HEADER TRANSFERASE 23-FEB-10 3LW6 TITLE CRYSTAL STRUCTURE OF DROSOPHILA BETA1,4-GALACTOSYLTRANSFERASE-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-4-GALACTOSYLTRANSFERASE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: FI08434P; COMPND 6 EC: 2.4.1.-, 2.4.1.133; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: 4-GALACTOSYLTRANSFERASE-7, BETA-4GALT7, BETA1, BETA4GALT7, SOURCE 6 BETA4GALT7-RA, DMEL_CG11780; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS PROTEIN-MN-UDP COMPLEX, GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.RAMAKRISHNAN,P.K.QASBA REVDAT 2 02-JUN-10 3LW6 1 JRNL REVDAT 1 16-MAR-10 3LW6 0 JRNL AUTH B.RAMAKRISHNAN,P.K.QASBA JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF DROSOPHILA JRNL TITL 2 BETA1,4-GALACTOSYLTRANSFERASE-7. JRNL REF J.BIOL.CHEM. V. 285 15619 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20236943 JRNL DOI 10.1074/JBC.M109.099564 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 39114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2085 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2826 ; 1.991 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.738 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;31.158 ;23.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;12.172 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.163 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1596 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1202 ; 1.212 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1949 ; 2.127 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 883 ; 3.405 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 877 ; 5.105 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LW6 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-10. REMARK 100 THE RCSB ID CODE IS RCSB057805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41321 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 11.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41300 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: BROMINATED STRUCTURE WAS SOLVED USING SAD AT 2.0 REMARK 200 A RESOLUTION AND THE CORDINATED ARE USED AS THE STATING MODEL. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20 MG/ML PROTEIN WITH 33 MM UDP AND REMARK 280 66 MM MNCL2 WITH A PRECIPITATION SOLUTION CONTAINING 100 MM REMARK 280 TRIS.HCL, 1 M NACL, 15% MPD AND 5% PEG 4K., PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.82800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.91750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.91750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.24200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.91750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.91750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.41400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.91750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.91750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 100.24200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.91750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.91750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.41400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.82800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 MET A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLN A 31 REMARK 465 GLN A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 PRO A 39 REMARK 465 MET A 40 REMARK 465 LEU A 41 REMARK 465 ILE A 42 REMARK 465 GLU A 43 REMARK 465 PHE A 44 REMARK 465 ASN A 45 REMARK 465 ILE A 46 REMARK 465 PRO A 47 REMARK 465 VAL A 48 REMARK 465 ASP A 49 REMARK 465 LEU A 50 REMARK 465 LYS A 51 REMARK 465 LEU A 52 REMARK 465 VAL A 53 REMARK 465 GLU A 54 REMARK 465 GLN A 55 REMARK 465 GLN A 56 REMARK 465 ASN A 57 REMARK 465 PRO A 58 REMARK 465 LYS A 59 REMARK 465 VAL A 60 REMARK 465 LYS A 61 REMARK 465 LEU A 62 REMARK 465 GLY A 63 REMARK 465 GLY A 64 REMARK 465 ARG A 65 REMARK 465 TYR A 66 REMARK 465 THR A 67 REMARK 465 PRO A 68 REMARK 465 MET A 69 REMARK 465 ASP A 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 120 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET A 143 CG - SD - CE ANGL. DEV. = -17.2 DEGREES REMARK 500 ASN A 257 C - N - CA ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 169 53.26 -94.07 REMARK 500 LEU A 209 -19.88 78.72 REMARK 500 PHE A 256 -146.66 55.18 REMARK 500 ASN A 257 53.98 -104.37 REMARK 500 ASP A 287 53.89 36.78 REMARK 500 GLN A 288 -0.38 77.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 314 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UDP A 312 O1B REMARK 620 2 ASP A 147 OD2 177.0 REMARK 620 3 UDP A 312 O1A 86.5 90.7 REMARK 620 4 HIS A 243 ND1 93.3 85.7 88.3 REMARK 620 5 HIS A 241 NE2 90.4 92.5 174.6 96.3 REMARK 620 6 HOH A 386 O 91.8 89.0 88.1 173.5 87.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O0R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF BETA1,4- REMARK 900 GALACTOSYLTRANSFERASE-1 DBREF 3LW6 A 71 311 UNP Q9VBZ9 Q9VBZ9_DROME 71 311 SEQADV 3LW6 ALA A 25 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 SER A 26 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 MET A 27 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 THR A 28 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 29 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 30 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLN A 31 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLN A 32 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 MET A 33 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 34 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ARG A 35 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 36 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 SER A 37 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 38 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PRO A 39 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 MET A 40 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LEU A 41 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ILE A 42 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLU A 43 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PHE A 44 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ASN A 45 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ILE A 46 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PRO A 47 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 VAL A 48 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ASP A 49 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LEU A 50 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LYS A 51 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LEU A 52 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 VAL A 53 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLU A 54 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLN A 55 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLN A 56 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ASN A 57 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PRO A 58 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LYS A 59 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 VAL A 60 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LYS A 61 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LEU A 62 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 63 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 64 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ARG A 65 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 TYR A 66 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 THR A 67 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PRO A 68 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 MET A 69 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ASP A 70 UNP Q9VBZ9 EXPRESSION TAG SEQRES 1 A 287 ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SER SEQRES 2 A 287 GLY PRO MET LEU ILE GLU PHE ASN ILE PRO VAL ASP LEU SEQRES 3 A 287 LYS LEU VAL GLU GLN GLN ASN PRO LYS VAL LYS LEU GLY SEQRES 4 A 287 GLY ARG TYR THR PRO MET ASP GLY ALA SER VAL HIS LYS SEQRES 5 A 287 MET ALA LEU LEU VAL PRO PHE ARG ASP ARG PHE GLU GLU SEQRES 6 A 287 LEU LEU GLN PHE VAL PRO HIS MET THR ALA PHE LEU LYS SEQRES 7 A 287 ARG GLN GLY VAL ALA HIS HIS ILE PHE VAL LEU ASN GLN SEQRES 8 A 287 VAL ASP ARG PHE ARG PHE ASN ARG ALA SER LEU ILE ASN SEQRES 9 A 287 VAL GLY PHE GLN PHE ALA SER ASP VAL TYR ASP TYR ILE SEQRES 10 A 287 ALA MET HIS ASP VAL ASP LEU LEU PRO LEU ASN ASP ASN SEQRES 11 A 287 LEU LEU TYR GLU TYR PRO SER SER LEU GLY PRO LEU HIS SEQRES 12 A 287 ILE ALA GLY PRO LYS LEU HIS PRO LYS TYR HIS TYR ASP SEQRES 13 A 287 ASN PHE VAL GLY GLY ILE LEU LEU VAL ARG ARG GLU HIS SEQRES 14 A 287 PHE LYS GLN MET ASN GLY MET SER ASN GLN TYR TRP GLY SEQRES 15 A 287 TRP GLY LEU GLU ASP ASP GLU PHE PHE VAL ARG ILE ARG SEQRES 16 A 287 ASP ALA GLY LEU GLN VAL THR ARG PRO GLN ASN ILE LYS SEQRES 17 A 287 THR GLY THR ASN ASP THR PHE SER HIS ILE HIS ASN ARG SEQRES 18 A 287 TYR HIS ARG LYS ARG ASP THR GLN LYS CYS PHE ASN GLN SEQRES 19 A 287 LYS GLU MET THR ARG LYS ARG ASP HIS LYS THR GLY LEU SEQRES 20 A 287 ASP ASN VAL LYS TYR LYS ILE LEU LYS VAL HIS GLU MET SEQRES 21 A 287 LEU ILE ASP GLN VAL PRO VAL THR ILE LEU ASN ILE LEU SEQRES 22 A 287 LEU ASP CYS ASP VAL ASN LYS THR PRO TRP CYS ASP CYS SEQRES 23 A 287 SER HET UDP A 312 25 HET MPD A 313 8 HET MN A 314 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MN MANGANESE (II) ION FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 MPD C6 H14 O2 FORMUL 4 MN MN 2+ FORMUL 5 HOH *224(H2 O) HELIX 1 1 ARG A 86 GLN A 104 1 19 HELIX 2 2 ASN A 122 ALA A 134 1 13 HELIX 3 3 ARG A 191 MET A 197 1 7 HELIX 4 4 LEU A 209 ALA A 221 1 13 HELIX 5 5 ASN A 257 ARG A 263 1 7 HELIX 6 6 GLY A 270 VAL A 274 5 5 HELIX 7 7 THR A 305 ASP A 309 5 5 SHEET 1 A 7 LEU A 166 HIS A 167 0 SHEET 2 A 7 ILE A 186 ARG A 190 -1 O LEU A 188 N LEU A 166 SHEET 3 A 7 TYR A 140 HIS A 144 -1 N MET A 143 O LEU A 187 SHEET 4 A 7 LYS A 76 PHE A 83 1 N LEU A 80 O ALA A 142 SHEET 5 A 7 ALA A 107 GLN A 115 1 O LEU A 113 N VAL A 81 SHEET 6 A 7 VAL A 289 LEU A 298 1 O THR A 292 N VAL A 112 SHEET 7 A 7 TYR A 276 ILE A 286 -1 N LYS A 277 O LEU A 297 SHEET 1 B 2 LEU A 148 PRO A 150 0 SHEET 2 B 2 PHE A 239 HIS A 241 -1 O SER A 240 N LEU A 149 SSBOND 1 CYS A 255 CYS A 310 1555 1555 2.08 SSBOND 2 CYS A 300 CYS A 308 1555 1555 2.10 LINK O1B UDP A 312 MN MN A 314 1555 1555 2.00 LINK OD2 ASP A 147 MN MN A 314 1555 1555 2.12 LINK O1A UDP A 312 MN MN A 314 1555 1555 2.20 LINK ND1 HIS A 243 MN MN A 314 1555 1555 2.25 LINK NE2 HIS A 241 MN MN A 314 1555 1555 2.26 LINK MN MN A 314 O HOH A 386 1555 1555 2.32 SITE 1 AC1 20 HOH A 7 PRO A 82 PHE A 83 ARG A 84 SITE 2 AC1 20 ARG A 86 PHE A 121 ASP A 145 VAL A 146 SITE 3 AC1 20 ASP A 147 TYR A 177 TRP A 207 HIS A 241 SITE 4 AC1 20 HIS A 243 ARG A 250 MPD A 313 MN A 314 SITE 5 AC1 20 HOH A 328 HOH A 349 HOH A 372 HOH A 421 SITE 1 AC2 12 HOH A 22 ARG A 123 TYR A 177 PHE A 182 SITE 2 AC2 12 TRP A 207 GLY A 208 GLU A 210 ASP A 211 SITE 3 AC2 12 UDP A 312 HOH A 329 HOH A 483 HOH A 498 SITE 1 AC3 5 ASP A 147 HIS A 241 HIS A 243 UDP A 312 SITE 2 AC3 5 HOH A 386 CRYST1 81.835 81.835 133.656 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007482 0.00000 MASTER 380 0 3 7 9 0 10 6 0 0 0 23 END