HEADER HYDROLASE/HYDROLASE INHIBITOR 01-FEB-10 3LMS TITLE STRUCTURE OF HUMAN ACTIVATED THROMBIN-ACTIVATABLE FIBRINOLYSIS TITLE 2 INHIBITOR, TAFIA, IN COMPLEX WITH TICK-DERIVED FUNNELIN INHIBITOR, TITLE 3 TCI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE B2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAFI, CARBOXYPEPTIDASE U, CPU, THROMBIN-ACTIVABLE COMPND 5 FIBRINOLYSIS INHIBITOR, PLASMA CARBOXYPEPTIDASE B, PCPB; COMPND 6 EC: 3.4.17.20; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CARBOXYPEPTIDASE INHIBITOR; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: TICK-DERIVED FUNNELIN INHIBITOR, TCI; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD SERUM; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: RHIPICEPHALUS BURSA; SOURCE 8 ORGANISM_TAXID: 67831; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PBAT-4-OMPA KEYWDS FIBRINOLYSIS, COGAULATION, FUNNELIN, ALPHA-BETA-HYDROLASE, KEYWDS 2 METALLOPEPTIDASE, ALTERNATIVE SPLICING, CARBOXYPEPTIDASE, DISULFIDE KEYWDS 3 BOND, GLYCOPROTEIN, HYDROLASE, METAL-BINDING, METALLOPROTEASE, KEYWDS 4 POLYMORPHISM, PROTEASE, SECRETED, ZINC, ZYMOGEN, BLOOD COAGULATION, KEYWDS 5 METALLOENZYME INHIBITOR, METALLOPROTEASE INHIBITOR, HYDROLASE- KEYWDS 6 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.SANGLAS,J.L.AROLAS,Z.VALNICKOVA,F.X.AVILES,J.J.ENGHILD,F.X.GOMIS- AUTHOR 2 RUTH REVDAT 3 01-NOV-17 3LMS 1 REMARK REVDAT 2 02-JUN-10 3LMS 1 JRNL REVDAT 1 16-FEB-10 3LMS 0 JRNL AUTH L.SANGLAS,J.L.AROLAS,Z.VALNICKOVA,F.X.AVILES,J.J.ENGHILD, JRNL AUTH 2 F.X.GOMIS-RUTH JRNL TITL INSIGHTS INTO THE MOLECULAR INACTIVATION MECHANISM OF HUMAN JRNL TITL 2 ACTIVATED THROMBIN-ACTIVATABLE FIBRINOLYSIS INHIBITOR JRNL REF J.THROMB.HAEMOST. V. 8 1056 2010 JRNL REFN ISSN 1538-7933 JRNL PMID 20088943 JRNL DOI 10.1111/J.1538-7836.2010.03740.X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0046 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3066 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.24000 REMARK 3 B12 (A**2) : 0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.902 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3190 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2188 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4306 ; 1.280 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5293 ; 0.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 6.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;31.660 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;16.371 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.278 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3526 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1905 ; 0.601 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 781 ; 0.167 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3059 ; 1.099 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1285 ; 1.659 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1247 ; 2.491 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 308 REMARK 3 RESIDUE RANGE : A 309 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1287 81.0928 38.5996 REMARK 3 T TENSOR REMARK 3 T11: 0.0819 T22: 0.1248 REMARK 3 T33: 0.1106 T12: 0.0750 REMARK 3 T13: -0.0487 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.1840 L22: 1.2266 REMARK 3 L33: 1.7081 L12: -0.2558 REMARK 3 L13: -0.2985 L23: 0.0972 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: -0.1224 S13: -0.0450 REMARK 3 S21: 0.1896 S22: 0.0155 S23: -0.2802 REMARK 3 S31: 0.2937 S32: 0.4494 S33: -0.0459 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5788 74.6258 60.2964 REMARK 3 T TENSOR REMARK 3 T11: 0.4540 T22: 0.1951 REMARK 3 T33: 0.1183 T12: 0.0170 REMARK 3 T13: 0.0354 T23: 0.0759 REMARK 3 L TENSOR REMARK 3 L11: 2.1107 L22: 4.5375 REMARK 3 L33: 3.5244 L12: -0.2332 REMARK 3 L13: 0.5437 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: -0.4890 S13: -0.3208 REMARK 3 S21: 0.9074 S22: 0.0856 S23: 0.0880 REMARK 3 S31: 0.7175 S32: -0.0477 S33: -0.1710 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6204 68.9823 38.7337 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 0.0193 REMARK 3 T33: 0.1705 T12: -0.0127 REMARK 3 T13: 0.0264 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.5798 L22: 3.1545 REMARK 3 L33: 6.4428 L12: 1.7518 REMARK 3 L13: 0.5719 L23: -0.6841 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: -0.0034 S13: -0.3415 REMARK 3 S21: 0.4259 S22: -0.0168 S23: 0.1770 REMARK 3 S31: 0.6782 S32: -0.1125 S33: -0.0594 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 600 REMARK 3 RESIDUE RANGE : B 502 B 594 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8220 81.5507 40.9963 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.0687 REMARK 3 T33: 0.0940 T12: 0.0356 REMARK 3 T13: -0.0220 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 1.3571 L22: 0.7426 REMARK 3 L33: 1.0964 L12: -0.1545 REMARK 3 L13: -0.4618 L23: 0.5447 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: -0.1214 S13: -0.0447 REMARK 3 S21: 0.1951 S22: -0.0542 S23: -0.0508 REMARK 3 S31: 0.2666 S32: 0.1588 S33: 0.0951 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3LMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) CHANNEL-CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28241 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62800 REMARK 200 R SYM FOR SHELL (I) : 0.62800 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3D4U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KBR, 0.1M CACODYLATE, 15% PEG REMARK 280 4000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.02333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.04667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.04667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.02333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 6 -68.38 -126.02 REMARK 500 LYS A 44 13.62 89.22 REMARK 500 LYS A 122 -49.46 -130.98 REMARK 500 ASN A 129 -159.14 -76.03 REMARK 500 GLU A 153 -153.37 -96.62 REMARK 500 SER A 199 -1.02 126.12 REMARK 500 ASN A2356 43.53 -100.00 REMARK 500 LEU A 247 -82.88 -123.64 REMARK 500 ALA A 250 82.13 -159.48 REMARK 500 LEU A 271 -168.55 -77.48 REMARK 500 ASP A 273 -150.26 -107.05 REMARK 500 ARG A 284 -36.68 -37.60 REMARK 500 PHE B 8 -153.10 -106.68 REMARK 500 THR B 29 -121.44 -99.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 309 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 HIS A 196 ND1 102.3 REMARK 620 3 LEU B 74 OXT 136.0 101.7 REMARK 620 4 GLU A 72 OE2 91.9 149.1 85.7 REMARK 620 5 LEU B 74 O 81.9 125.7 54.1 83.0 REMARK 620 6 GLU A 72 OE1 109.7 93.2 105.2 56.1 137.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D4U RELATED DB: PDB REMARK 900 BOVINE ORTHOLOG. REMARK 900 RELATED ID: 3D6V RELATED DB: PDB REMARK 900 BOVINE TAFIA PRECURSOR, TAFI. REMARK 900 RELATED ID: 3D66 RELATED DB: PDB REMARK 900 HUMAN TAFIA PRECURSOR, TAFI. DBREF 3LMS A 4 308 UNP Q96IY4 CBPB2_HUMAN 115 423 DBREF 3LMS B 1 74 UNP Q5EPH2 TCI1_RHIBU 23 96 SEQRES 1 A 309 ALA SER ALA SER TYR TYR GLU GLN TYR HIS SER LEU ASN SEQRES 2 A 309 GLU ILE TYR SER TRP ILE GLU PHE ILE THR GLU ARG HIS SEQRES 3 A 309 PRO ASP MET LEU THR LYS ILE HIS ILE GLY SER SER PHE SEQRES 4 A 309 GLU LYS TYR PRO LEU TYR VAL LEU LYS VAL SER GLY LYS SEQRES 5 A 309 GLU GLN ALA ALA LYS ASN ALA ILE TRP ILE ASP CYS GLY SEQRES 6 A 309 ILE HIS ALA ARG GLU TRP ILE SER PRO ALA PHE CYS LEU SEQRES 7 A 309 TRP PHE ILE GLY HIS ILE THR GLN PHE TYR GLY ILE ILE SEQRES 8 A 309 GLY GLN TYR THR ASN LEU LEU ARG LEU VAL ASP PHE TYR SEQRES 9 A 309 VAL MET PRO VAL VAL ASN VAL ASP GLY TYR ASP TYR SER SEQRES 10 A 309 TRP LYS LYS ASN ARG MET TRP ARG LYS ASN ARG SER PHE SEQRES 11 A 309 TYR ALA ASN ASN HIS CYS ILE GLY THR ASP LEU ASN ARG SEQRES 12 A 309 ASN PHE ALA SER LYS HIS TRP CYS GLU GLU GLY ALA SER SEQRES 13 A 309 SER SER SER CYS SER GLU THR TYR CYS GLY LEU TYR PRO SEQRES 14 A 309 GLU SER GLU PRO GLU VAL LYS ALA VAL ALA SER PHE LEU SEQRES 15 A 309 ARG ARG ASN ILE ASN GLN ILE LYS ALA TYR ILE SER MET SEQRES 16 A 309 HIS SER TYR SER GLN HIS ILE VAL PHE PRO TYR SER TYR SEQRES 17 A 309 THR ARG SER LYS SER LYS ASP HIS GLU GLU LEU SER LEU SEQRES 18 A 309 VAL ALA SER GLU ALA VAL ARG ALA ILE GLU LYS THR SER SEQRES 19 A 309 LYS ASN THR ARG TYR THR HIS GLY HIS GLY SER GLU THR SEQRES 20 A 309 LEU TYR LEU ALA PRO GLY GLY GLY ASP ASP TRP ILE TYR SEQRES 21 A 309 ASP LEU GLY ILE LYS TYR SER PHE THR ILE GLU LEU ARG SEQRES 22 A 309 ASP THR GLY THR TYR GLY PHE LEU LEU PRO GLU ARG TYR SEQRES 23 A 309 ILE LYS PRO THR CYS ARG GLU ALA PHE ALA ALA VAL SER SEQRES 24 A 309 LYS ILE ALA TRP HIS VAL ILE ARG ASN VAL SEQRES 1 B 74 ASN GLU CYS VAL SER LYS GLY PHE GLY CYS LEU PRO GLN SEQRES 2 B 74 SER ASP CYS PRO GLN GLU ALA ARG LEU SER TYR GLY GLY SEQRES 3 B 74 CYS SER THR VAL CYS CYS ASP LEU SER LYS LEU THR GLY SEQRES 4 B 74 CYS LYS GLY LYS GLY GLY GLU CYS ASN PRO LEU ASP ARG SEQRES 5 B 74 GLN CYS LYS GLU LEU GLN ALA GLU SER ALA SER CYS GLY SEQRES 6 B 74 LYS GLY GLN LYS CYS CYS VAL TRP LEU HET ZN A 309 1 HET GLY A 501 5 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET CL A 506 1 HET CL A 507 1 HET CA A 509 1 HET K A 510 1 HET K A 511 1 HET GOL B 502 6 HET CL B 508 1 HETNAM ZN ZINC ION HETNAM GLY GLYCINE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN ZN 2+ FORMUL 4 GLY C2 H5 N O2 FORMUL 5 GOL 4(C3 H8 O3) FORMUL 8 CL 3(CL 1-) FORMUL 10 CA CA 2+ FORMUL 11 K 2(K 1+) FORMUL 15 HOH *88(H2 O) HELIX 1 1 ALA A 6 GLN A 11 5 6 HELIX 2 2 SER A 14 HIS A 29 1 16 HELIX 3 3 TRP A 73 PHE A 89 1 17 HELIX 4 4 ILE A 93 LEU A 102 1 10 HELIX 5 5 ASN A 112 LYS A 122 1 11 HELIX 6 6 ASP A 142 ASN A 146 5 5 HELIX 7 7 GLU A 173 ASN A 186 1 14 HELIX 8 8 ASP A 215 SER A 234 1 20 HELIX 9 9 GLY A 243 LEU A 247 1 5 HELIX 10 10 GLY A 253 LEU A 261 1 9 HELIX 11 11 PRO A 282 ARG A 284 5 3 HELIX 12 12 TYR A 285 VAL A 308 1 24 HELIX 13 13 ASN B 1 LYS B 6 1 6 HELIX 14 14 PRO B 12 CYS B 16 5 5 HELIX 15 15 PRO B 17 GLU B 19 5 3 HELIX 16 16 LEU B 34 LEU B 37 5 4 HELIX 17 17 CYS B 40 GLY B 44 5 5 HELIX 18 18 GLN B 58 CYS B 64 5 7 SHEET 1 A 8 LEU A 33 SER A 40 0 SHEET 2 A 8 PRO A 46 VAL A 52 -1 O LEU A 47 N ILE A 38 SHEET 3 A 8 VAL A 103 MET A 108 -1 O VAL A 107 N LEU A 50 SHEET 4 A 8 ASN A 60 CYS A 66 1 N ILE A 64 O TYR A 106 SHEET 5 A 8 ILE A 189 HIS A 196 1 O MET A 195 N ASP A 65 SHEET 6 A 8 TYR A 265 GLU A 270 1 O PHE A 267 N TYR A 192 SHEET 7 A 8 HIS A 201 PHE A 204 -1 N HIS A 201 O GLU A 270 SHEET 8 A 8 THR A 239 HIS A 242 1 O THR A 239 N ILE A 202 SHEET 1 B 3 GLY B 9 LEU B 11 0 SHEET 2 B 3 VAL B 30 CYS B 32 -1 O CYS B 32 N GLY B 9 SHEET 3 B 3 ARG B 21 LEU B 22 -1 N LEU B 22 O CYS B 31 SHEET 1 C 3 GLU B 46 PRO B 49 0 SHEET 2 C 3 GLN B 68 VAL B 72 -1 O LYS B 69 N ASN B 48 SHEET 3 C 3 LYS B 55 GLU B 56 -1 N LYS B 55 O VAL B 72 SSBOND 1 CYS A 66 CYS A 79 1555 1555 2.01 SSBOND 2 CYS A 138 CYS A 161 1555 1555 2.05 SSBOND 3 CYS A 152 CYS A 166 1555 1555 2.07 SSBOND 4 CYS B 3 CYS B 31 1555 1555 2.04 SSBOND 5 CYS B 10 CYS B 27 1555 1555 2.07 SSBOND 6 CYS B 16 CYS B 32 1555 1555 2.06 SSBOND 7 CYS B 40 CYS B 70 1555 1555 2.06 SSBOND 8 CYS B 47 CYS B 64 1555 1555 2.09 SSBOND 9 CYS B 54 CYS B 71 1555 1555 2.10 LINK ND1 HIS A 69 ZN ZN A 309 1555 1555 2.09 LINK ND1 HIS A 196 ZN ZN A 309 1555 1555 2.12 LINK OXT LEU B 74 ZN ZN A 309 1555 1555 2.15 LINK OE2 GLU A 72 ZN ZN A 309 1555 1555 2.29 LINK O LEU B 74 ZN ZN A 309 1555 1555 2.38 LINK OE1 GLU A 72 ZN ZN A 309 1555 1555 2.40 CISPEP 1 SER A 197 TYR A 198 0 -1.09 CISPEP 2 PRO A 205 TYR A 206 0 6.04 CISPEP 3 ARG A 272 ASP A 273 0 2.61 SITE 1 AC1 4 HIS A 69 GLU A 72 HIS A 196 LEU B 74 SITE 1 AC2 6 HIS A 69 ARG A 127 ASN A 144 ARG A 145 SITE 2 AC2 6 TYR A 248 LEU B 74 SITE 1 AC3 4 GLY B 39 CYS B 40 LYS B 41 SER B 63 SITE 1 AC4 7 PHE A 132 ILE A 139 CYS A 166 GLY A 167 SITE 2 AC4 7 HOH A 526 HOH A 528 HOH A 530 SITE 1 AC5 4 SER A 5 GLY A 84 HIS A 85 GLN A 88 SITE 1 AC6 7 TRP A 73 ARG A 124 PHE A 279 LEU A 280 SITE 2 AC6 7 LEU A 281 GLY B 7 PHE B 8 SITE 1 AC7 1 TYR A 118 SITE 1 AC8 3 HIS A 137 SER A 160 CA A 509 SITE 1 AC9 2 CA A 509 SER B 28 SITE 1 BC1 5 LYS A 122 SER A 159 CYS A 161 CL A 507 SITE 2 BC1 5 CL B 508 SITE 1 BC2 2 GLN A 95 ARG A 306 SITE 1 BC3 2 ASN A 16 GLY B 67 CRYST1 157.180 157.180 57.070 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006362 0.003673 0.000000 0.00000 SCALE2 0.000000 0.007346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017522 0.00000 MASTER 423 0 12 18 14 0 16 6 0 0 0 30 END