HEADER RECOMBINATION/DNA 15-DEC-09 3L2W TITLE CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) TITLE 2 INTASOME IN COMPLEX WITH MANGANESE AND GS9137 TITLE 3 (ELVITEGRAVIR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IN, P42IN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'- COMPND 8 D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A) COMPND 9 -3'; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: 19 NUCLEOTIDE PREPROCESSED PFV DONOR DNA; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'- COMPND 15 D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: 17 NUCLEOTIDE PREPROCESSED PFV DONOR DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SPUMARETROVIRUS; SOURCE 3 ORGANISM_COMMON: SFVCPZ(HU); SOURCE 4 ORGANISM_TAXID: 11963; SOURCE 5 STRAIN: HSRV2; SOURCE 6 GENE: POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: PC2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSSH6P-PFV-INFL; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, TETRAMER, DNA INTEGRATION, KEYWDS 2 ENDONUCLEASE, METAL-BINDING, MULTIFUNCTIONAL ENZYME, KEYWDS 3 NUCLEASE, NUCLEOTIDYLTRANSFERASE, NUCLEUS, TRANSFERASE, KEYWDS 4 VIRAL NUCLEOPROTEIN, VIRION, ZINC, DNA-BINDING, ZINC KEYWDS 5 BINDING, HHCC MOTIF, VIRAL PROTEIN, RECOMBINATION, KEYWDS 6 RECOMBINATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HARE,S.S.GUPTA,P.CHEREPANOV REVDAT 2 16-MAR-10 3L2W 1 JRNL REVDAT 1 09-FEB-10 3L2W 0 JRNL AUTH S.HARE,S.S.GUPTA,E.VALKOV,A.ENGELMAN,P.CHEREPANOV JRNL TITL RETROVIRAL INTASOME ASSEMBLY AND INHIBITION OF DNA JRNL TITL 2 STRAND TRANSFER JRNL REF NATURE V. 464 232 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20118915 JRNL DOI 10.1038/NATURE08784 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4151 REMARK 3 NUCLEIC ACID ATOMS : 732 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.11000 REMARK 3 B22 (A**2) : 2.11000 REMARK 3 B33 (A**2) : -4.22000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.617 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.248 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5144 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7174 ; 1.427 ; 2.159 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 5.960 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;33.398 ;23.605 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 679 ;17.635 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 811 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3639 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2657 ; 0.378 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4340 ; 0.730 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2487 ; 1.051 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2834 ; 1.883 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 119 A 200 4 REMARK 3 1 B 119 B 200 4 REMARK 3 2 A 241 A 257 4 REMARK 3 2 B 241 B 257 4 REMARK 3 3 A 263 A 273 4 REMARK 3 3 B 263 B 273 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 860 ; 0.38 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 860 ; 0.45 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): -67.6670 27.1680 -56.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.3923 REMARK 3 T33: 0.5541 T12: -0.0643 REMARK 3 T13: -0.0359 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 3.5316 L22: 1.1138 REMARK 3 L33: 5.1606 L12: 1.0156 REMARK 3 L13: 3.0050 L23: 1.6654 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: -0.0961 S13: -0.1641 REMARK 3 S21: -0.1782 S22: -0.4921 S23: 0.2565 REMARK 3 S31: 0.0973 S32: -0.6608 S33: 0.4274 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): -35.4650 38.5820 -5.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.3289 REMARK 3 T33: 0.3499 T12: -0.0749 REMARK 3 T13: 0.1224 T23: 0.1164 REMARK 3 L TENSOR REMARK 3 L11: 1.4588 L22: 2.8845 REMARK 3 L33: 2.0932 L12: -0.2161 REMARK 3 L13: 0.1408 L23: 0.5440 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.3823 S13: -0.0977 REMARK 3 S21: 0.1221 S22: 0.0261 S23: 0.1143 REMARK 3 S31: 0.3119 S32: -0.1619 S33: 0.0628 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): -54.2940 27.5930 -27.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.4167 T22: 0.4495 REMARK 3 T33: 0.7006 T12: -0.2238 REMARK 3 T13: 0.1331 T23: 0.1025 REMARK 3 L TENSOR REMARK 3 L11: 3.9422 L22: 0.9291 REMARK 3 L33: 7.1356 L12: -0.7166 REMARK 3 L13: -0.0967 L23: 1.7611 REMARK 3 S TENSOR REMARK 3 S11: -0.2133 S12: -0.5734 S13: -0.6863 REMARK 3 S21: 0.2588 S22: -0.2478 S23: 0.3083 REMARK 3 S31: 1.0848 S32: -0.4740 S33: 0.4611 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 278 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9660 36.4870 15.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.2634 T22: 0.5999 REMARK 3 T33: 0.2886 T12: 0.0095 REMARK 3 T13: 0.1595 T23: 0.1004 REMARK 3 L TENSOR REMARK 3 L11: 4.2937 L22: 2.6259 REMARK 3 L33: 3.0618 L12: -0.3744 REMARK 3 L13: 0.2651 L23: -0.6213 REMARK 3 S TENSOR REMARK 3 S11: -0.0986 S12: -0.7789 S13: -0.2304 REMARK 3 S21: 0.4597 S22: 0.0766 S23: 0.2052 REMARK 3 S31: 0.2616 S32: -0.1003 S33: 0.0220 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 19 REMARK 3 RESIDUE RANGE : D 1 D 17 REMARK 3 ORIGIN FOR THE GROUP (A): -42.6730 60.7360 -15.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.3666 REMARK 3 T33: 0.5313 T12: -0.0841 REMARK 3 T13: 0.0100 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.2197 L22: 5.3472 REMARK 3 L33: 2.1905 L12: 0.8704 REMARK 3 L13: -0.1640 L23: 0.1209 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: -0.1455 S13: 0.0121 REMARK 3 S21: 0.0904 S22: -0.1277 S23: 0.2304 REMARK 3 S31: -0.3071 S32: -0.2173 S33: 0.0631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3L2W COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JAN-10. REMARK 100 THE RCSB ID CODE IS RCSB056764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26337 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 38.292 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DLR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35M AMMONIUM SULFATE, 25% (V/V) REMARK 280 GLYCEROL, 4.8% (V/V) 1,6-HEXANEDIOL, 50MM MES-NAOH, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.54500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 78.94000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 78.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.27250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 78.94000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 78.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.81750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 78.94000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.27250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 78.94000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.81750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.54500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -62.54500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 CYS A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ASP A 9 REMARK 465 GLN A 375 REMARK 465 ASN A 376 REMARK 465 GLY A 377 REMARK 465 THR A 378 REMARK 465 THR A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 THR A 382 REMARK 465 ALA A 383 REMARK 465 THR A 384 REMARK 465 MET A 385 REMARK 465 ASP A 386 REMARK 465 HIS A 387 REMARK 465 LEU A 388 REMARK 465 GLU A 389 REMARK 465 LYS A 390 REMARK 465 ASN A 391 REMARK 465 GLU A 392 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 CYS B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 ASN B 7 REMARK 465 LEU B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 LEU B 12 REMARK 465 ASP B 13 REMARK 465 GLN B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 TYR B 20 REMARK 465 ILE B 21 REMARK 465 LYS B 22 REMARK 465 GLY B 23 REMARK 465 TYR B 24 REMARK 465 PRO B 25 REMARK 465 LYS B 26 REMARK 465 GLN B 27 REMARK 465 TYR B 28 REMARK 465 THR B 29 REMARK 465 TYR B 30 REMARK 465 PHE B 31 REMARK 465 LEU B 32 REMARK 465 GLU B 33 REMARK 465 ASP B 34 REMARK 465 GLY B 35 REMARK 465 LYS B 36 REMARK 465 VAL B 37 REMARK 465 LYS B 38 REMARK 465 VAL B 39 REMARK 465 SER B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLY B 44 REMARK 465 VAL B 45 REMARK 465 LYS B 46 REMARK 465 ILE B 47 REMARK 465 ILE B 48 REMARK 465 PRO B 49 REMARK 465 PRO B 50 REMARK 465 GLN B 51 REMARK 465 SER B 52 REMARK 465 ASP B 53 REMARK 465 ARG B 54 REMARK 465 GLN B 55 REMARK 465 LYS B 56 REMARK 465 ILE B 57 REMARK 465 VAL B 58 REMARK 465 LEU B 59 REMARK 465 GLN B 60 REMARK 465 ALA B 61 REMARK 465 HIS B 62 REMARK 465 ASN B 63 REMARK 465 LEU B 64 REMARK 465 ALA B 65 REMARK 465 HIS B 66 REMARK 465 THR B 67 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 GLU B 70 REMARK 465 ALA B 71 REMARK 465 THR B 72 REMARK 465 LEU B 73 REMARK 465 LEU B 74 REMARK 465 LYS B 75 REMARK 465 ILE B 76 REMARK 465 ALA B 77 REMARK 465 ASN B 78 REMARK 465 LEU B 79 REMARK 465 TYR B 80 REMARK 465 TRP B 81 REMARK 465 TRP B 82 REMARK 465 PRO B 83 REMARK 465 ASN B 84 REMARK 465 MET B 85 REMARK 465 ARG B 86 REMARK 465 LYS B 87 REMARK 465 ASP B 88 REMARK 465 VAL B 89 REMARK 465 VAL B 90 REMARK 465 LYS B 91 REMARK 465 GLN B 92 REMARK 465 LEU B 93 REMARK 465 GLY B 94 REMARK 465 ARG B 95 REMARK 465 CYS B 96 REMARK 465 GLN B 97 REMARK 465 GLN B 98 REMARK 465 CYS B 99 REMARK 465 LEU B 100 REMARK 465 ILE B 101 REMARK 465 THR B 102 REMARK 465 ASN B 103 REMARK 465 ALA B 104 REMARK 465 SER B 105 REMARK 465 ASN B 106 REMARK 465 LYS B 107 REMARK 465 ALA B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 PRO B 111 REMARK 465 ILE B 112 REMARK 465 LEU B 113 REMARK 465 ARG B 114 REMARK 465 PRO B 115 REMARK 465 ALA B 279 REMARK 465 ASN B 280 REMARK 465 GLN B 281 REMARK 465 ASP B 282 REMARK 465 THR B 283 REMARK 465 LEU B 284 REMARK 465 ASP B 285 REMARK 465 LEU B 286 REMARK 465 THR B 287 REMARK 465 ARG B 288 REMARK 465 GLU B 289 REMARK 465 GLU B 290 REMARK 465 GLU B 291 REMARK 465 LEU B 292 REMARK 465 SER B 293 REMARK 465 LEU B 294 REMARK 465 LEU B 295 REMARK 465 GLN B 296 REMARK 465 GLU B 297 REMARK 465 ILE B 298 REMARK 465 ARG B 299 REMARK 465 THR B 300 REMARK 465 SER B 301 REMARK 465 LEU B 302 REMARK 465 TYR B 303 REMARK 465 HIS B 304 REMARK 465 PRO B 305 REMARK 465 SER B 306 REMARK 465 THR B 307 REMARK 465 PRO B 308 REMARK 465 PRO B 309 REMARK 465 ALA B 310 REMARK 465 SER B 311 REMARK 465 SER B 312 REMARK 465 ARG B 313 REMARK 465 SER B 314 REMARK 465 TRP B 315 REMARK 465 SER B 316 REMARK 465 PRO B 317 REMARK 465 VAL B 318 REMARK 465 VAL B 319 REMARK 465 GLY B 320 REMARK 465 GLN B 321 REMARK 465 LEU B 322 REMARK 465 VAL B 323 REMARK 465 GLN B 324 REMARK 465 GLU B 325 REMARK 465 ARG B 326 REMARK 465 VAL B 327 REMARK 465 ALA B 328 REMARK 465 ARG B 329 REMARK 465 PRO B 330 REMARK 465 ALA B 331 REMARK 465 SER B 332 REMARK 465 LEU B 333 REMARK 465 ARG B 334 REMARK 465 PRO B 335 REMARK 465 ARG B 336 REMARK 465 TRP B 337 REMARK 465 HIS B 338 REMARK 465 LYS B 339 REMARK 465 PRO B 340 REMARK 465 SER B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 LEU B 344 REMARK 465 LYS B 345 REMARK 465 VAL B 346 REMARK 465 LEU B 347 REMARK 465 ASN B 348 REMARK 465 PRO B 349 REMARK 465 ARG B 350 REMARK 465 THR B 351 REMARK 465 VAL B 352 REMARK 465 VAL B 353 REMARK 465 ILE B 354 REMARK 465 LEU B 355 REMARK 465 ASP B 356 REMARK 465 HIS B 357 REMARK 465 LEU B 358 REMARK 465 GLY B 359 REMARK 465 ASN B 360 REMARK 465 ASN B 361 REMARK 465 ARG B 362 REMARK 465 THR B 363 REMARK 465 VAL B 364 REMARK 465 SER B 365 REMARK 465 ILE B 366 REMARK 465 ASP B 367 REMARK 465 ASN B 368 REMARK 465 LEU B 369 REMARK 465 LYS B 370 REMARK 465 PRO B 371 REMARK 465 THR B 372 REMARK 465 SER B 373 REMARK 465 HIS B 374 REMARK 465 GLN B 375 REMARK 465 ASN B 376 REMARK 465 GLY B 377 REMARK 465 THR B 378 REMARK 465 THR B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 THR B 382 REMARK 465 ALA B 383 REMARK 465 THR B 384 REMARK 465 MET B 385 REMARK 465 ASP B 386 REMARK 465 HIS B 387 REMARK 465 LEU B 388 REMARK 465 GLU B 389 REMARK 465 LYS B 390 REMARK 465 ASN B 391 REMARK 465 GLU B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 LYS B 241 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 6 O3' DC C 6 C3' -0.038 REMARK 500 DT D 8 O3' DT D 8 C3' -0.040 REMARK 500 DA D 12 O3' DA D 12 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 1 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT C 2 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA C 1 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 2 C3' - O3' - P ANGL. DEV. = 10.2 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = -5.8 DEGREES REMARK 500 DA C 7 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DA C 11 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DT D 1 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 9.1 DEGREES REMARK 500 DT D 1 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DT D 9 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 107.19 -52.25 REMARK 500 GLN A 27 -24.49 109.05 REMARK 500 ASP A 34 19.24 58.05 REMARK 500 ALA A 65 18.72 -145.04 REMARK 500 ARG A 114 75.16 -118.48 REMARK 500 PHE A 122 -4.00 77.98 REMARK 500 PRO A 135 109.44 -44.54 REMARK 500 THR A 174 21.05 -79.10 REMARK 500 GLN A 186 39.38 -96.52 REMARK 500 HIS A 213 88.67 -161.25 REMARK 500 LYS A 241 66.33 -106.05 REMARK 500 ALA A 328 -77.57 -55.88 REMARK 500 ARG A 329 70.50 -114.22 REMARK 500 ASP A 356 -144.99 -84.18 REMARK 500 LEU A 358 118.88 -176.20 REMARK 500 PHE B 122 -5.02 86.44 REMARK 500 ILE B 176 -65.38 -98.44 REMARK 500 GLN B 186 35.40 -85.52 REMARK 500 TYR B 212 -21.76 76.06 REMARK 500 HIS B 213 70.11 -107.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 393 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 NE2 REMARK 620 2 HIS A 66 ND1 103.5 REMARK 620 3 CYS A 99 SG 111.6 107.4 REMARK 620 4 CYS A 96 SG 120.3 105.2 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 394 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD1 REMARK 620 2 ELV A 397 OAG 127.9 REMARK 620 3 ASP A 185 OD1 79.8 85.4 REMARK 620 4 ELV A 397 OAD 73.4 54.8 79.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 395 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ELV A 397 OAD REMARK 620 2 ASP A 128 OD2 80.0 REMARK 620 3 ELV A 397 OAE 80.1 156.8 REMARK 620 4 GLU A 221 OE1 136.9 101.2 85.4 REMARK 620 5 GLU A 221 OE2 81.0 98.6 66.5 56.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 393 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 185 OD1 REMARK 620 2 ASP B 128 OD1 70.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ELV A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DLR RELATED DB: PDB REMARK 900 CATALYTIC CORE DOMAIN OF PFV IN REMARK 900 RELATED ID: 3L2Q RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 3L2R RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM REMARK 900 RELATED ID: 3L2S RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MANGANESE REMARK 900 RELATED ID: 3L2T RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND MK0518 REMARK 900 (RALTEGRAVIR) REMARK 900 RELATED ID: 3L2U RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND GS9137 REMARK 900 (ELVITEGRAVIR) REMARK 900 RELATED ID: 3L2V RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MANGANESE AND MK0518 REMARK 900 (RALTEGRAVIR) DBREF 3L2W A 1 392 UNP P14350 POL_FOAMV 752 1143 DBREF 3L2W B 1 392 UNP P14350 POL_FOAMV 752 1143 DBREF 3L2W C 1 19 PDB 3L2W 3L2W 1 19 DBREF 3L2W D 1 17 PDB 3L2W 3L2W 1 17 SEQADV 3L2W GLY A -2 UNP P14350 EXPRESSION TAG SEQADV 3L2W PRO A -1 UNP P14350 EXPRESSION TAG SEQADV 3L2W GLY A 0 UNP P14350 EXPRESSION TAG SEQADV 3L2W SER A 217 UNP P14350 GLY 968 VARIANT SEQADV 3L2W GLY A 218 UNP P14350 SER 969 VARIANT SEQADV 3L2W GLY B -2 UNP P14350 EXPRESSION TAG SEQADV 3L2W PRO B -1 UNP P14350 EXPRESSION TAG SEQADV 3L2W GLY B 0 UNP P14350 EXPRESSION TAG SEQADV 3L2W SER B 217 UNP P14350 GLY 968 VARIANT SEQADV 3L2W GLY B 218 UNP P14350 SER 969 VARIANT SEQRES 1 A 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 A 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 A 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 A 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 A 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 A 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 A 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 A 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 A 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 A 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 A 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 A 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 A 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 A 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 A 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 A 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 A 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 A 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 A 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 A 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 A 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 A 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 A 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 A 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 A 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 A 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 A 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 A 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 A 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 A 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 A 395 LEU GLU LYS ASN GLU SEQRES 1 B 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 B 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 B 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 B 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 B 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 B 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 B 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 B 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 B 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 B 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 B 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 B 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 B 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 B 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 B 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 B 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 B 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 B 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 B 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 B 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 B 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 B 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 B 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 B 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 B 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 B 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 B 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 B 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 B 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 B 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 B 395 LEU GLU LYS ASN GLU SEQRES 1 C 19 DA DT DT DG DT DC DA DT DG DG DA DA DT SEQRES 2 C 19 DT DT DT DG DT DA SEQRES 1 D 17 DT DA DC DA DA DA DA DT DT DC DC DA DT SEQRES 2 D 17 DG DA DC DA HET ZN A 393 1 HET MN A 394 1 HET MN A 395 1 HET MN B 393 1 HET NH4 A 396 1 HET ELV A 397 31 HET GOL A 801 6 HET GOL A 802 6 HET GOL A 803 6 HET GOL A 804 6 HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETNAM NH4 AMMONIUM ION HETNAM ELV 6-(3-CHLORO-2-FLUOROBENZYL)-1-[(1S)-1-(HYDROXYMETHYL)- HETNAM 2 ELV 2-METHYLPROPYL]-7-METHOXY-4-OXO-1,4-DIHYDROQUINOLINE- HETNAM 3 ELV 3-CARBOXYLIC ACID HETNAM GOL GLYCEROL HETSYN ELV ELVITEGRAVIR, GS9137, JTK 303 FORMUL 5 ZN ZN 2+ FORMUL 6 MN 3(MN 2+) FORMUL 9 NH4 H4 N 1+ FORMUL 10 ELV C23 H23 CL F N O5 FORMUL 11 GOL 4(C3 H8 O3) HELIX 1 1 LEU A 12 GLY A 18 1 7 HELIX 2 2 PRO A 50 ASN A 63 1 14 HELIX 3 3 GLY A 68 TYR A 80 1 13 HELIX 4 4 ASN A 84 CYS A 96 1 13 HELIX 5 5 CYS A 96 ASN A 103 1 8 HELIX 6 6 SER A 162 THR A 174 1 13 HELIX 7 7 GLY A 187 SER A 192 1 6 HELIX 8 8 SER A 192 ARG A 202 1 11 HELIX 9 9 HIS A 213 SER A 216 5 4 HELIX 10 10 SER A 217 LEU A 235 1 19 HELIX 11 11 LEU A 245 ASN A 255 1 11 HELIX 12 12 THR A 264 GLY A 271 1 8 HELIX 13 13 GLN A 281 LEU A 286 5 6 HELIX 14 14 THR A 287 SER A 301 1 15 HELIX 15 15 SER B 162 THR B 174 1 13 HELIX 16 16 GLY B 187 SER B 192 1 6 HELIX 17 17 SER B 192 GLY B 203 1 12 HELIX 18 18 SER B 217 LEU B 234 1 18 HELIX 19 19 ARG B 238 THR B 240 5 3 HELIX 20 20 LYS B 241 ASN B 255 1 15 HELIX 21 21 THR B 264 GLY B 271 1 8 SHEET 1 A 3 TYR A 30 GLU A 33 0 SHEET 2 A 3 LYS A 36 ARG A 41 -1 O LYS A 36 N GLU A 33 SHEET 3 A 3 GLY A 44 ILE A 48 -1 O GLY A 44 N ARG A 41 SHEET 1 B 2 ALA A 108 SER A 109 0 SHEET 2 B 2 SER A 314 TRP A 315 1 O TRP A 315 N ALA A 108 SHEET 1 C 5 THR A 153 THR A 158 0 SHEET 2 C 5 TYR A 141 ASP A 147 -1 N TYR A 141 O THR A 158 SHEET 3 C 5 LYS A 124 ILE A 130 -1 N PHE A 126 O VAL A 146 SHEET 4 C 5 VAL A 181 SER A 184 1 O HIS A 183 N PHE A 125 SHEET 5 C 5 HIS A 205 PHE A 208 1 O HIS A 205 N ILE A 182 SHEET 1 D 5 ASN A 361 SER A 365 0 SHEET 2 D 5 THR A 351 LEU A 355 -1 N VAL A 352 O VAL A 364 SHEET 3 D 5 TRP A 337 ASN A 348 -1 N LEU A 344 O VAL A 353 SHEET 4 D 5 LEU A 322 ARG A 326 -1 N GLU A 325 O HIS A 338 SHEET 5 D 5 LEU A 369 PRO A 371 -1 O LYS A 370 N GLN A 324 SHEET 1 E 5 THR B 153 THR B 158 0 SHEET 2 E 5 TYR B 141 ASP B 147 -1 N VAL B 145 O TRP B 154 SHEET 3 E 5 PHE B 125 ILE B 130 -1 N ASP B 128 O VAL B 144 SHEET 4 E 5 VAL B 181 SER B 184 1 O VAL B 181 N PHE B 125 SHEET 5 E 5 HIS B 205 PHE B 208 1 O GLU B 207 N ILE B 182 LINK NE2 HIS A 62 ZN ZN A 393 1555 1555 1.95 LINK OD1 ASP A 128 MN MN A 394 1555 1555 1.95 LINK MN MN A 395 OAD ELV A 397 1555 1555 1.99 LINK ND1 HIS A 66 ZN ZN A 393 1555 1555 2.06 LINK OD2 ASP A 128 MN MN A 395 1555 1555 2.06 LINK SG CYS A 99 ZN ZN A 393 1555 1555 2.06 LINK MN MN A 394 OAG ELV A 397 1555 1555 2.14 LINK MN MN A 395 OAE ELV A 397 1555 1555 2.21 LINK SG CYS A 96 ZN ZN A 393 1555 1555 2.22 LINK OE1 GLU A 221 MN MN A 395 1555 1555 2.22 LINK OD1 ASP A 185 MN MN A 394 1555 1555 2.35 LINK OE2 GLU A 221 MN MN A 395 1555 1555 2.35 LINK OD1 ASP B 185 MN MN B 393 1555 1555 2.38 LINK OD1 ASP B 128 MN MN B 393 1555 1555 2.44 LINK MN MN A 394 OAD ELV A 397 1555 1555 2.56 CISPEP 1 GLY A 131 PRO A 132 0 14.04 CISPEP 2 HIS A 357 LEU A 358 0 -11.41 CISPEP 3 LEU A 358 GLY A 359 0 -1.68 CISPEP 4 GLY B 131 PRO B 132 0 8.44 CISPEP 5 VAL B 260 LEU B 261 0 11.02 SITE 1 AC1 4 HIS A 62 HIS A 66 CYS A 96 CYS A 99 SITE 1 AC2 3 ASP A 128 ASP A 185 ELV A 397 SITE 1 AC3 4 ASP A 128 GLU A 221 ASN A 224 ELV A 397 SITE 1 AC4 3 ASP B 128 ASP B 185 DA C 19 SITE 1 AC5 2 ASP A 116 DT C 3 SITE 1 AC6 10 ASP A 128 ASP A 185 TYR A 212 PRO A 214 SITE 2 AC6 10 GLU A 221 MN A 394 MN A 395 DG C 4 SITE 3 AC6 10 DC D 16 DA D 17 SITE 1 AC7 3 SER A 136 GLN A 137 LYS A 241 SITE 1 AC8 3 THR A 191 PHE A 208 DT C 2 SITE 1 AC9 3 HIS A 338 LYS A 339 HIS A 357 SITE 1 BC1 3 SER A 162 THR A 163 SER A 164 CRYST1 157.880 157.880 125.090 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007994 0.00000 MASTER 836 0 10 21 20 0 12 6 0 0 0 66 END