HEADER PROTEIN BINDING 27-JAN-10 3LKU TITLE CRYSTAL STRUCTURE OF S. CEREVISIAE GET4 IN COMPLEX WITH AN N-TERMINAL TITLE 2 FRAGMENT OF GET5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0363 PROTEIN YOR164C; COMPND 3 CHAIN: A, C, E; COMPND 4 FRAGMENT: UNP RESIDUES 11-300; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN-LIKE PROTEIN MDY2; COMPND 8 CHAIN: B, D, F; COMPND 9 FRAGMENT: UNP RESIDUES 3-56; COMPND 10 SYNONYM: MATING-DEFICIENT PROTEIN 2, TRANSLATION MACHINERY-ASSOCIATED COMPND 11 PROTEIN 24; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: O3580, YOR164C, YOR164C/GET4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET33B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: MDY2, TMA24, YOL111C, YOL111C/GET5; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET33B KEYWDS ALPHA HELICAL REPEAT, TPR-LIKE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.W.CHARTRON,W.M.CLEMONS JR. REVDAT 2 21-JUL-10 3LKU 1 JRNL REVDAT 1 23-JUN-10 3LKU 0 JRNL AUTH J.W.CHARTRON,C.J.SULOWAY,M.ZASLAVER,W.M.CLEMONS JRNL TITL STRUCTURAL CHARACTERIZATION OF THE GET4/GET5 COMPLEX AND ITS JRNL TITL 2 INTERACTION WITH GET3. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 12127 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20554915 JRNL DOI 10.1073/PNAS.1006036107 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0050 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.98000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -2.97000 REMARK 3 B12 (A**2) : 0.99000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.356 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.123 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8653 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11694 ; 1.517 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1017 ; 5.373 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 424 ;39.805 ;24.599 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1536 ;16.847 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1272 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6520 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 299 REMARK 3 RESIDUE RANGE : B 3 B 54 REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6116 14.0699 77.0699 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0282 REMARK 3 T33: 0.1308 T12: 0.0162 REMARK 3 T13: -0.0163 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.1000 L22: 0.6200 REMARK 3 L33: 5.5087 L12: 0.1420 REMARK 3 L13: -1.1421 L23: -0.6531 REMARK 3 S TENSOR REMARK 3 S11: 0.0763 S12: 0.1416 S13: 0.0592 REMARK 3 S21: -0.1331 S22: 0.0216 S23: 0.0921 REMARK 3 S31: -0.0722 S32: -0.2973 S33: -0.0979 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 297 REMARK 3 RESIDUE RANGE : D 4 D 54 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7391 49.2148 85.9925 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: 0.0679 REMARK 3 T33: 0.1236 T12: -0.0614 REMARK 3 T13: -0.0063 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.9158 L22: 1.5838 REMARK 3 L33: 4.8156 L12: -0.0936 REMARK 3 L13: 0.4844 L23: -0.4345 REMARK 3 S TENSOR REMARK 3 S11: -0.1367 S12: 0.1480 S13: -0.0098 REMARK 3 S21: -0.2394 S22: 0.2350 S23: -0.0641 REMARK 3 S31: 0.1898 S32: 0.0843 S33: -0.0983 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 9 E 299 REMARK 3 RESIDUE RANGE : F 3 F 56 REMARK 3 RESIDUE RANGE : E 1 E 1 REMARK 3 ORIGIN FOR THE GROUP (A): -38.8930 35.5410 67.6176 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: 0.1518 REMARK 3 T33: 0.2183 T12: -0.0510 REMARK 3 T13: -0.0320 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.1642 L22: 1.3404 REMARK 3 L33: 6.4231 L12: 0.0541 REMARK 3 L13: -0.5205 L23: 0.6392 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: 0.2720 S13: -0.0302 REMARK 3 S21: -0.0571 S22: 0.2322 S23: -0.0246 REMARK 3 S31: -0.1826 S32: 0.3534 S33: -0.2033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED DIRECT SAD REFINEMENT TARGET USING REMARK 3 SELENOMETHIOINE REMARK 4 REMARK 4 3LKU COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-10. REMARK 100 THE RCSB ID CODE IS RCSB057400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97862 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.100 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 6000, 0.1M BIS-TRIS, 0.14M REMARK 280 AMMONIUM SULFATE, 0.01M L-PROLINE, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.60367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.20733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 113.20733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.60367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 LYS A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 300 REMARK 465 ASN B 55 REMARK 465 ARG B 56 REMARK 465 PHE C 299 REMARK 465 LEU C 300 REMARK 465 THR D 3 REMARK 465 ASN D 55 REMARK 465 ARG D 56 REMARK 465 LEU E 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU E 152 O HOH E 5 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 68 70.48 -100.11 REMARK 500 ASN A 232 48.30 39.60 REMARK 500 TYR A 270 74.62 -109.13 REMARK 500 ASP C 181 79.09 -105.26 REMARK 500 TYR C 270 73.85 -109.28 REMARK 500 TYR E 270 74.22 -109.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRO E 1 DBREF 3LKU A 11 300 UNP Q12125 YO164_YEAST 11 300 DBREF 3LKU B 3 56 UNP Q12285 MDY2_YEAST 3 56 DBREF 3LKU C 11 300 UNP Q12125 YO164_YEAST 11 300 DBREF 3LKU D 3 56 UNP Q12285 MDY2_YEAST 3 56 DBREF 3LKU E 11 300 UNP Q12125 YO164_YEAST 11 300 DBREF 3LKU F 3 56 UNP Q12285 MDY2_YEAST 3 56 SEQADV 3LKU MSE A 9 UNP Q12125 EXPRESSION TAG SEQADV 3LKU GLY A 10 UNP Q12125 EXPRESSION TAG SEQADV 3LKU MSE C 9 UNP Q12125 EXPRESSION TAG SEQADV 3LKU GLY C 10 UNP Q12125 EXPRESSION TAG SEQADV 3LKU MSE E 9 UNP Q12125 EXPRESSION TAG SEQADV 3LKU GLY E 10 UNP Q12125 EXPRESSION TAG SEQRES 1 A 292 MSE GLY ALA LYS LEU ALA LYS THR LEU GLN ARG PHE GLU SEQRES 2 A 292 ASN LYS ILE LYS ALA GLY ASP TYR TYR GLU ALA HIS GLN SEQRES 3 A 292 THR LEU ARG THR ILE ALA ASN ARG TYR VAL ARG SER LYS SEQRES 4 A 292 SER TYR GLU HIS ALA ILE GLU LEU ILE SER GLN GLY ALA SEQRES 5 A 292 LEU SER PHE LEU LYS ALA LYS GLN GLY GLY SER GLY THR SEQRES 6 A 292 ASP LEU ILE PHE TYR LEU LEU GLU VAL TYR ASP LEU ALA SEQRES 7 A 292 GLU VAL LYS VAL ASP ASP ILE SER VAL ALA ARG LEU VAL SEQRES 8 A 292 ARG LEU ILE ALA GLU LEU ASP PRO SER GLU PRO ASN LEU SEQRES 9 A 292 LYS ASP VAL ILE THR GLY MSE ASN ASN TRP SER ILE LYS SEQRES 10 A 292 PHE SER GLU TYR LYS PHE GLY ASP PRO TYR LEU HIS ASN SEQRES 11 A 292 THR ILE GLY SER LYS LEU LEU GLU GLY ASP PHE VAL TYR SEQRES 12 A 292 GLU ALA GLU ARG TYR PHE MSE LEU GLY THR HIS ASP SER SEQRES 13 A 292 MSE ILE LYS TYR VAL ASP LEU LEU TRP ASP TRP LEU CYS SEQRES 14 A 292 GLN VAL ASP ASP ILE GLU ASP SER THR VAL ALA GLU PHE SEQRES 15 A 292 PHE SER ARG LEU VAL PHE ASN TYR LEU PHE ILE SER ASN SEQRES 16 A 292 ILE SER PHE ALA HIS GLU SER LYS ASP ILE PHE LEU GLU SEQRES 17 A 292 ARG PHE ILE GLU LYS PHE HIS PRO LYS TYR GLU LYS ILE SEQRES 18 A 292 ASP LYS ASN GLY TYR GLU ILE VAL PHE PHE GLU ASP TYR SEQRES 19 A 292 SER ASP LEU ASN PHE LEU GLN LEU LEU LEU ILE THR CYS SEQRES 20 A 292 GLN THR LYS ASP LYS SER TYR PHE LEU ASN LEU LYS ASN SEQRES 21 A 292 HIS TYR LEU ASP PHE SER GLN ALA TYR LYS SER GLU LEU SEQRES 22 A 292 GLU PHE LEU GLY GLN GLU TYR PHE ASN ILE VAL ALA PRO SEQRES 23 A 292 LYS GLN THR ASN PHE LEU SEQRES 1 B 54 THR SER ALA SER GLY PRO GLU HIS GLU PHE VAL SER LYS SEQRES 2 B 54 PHE LEU THR LEU ALA THR LEU THR GLU PRO LYS LEU PRO SEQRES 3 B 54 LYS SER TYR THR LYS PRO LEU LYS ASP VAL THR ASN LEU SEQRES 4 B 54 GLY VAL PRO LEU PRO THR LEU LYS TYR LYS TYR LYS GLN SEQRES 5 B 54 ASN ARG SEQRES 1 C 292 MSE GLY ALA LYS LEU ALA LYS THR LEU GLN ARG PHE GLU SEQRES 2 C 292 ASN LYS ILE LYS ALA GLY ASP TYR TYR GLU ALA HIS GLN SEQRES 3 C 292 THR LEU ARG THR ILE ALA ASN ARG TYR VAL ARG SER LYS SEQRES 4 C 292 SER TYR GLU HIS ALA ILE GLU LEU ILE SER GLN GLY ALA SEQRES 5 C 292 LEU SER PHE LEU LYS ALA LYS GLN GLY GLY SER GLY THR SEQRES 6 C 292 ASP LEU ILE PHE TYR LEU LEU GLU VAL TYR ASP LEU ALA SEQRES 7 C 292 GLU VAL LYS VAL ASP ASP ILE SER VAL ALA ARG LEU VAL SEQRES 8 C 292 ARG LEU ILE ALA GLU LEU ASP PRO SER GLU PRO ASN LEU SEQRES 9 C 292 LYS ASP VAL ILE THR GLY MSE ASN ASN TRP SER ILE LYS SEQRES 10 C 292 PHE SER GLU TYR LYS PHE GLY ASP PRO TYR LEU HIS ASN SEQRES 11 C 292 THR ILE GLY SER LYS LEU LEU GLU GLY ASP PHE VAL TYR SEQRES 12 C 292 GLU ALA GLU ARG TYR PHE MSE LEU GLY THR HIS ASP SER SEQRES 13 C 292 MSE ILE LYS TYR VAL ASP LEU LEU TRP ASP TRP LEU CYS SEQRES 14 C 292 GLN VAL ASP ASP ILE GLU ASP SER THR VAL ALA GLU PHE SEQRES 15 C 292 PHE SER ARG LEU VAL PHE ASN TYR LEU PHE ILE SER ASN SEQRES 16 C 292 ILE SER PHE ALA HIS GLU SER LYS ASP ILE PHE LEU GLU SEQRES 17 C 292 ARG PHE ILE GLU LYS PHE HIS PRO LYS TYR GLU LYS ILE SEQRES 18 C 292 ASP LYS ASN GLY TYR GLU ILE VAL PHE PHE GLU ASP TYR SEQRES 19 C 292 SER ASP LEU ASN PHE LEU GLN LEU LEU LEU ILE THR CYS SEQRES 20 C 292 GLN THR LYS ASP LYS SER TYR PHE LEU ASN LEU LYS ASN SEQRES 21 C 292 HIS TYR LEU ASP PHE SER GLN ALA TYR LYS SER GLU LEU SEQRES 22 C 292 GLU PHE LEU GLY GLN GLU TYR PHE ASN ILE VAL ALA PRO SEQRES 23 C 292 LYS GLN THR ASN PHE LEU SEQRES 1 D 54 THR SER ALA SER GLY PRO GLU HIS GLU PHE VAL SER LYS SEQRES 2 D 54 PHE LEU THR LEU ALA THR LEU THR GLU PRO LYS LEU PRO SEQRES 3 D 54 LYS SER TYR THR LYS PRO LEU LYS ASP VAL THR ASN LEU SEQRES 4 D 54 GLY VAL PRO LEU PRO THR LEU LYS TYR LYS TYR LYS GLN SEQRES 5 D 54 ASN ARG SEQRES 1 E 292 MSE GLY ALA LYS LEU ALA LYS THR LEU GLN ARG PHE GLU SEQRES 2 E 292 ASN LYS ILE LYS ALA GLY ASP TYR TYR GLU ALA HIS GLN SEQRES 3 E 292 THR LEU ARG THR ILE ALA ASN ARG TYR VAL ARG SER LYS SEQRES 4 E 292 SER TYR GLU HIS ALA ILE GLU LEU ILE SER GLN GLY ALA SEQRES 5 E 292 LEU SER PHE LEU LYS ALA LYS GLN GLY GLY SER GLY THR SEQRES 6 E 292 ASP LEU ILE PHE TYR LEU LEU GLU VAL TYR ASP LEU ALA SEQRES 7 E 292 GLU VAL LYS VAL ASP ASP ILE SER VAL ALA ARG LEU VAL SEQRES 8 E 292 ARG LEU ILE ALA GLU LEU ASP PRO SER GLU PRO ASN LEU SEQRES 9 E 292 LYS ASP VAL ILE THR GLY MSE ASN ASN TRP SER ILE LYS SEQRES 10 E 292 PHE SER GLU TYR LYS PHE GLY ASP PRO TYR LEU HIS ASN SEQRES 11 E 292 THR ILE GLY SER LYS LEU LEU GLU GLY ASP PHE VAL TYR SEQRES 12 E 292 GLU ALA GLU ARG TYR PHE MSE LEU GLY THR HIS ASP SER SEQRES 13 E 292 MSE ILE LYS TYR VAL ASP LEU LEU TRP ASP TRP LEU CYS SEQRES 14 E 292 GLN VAL ASP ASP ILE GLU ASP SER THR VAL ALA GLU PHE SEQRES 15 E 292 PHE SER ARG LEU VAL PHE ASN TYR LEU PHE ILE SER ASN SEQRES 16 E 292 ILE SER PHE ALA HIS GLU SER LYS ASP ILE PHE LEU GLU SEQRES 17 E 292 ARG PHE ILE GLU LYS PHE HIS PRO LYS TYR GLU LYS ILE SEQRES 18 E 292 ASP LYS ASN GLY TYR GLU ILE VAL PHE PHE GLU ASP TYR SEQRES 19 E 292 SER ASP LEU ASN PHE LEU GLN LEU LEU LEU ILE THR CYS SEQRES 20 E 292 GLN THR LYS ASP LYS SER TYR PHE LEU ASN LEU LYS ASN SEQRES 21 E 292 HIS TYR LEU ASP PHE SER GLN ALA TYR LYS SER GLU LEU SEQRES 22 E 292 GLU PHE LEU GLY GLN GLU TYR PHE ASN ILE VAL ALA PRO SEQRES 23 E 292 LYS GLN THR ASN PHE LEU SEQRES 1 F 54 THR SER ALA SER GLY PRO GLU HIS GLU PHE VAL SER LYS SEQRES 2 F 54 PHE LEU THR LEU ALA THR LEU THR GLU PRO LYS LEU PRO SEQRES 3 F 54 LYS SER TYR THR LYS PRO LEU LYS ASP VAL THR ASN LEU SEQRES 4 F 54 GLY VAL PRO LEU PRO THR LEU LYS TYR LYS TYR LYS GLN SEQRES 5 F 54 ASN ARG MODRES 3LKU MSE A 119 MET SELENOMETHIONINE MODRES 3LKU MSE A 158 MET SELENOMETHIONINE MODRES 3LKU MSE A 165 MET SELENOMETHIONINE MODRES 3LKU MSE C 9 MET SELENOMETHIONINE MODRES 3LKU MSE C 119 MET SELENOMETHIONINE MODRES 3LKU MSE C 158 MET SELENOMETHIONINE MODRES 3LKU MSE C 165 MET SELENOMETHIONINE MODRES 3LKU MSE E 9 MET SELENOMETHIONINE MODRES 3LKU MSE E 119 MET SELENOMETHIONINE MODRES 3LKU MSE E 158 MET SELENOMETHIONINE MODRES 3LKU MSE E 165 MET SELENOMETHIONINE HET MSE A 119 8 HET MSE A 158 8 HET MSE A 165 8 HET MSE C 9 8 HET MSE C 119 8 HET MSE C 158 8 HET MSE C 165 8 HET MSE E 9 8 HET MSE E 119 8 HET MSE E 158 8 HET MSE E 165 8 HET PRO A 1 8 HET PRO E 1 8 HETNAM MSE SELENOMETHIONINE HETNAM PRO PROLINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 7 PRO 2(C5 H9 N O2) FORMUL 9 HOH *84(H2 O) HELIX 1 1 ALA A 14 ALA A 26 1 13 HELIX 2 2 ASP A 28 SER A 46 1 19 HELIX 3 3 SER A 48 ALA A 66 1 19 HELIX 4 4 GLN A 68 ALA A 86 1 19 HELIX 5 5 ASP A 91 LEU A 105 1 15 HELIX 6 6 ASN A 111 PHE A 126 1 16 HELIX 7 7 ASP A 133 GLY A 147 1 15 HELIX 8 8 PHE A 149 LEU A 159 1 11 HELIX 9 9 THR A 161 VAL A 179 1 19 HELIX 10 10 GLU A 183 ILE A 201 1 19 HELIX 11 11 ASN A 203 HIS A 223 1 21 HELIX 12 12 TYR A 242 LYS A 258 1 17 HELIX 13 13 ASP A 259 TYR A 270 1 12 HELIX 14 14 TYR A 270 TYR A 277 1 8 HELIX 15 15 TYR A 277 ASN A 290 1 14 HELIX 16 16 THR B 3 ALA B 5 5 3 HELIX 17 17 SER B 6 THR B 21 1 16 HELIX 18 18 PRO B 34 VAL B 38 5 5 HELIX 19 19 MSE C 9 ALA C 26 1 18 HELIX 20 20 ASP C 28 SER C 46 1 19 HELIX 21 21 SER C 48 ALA C 66 1 19 HELIX 22 22 GLN C 68 ALA C 86 1 19 HELIX 23 23 ASP C 91 LEU C 105 1 15 HELIX 24 24 ASN C 111 PHE C 126 1 16 HELIX 25 25 ASP C 133 GLY C 147 1 15 HELIX 26 26 PHE C 149 LEU C 159 1 11 HELIX 27 27 THR C 161 VAL C 179 1 19 HELIX 28 28 GLU C 183 ILE C 201 1 19 HELIX 29 29 ASN C 203 HIS C 223 1 21 HELIX 30 30 TYR C 242 LYS C 258 1 17 HELIX 31 31 ASP C 259 TYR C 270 1 12 HELIX 32 32 TYR C 270 TYR C 277 1 8 HELIX 33 33 TYR C 277 ASN C 290 1 14 HELIX 34 34 SER D 6 THR D 21 1 16 HELIX 35 35 PRO D 34 VAL D 38 5 5 HELIX 36 36 MSE E 9 ALA E 26 1 18 HELIX 37 37 ASP E 28 SER E 46 1 19 HELIX 38 38 SER E 48 ALA E 66 1 19 HELIX 39 39 GLN E 68 ALA E 86 1 19 HELIX 40 40 ASP E 91 LEU E 105 1 15 HELIX 41 41 ASN E 111 PHE E 126 1 16 HELIX 42 42 ASP E 133 GLY E 147 1 15 HELIX 43 43 PHE E 149 LEU E 159 1 11 HELIX 44 44 THR E 161 VAL E 179 1 19 HELIX 45 45 GLU E 183 ILE E 201 1 19 HELIX 46 46 ASN E 203 HIS E 223 1 21 HELIX 47 47 TYR E 242 LYS E 258 1 17 HELIX 48 48 ASP E 259 TYR E 270 1 12 HELIX 49 49 TYR E 270 TYR E 277 1 8 HELIX 50 50 TYR E 277 ASN E 290 1 14 HELIX 51 51 THR F 3 ALA F 5 5 3 HELIX 52 52 SER F 6 LEU F 22 1 17 HELIX 53 53 PRO F 34 VAL F 38 5 5 SHEET 1 A 2 TYR A 226 LYS A 231 0 SHEET 2 A 2 TYR A 234 PHE A 239 -1 O ILE A 236 N ILE A 229 SHEET 1 B 2 TYR C 226 LYS C 231 0 SHEET 2 B 2 TYR C 234 PHE C 239 -1 O ILE C 236 N ILE C 229 SHEET 1 C 2 TYR E 226 LYS E 231 0 SHEET 2 C 2 TYR E 234 PHE E 239 -1 O ILE E 236 N ILE E 229 LINK C GLY A 118 N MSE A 119 1555 1555 1.34 LINK C MSE A 119 N ASN A 120 1555 1555 1.33 LINK C PHE A 157 N MSE A 158 1555 1555 1.32 LINK C MSE A 158 N LEU A 159 1555 1555 1.32 LINK C SER A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N ILE A 166 1555 1555 1.34 LINK C MSE C 9 N GLY C 10 1555 1555 1.33 LINK C GLY C 118 N MSE C 119 1555 1555 1.33 LINK C MSE C 119 N ASN C 120 1555 1555 1.34 LINK C PHE C 157 N MSE C 158 1555 1555 1.32 LINK C MSE C 158 N LEU C 159 1555 1555 1.33 LINK C SER C 164 N MSE C 165 1555 1555 1.32 LINK C MSE C 165 N ILE C 166 1555 1555 1.34 LINK C MSE E 9 N GLY E 10 1555 1555 1.34 LINK C GLY E 118 N MSE E 119 1555 1555 1.34 LINK C MSE E 119 N ASN E 120 1555 1555 1.33 LINK C PHE E 157 N MSE E 158 1555 1555 1.32 LINK C MSE E 158 N LEU E 159 1555 1555 1.33 LINK C SER E 164 N MSE E 165 1555 1555 1.32 LINK C MSE E 165 N ILE E 166 1555 1555 1.34 SITE 1 AC1 5 SER A 48 TYR A 49 GLU A 50 HIS A 51 SITE 2 AC1 5 ASN F 55 SITE 1 AC2 4 SER E 48 TYR E 49 GLU E 50 HIS E 51 CRYST1 108.733 108.733 169.811 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009197 0.005310 0.000000 0.00000 SCALE2 0.000000 0.010620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005889 0.00000 MASTER 388 0 13 53 6 0 3 6 0 0 0 84 END