 KEYWDS IPGB2, GEF, WXXXE, TTSS EFFECTOR PROTEIN, BACTERIAL GEF, CYTOSKELETON KEYWDS 2 DYNAMICS, RHOA-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.U.KLINK,S.BARDEN,T.V.HEIDLER,C.BORCHERS,M.LADWEIN,T.E.B.STRADAL, AUTHOR 2 K.ROTTNER,D.W.HEINZ REVDAT 3 13-JUL-11 3LYQ 1 VERSN REVDAT 2 02-JUN-10 3LYQ 1 JRNL REVDAT 1 31-MAR-10 3LYQ 0 JRNL AUTH B.U.KLINK,S.BARDEN,T.V.HEIDLER,C.BORCHERS,M.LADWEIN, JRNL AUTH 2 T.E.B.STRADAL,K.ROTTNER,D.W.HEINZ JRNL TITL STRUCTURE OF SHIGELLA IPGB2 IN COMPLEX WITH HUMAN RHOA: JRNL TITL 2 IMPLICATIONS FOR THE MECHANISM OF BACTERIAL GEF-MIMICRY JRNL REF J.BIOL.CHEM. V. 285 17197 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20363740 JRNL DOI 10.1074/JBC.M110.107953 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 24089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 49.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.281 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.362 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3044 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4075 ; 1.694 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 5.612 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;36.742 ;25.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;19.363 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.853 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2234 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1842 ; 0.825 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2989 ; 1.576 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1202 ; 2.249 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1086 ; 3.825 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6950 -14.5090 10.1110 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.1620 REMARK 3 T33: 0.2871 T12: -0.0392 REMARK 3 T13: -0.0237 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.4177 L22: 0.5786 REMARK 3 L33: 0.1889 L12: 0.0559 REMARK 3 L13: 0.1507 L23: 0.0955 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: -0.1599 S13: 0.1188 REMARK 3 S21: 0.1518 S22: -0.0065 S23: 0.1420 REMARK 3 S31: 0.0063 S32: -0.1396 S33: -0.0576 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2870 -23.6510 35.6110 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.3741 REMARK 3 T33: 0.4399 T12: 0.0922 REMARK 3 T13: -0.0835 T23: 0.2361 REMARK 3 L TENSOR REMARK 3 L11: 3.1222 L22: 2.1670 REMARK 3 L33: 8.8205 L12: -1.0291 REMARK 3 L13: -0.1867 L23: -2.5460 REMARK 3 S TENSOR REMARK 3 S11: -0.3821 S12: -0.7701 S13: -0.6169 REMARK 3 S21: -0.0460 S22: -0.1621 S23: -0.2865 REMARK 3 S31: 0.5473 S32: 0.5769 S33: 0.5442 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9130 -17.1900 20.9490 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2467 REMARK 3 T33: 0.3541 T12: -0.0348 REMARK 3 T13: -0.0179 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 1.8606 L22: 2.1000 REMARK 3 L33: 2.8367 L12: -0.0278 REMARK 3 L13: -1.4914 L23: 0.5069 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.6170 S13: -0.1174 REMARK 3 S21: 0.5338 S22: -0.1237 S23: 0.0435 REMARK 3 S31: 0.0565 S32: 0.3409 S33: 0.1811 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 50.5460 -22.7730 -6.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.2394 REMARK 3 T33: 0.3448 T12: -0.0519 REMARK 3 T13: -0.0332 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 1.2441 L22: 1.3416 REMARK 3 L33: 0.8780 L12: -0.7970 REMARK 3 L13: -0.2830 L23: 0.2617 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.1149 S13: -0.1129 REMARK 3 S21: 0.0225 S22: -0.0315 S23: -0.1133 REMARK 3 S31: 0.1555 S32: 0.0891 S33: -0.0367 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5880 -26.5890 -32.4170 REMARK 3 T TENSOR REMARK 3 T11: 0.3726 T22: 0.2586 REMARK 3 T33: 0.4610 T12: 0.1716 REMARK 3 T13: -0.2909 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 3.2096 L22: 1.9523 REMARK 3 L33: 8.6731 L12: 0.7433 REMARK 3 L13: 0.2734 L23: -1.1604 REMARK 3 S TENSOR REMARK 3 S11: 0.2867 S12: -0.0687 S13: 0.3147 REMARK 3 S21: -0.5986 S22: -0.2178 S23: 0.8566 REMARK 3 S31: -0.3609 S32: -0.6172 S33: -0.0689 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 185 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6000 -28.3220 -17.4540 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.2245 REMARK 3 T33: 0.3148 T12: 0.0265 REMARK 3 T13: -0.0616 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.7138 L22: 2.1374 REMARK 3 L33: 3.0570 L12: -0.2147 REMARK 3 L13: -1.2445 L23: 1.2361 REMARK 3 S TENSOR REMARK 3 S11: 0.0939 S12: 0.5312 S13: -0.0091 REMARK 3 S21: -0.4319 S22: -0.1372 S23: 0.1321 REMARK 3 S31: -0.2419 S32: -0.1662 S33: 0.0434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REMARK 3 RESIDUAL ONLY; REMARK 3 AN ALMOST SPHERICAL COMPLEX OF LIGANDS MEDIATES A STRONG REMARK 3 CRYSTALLOGRAPHIC CONTACT BETWEEN FOUR DIFFERENT IPGB2 MOLECULES. REMARK 3 THE CLUSTER CONTAINS AT LEAST TWO IRON ATOMS WITH A FE-FE-DISTANCE REMARK 3 IDENTICAL TO THE DISTANCE IN MU-OXO-DIIRON. AN INTERPRETATION AS A REMARK 3 FE-CITRATE CLUSTER CONTAINING FOUR CITRATE MOLECULES LOWERS BOTH REMARK 3 FREE AND WORKING R FACTOR SIGNIFICANTLY. HOWEVER, THE PRECISE REMARK 3 ARCHITECTURE OF THE CLUSTER USED FOR THIS INTERPRETATION (CHAIN A REMARK 3 OR B) ONLY REPRESENTS THE "BEST COMPROMISE". LIGANDS IN CHAIN A OR REMARK 3 B MAY NOT BE COMPLETELY CORRECT, CONTAIN UNREALISTIC ATOM DISTANCES REMARK 3 AND DO NOT PERFECTLY DESCRIBE THE ELECTRON DENSITY. REMARK 4 REMARK 4 3LYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-10. REMARK 100 THE RCSB ID CODE IS RCSB057894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-08; 25-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID23-1; ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900; 0.979 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 22.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 18.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% (W/W) PEG 3350, 7% ISOPROPANOL, REMARK 280 10MM FECL3, 100MM TRISODIUM CITRATE/CITRIC ACID PH 5.5, 10MM REMARK 280 NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.04000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.04000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.04000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.04000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO BIOLOGICAL UNITS, WHICH REMARK 300 INTERACT VIA DOMAIN-SWAPPING. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ASP A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 SER A 186 REMARK 465 PRO A 187 REMARK 465 PHE A 188 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ASP B 0 REMARK 465 MET B 1 REMARK 465 PHE B 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OA2 FLC A 301 FE2 FEO A 401 1.11 REMARK 500 CAC FLC A 301 FE2 FEO A 401 1.61 REMARK 500 CA FLC A 301 O FEO A 401 1.67 REMARK 500 OA2 FLC A 301 O FEO A 401 1.85 REMARK 500 CAC FLC A 301 O FEO A 401 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OB1 FLC A 301 OG2 FLC B 302 8555 1.82 REMARK 500 OA2 FLC A 301 FE1 FEO A 401 8555 1.83 REMARK 500 FE1 FEO A 401 OHB FLC B 302 8555 1.87 REMARK 500 OG1 FLC B 302 OG1 FLC B 302 8555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 135 CG GLU B 135 CD 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 6 145.14 -175.52 REMARK 500 ILE A 59 -18.88 69.87 REMARK 500 ASP B 92 -70.14 -42.71 REMARK 500 VAL B 165 -61.90 -125.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC A 301 OB1 REMARK 620 2 FEO A 401 O 81.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC B 302 OA2 REMARK 620 2 FEO A 401 O 155.9 REMARK 620 3 FLC B 302 OHB 97.6 105.9 REMARK 620 4 FLC A 301 OA1 72.5 94.5 133.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LW8 RELATED DB: PDB REMARK 900 IPGB2 IN COMPLEX WITH HUMAN RHOA (COMPLEX A) REMARK 900 RELATED ID: 3LWN RELATED DB: PDB REMARK 900 IPGB2 IN COMPLEX WITH HUMAN RHOA (COMPLEX B) REMARK 900 RELATED ID: 3LXR RELATED DB: PDB REMARK 900 IPGB2 IN COMPLEX WITH HUMAN RHOA (COMPLEX C) DBREF 3LYQ A 1 188 UNP Q9AJW7 Q9AJW7_SHIFL 1 188 DBREF 3LYQ B 1 188 UNP Q9AJW7 Q9AJW7_SHIFL 1 188 SEQADV 3LYQ GLY A -3 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ ALA A -2 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ MET A -1 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ ASP A 0 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ GLY B -3 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ ALA B -2 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ MET B -1 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ ASP B 0 UNP Q9AJW7 EXPRESSION TAG SEQRES 1 A 192 GLY ALA MET ASP MET LEU GLY THR SER PHE ASN ASN PHE SEQRES 2 A 192 GLY ILE SER LEU SER HIS LYS ARG TYR PHE SER GLY LYS SEQRES 3 A 192 VAL ASP GLU ILE ILE ARG CYS THR MET GLY LYS ARG ILE SEQRES 4 A 192 VAL LYS ILE SER SER THR LYS ILE ASN THR SER ILE LEU SEQRES 5 A 192 SER SER VAL SER GLU GLN ILE GLY GLU ASN ILE THR ASP SEQRES 6 A 192 TRP LYS ASN ASP GLU LYS LYS VAL TYR VAL SER ARG VAL SEQRES 7 A 192 VAL ASN GLN CYS ILE ASP LYS PHE CYS ALA GLU HIS SER SEQRES 8 A 192 ARG LYS ILE GLY ASP ASN LEU ARG LYS GLN ILE PHE LYS SEQRES 9 A 192 GLN VAL GLU LYS ASP TYR ARG ILE SER LEU ASP ILE ASN SEQRES 10 A 192 ALA ALA GLN SER SER ILE ASN HIS LEU VAL SER GLY SER SEQRES 11 A 192 SER TYR PHE LYS LYS LYS MET ASP GLU LEU CYS GLU GLY SEQRES 12 A 192 MET ASN ARG SER VAL LYS ASN ASP THR THR SER ASN VAL SEQRES 13 A 192 ALA ASN LEU ILE SER ASP GLN PHE PHE GLU LYS ASN VAL SEQRES 14 A 192 GLN TYR ILE ASP LEU LYS LYS LEU ARG GLY ASN MET SER SEQRES 15 A 192 ASP TYR ILE THR ASN LEU GLU SER PRO PHE SEQRES 1 B 192 GLY ALA MET ASP MET LEU GLY THR SER PHE ASN ASN PHE SEQRES 2 B 192 GLY ILE SER LEU SER HIS LYS ARG TYR PHE SER GLY LYS SEQRES 3 B 192 VAL ASP GLU ILE ILE ARG CYS THR MET GLY LYS ARG ILE SEQRES 4 B 192 VAL LYS ILE SER SER THR LYS ILE ASN THR SER ILE LEU SEQRES 5 B 192 SER SER VAL SER GLU GLN ILE GLY GLU ASN ILE THR ASP SEQRES 6 B 192 TRP LYS ASN ASP GLU LYS LYS VAL TYR VAL SER ARG VAL SEQRES 7 B 192 VAL ASN GLN CYS ILE ASP LYS PHE CYS ALA GLU HIS SER SEQRES 8 B 192 ARG LYS ILE GLY ASP ASN LEU ARG LYS GLN ILE PHE LYS SEQRES 9 B 192 GLN VAL GLU LYS ASP TYR ARG ILE SER LEU ASP ILE ASN SEQRES 10 B 192 ALA ALA GLN SER SER ILE ASN HIS LEU VAL SER GLY SER SEQRES 11 B 192 SER TYR PHE LYS LYS LYS MET ASP GLU LEU CYS GLU GLY SEQRES 12 B 192 MET ASN ARG SER VAL LYS ASN ASP THR THR SER ASN VAL SEQRES 13 B 192 ALA ASN LEU ILE SER ASP GLN PHE PHE GLU LYS ASN VAL SEQRES 14 B 192 GLN TYR ILE ASP LEU LYS LYS LEU ARG GLY ASN MET SER SEQRES 15 B 192 ASP TYR ILE THR ASN LEU GLU SER PRO PHE HET FLC A 301 13 HET FEO A 401 3 HET FEO A 402 3 HET FLC B 302 13 HET FLC B 303 13 HETNAM FLC CITRATE ANION HETNAM FEO MU-OXO-DIIRON FORMUL 3 FLC 3(C6 H5 O7 3-) FORMUL 4 FEO 2(FE2 O) FORMUL 8 HOH *106(H2 O) HELIX 1 1 SER A 40 GLY A 56 1 17 HELIX 2 2 ILE A 59 ALA A 84 1 26 HELIX 3 3 GLY A 91 TYR A 106 1 16 HELIX 4 4 SER A 118 SER A 126 1 9 HELIX 5 5 SER A 126 CYS A 137 1 12 HELIX 6 6 ASN A 141 VAL A 165 1 25 HELIX 7 7 ASP A 169 ASN A 183 1 15 HELIX 8 8 SER B 40 GLN B 54 1 15 HELIX 9 9 ASN B 58 HIS B 86 1 29 HELIX 10 10 GLY B 91 TYR B 106 1 16 HELIX 11 11 SER B 118 SER B 126 1 9 HELIX 12 12 SER B 126 CYS B 137 1 12 HELIX 13 13 ASN B 141 VAL B 165 1 25 HELIX 14 14 ASP B 169 MET B 177 1 9 HELIX 15 15 ILE B 181 SER B 186 1 6 SHEET 1 A 4 THR A 4 PHE A 6 0 SHEET 2 A 4 PHE A 9 ARG A 17 -1 O ILE A 11 N THR A 4 SHEET 3 A 4 VAL A 23 MET A 31 -1 O THR A 30 N GLY A 10 SHEET 4 A 4 ILE B 35 SER B 39 -1 O ILE B 38 N ILE A 27 SHEET 1 B 4 ILE A 35 SER A 39 0 SHEET 2 B 4 VAL B 23 MET B 31 -1 O ILE B 27 N ILE A 38 SHEET 3 B 4 PHE B 9 ARG B 17 -1 N GLY B 10 O THR B 30 SHEET 4 B 4 THR B 4 PHE B 6 -1 N THR B 4 O ILE B 11 LINK OB1 FLC A 301 FE1 FEO A 401 1555 1555 1.80 LINK OA2 FLC B 302 FE2 FEO A 401 1555 1555 2.04 LINK OHB FLC B 302 FE2 FEO A 401 1555 1555 2.12 LINK OA1 FLC A 301 FE2 FEO A 401 1555 1555 2.27 SITE 1 AC1 6 ARG A 142 FEO A 401 ASN B 141 ARG B 142 SITE 2 AC1 6 SER B 143 FLC B 302 SITE 1 AC2 2 FLC A 301 FLC B 302 SITE 1 AC3 2 ASN A 93 ASN B 93 SITE 1 AC4 6 ASN A 141 ARG A 142 FLC A 301 FEO A 401 SITE 2 AC4 6 ASN B 141 ARG B 142 SITE 1 AC5 4 ARG A 28 LYS A 37 ARG B 28 LYS B 37 CRYST1 114.080 114.080 88.770 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008766 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011265 0.00000 MASTER 521 0 5 15 8 0 7 6 0 0 0 30 END