HEADER HYDROLASE 14-DEC-09 3L1V TITLE CRYSTAL STRUCTURE OF GMHB FROM E. COLI IN COMPLEX WITH CALCIUM AND TITLE 2 PHOSPHATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: D,D-HEPTOSE 1,7-BISPHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-GLYCERO-D-MANNO-HEPTOSE 1,7-BISPHOSPHATE PHOSPHATASE; COMPND 5 EC: 3.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0200, GMHB, JW0196, YAED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS LPS BIOSYNTHESIS, SUGAR PHOSPHATASE, ZINC, HEPTOSE, CARBOHYDRATE KEYWDS 2 METABOLISM, CYTOPLASM, HYDROLASE, LIPOPOLYSACCHARIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.N.SUGIMAN-MARANGOS,M.S.JUNOP REVDAT 3 25-OCT-17 3L1V 1 REMARK REVDAT 2 16-FEB-10 3L1V 1 JRNL REVDAT 1 05-JAN-10 3L1V 0 JRNL AUTH P.L.TAYLOR,S.SUGIMAN-MARANGOS,K.ZHANG,M.A.VALVANO, JRNL AUTH 2 G.D.WRIGHT,M.S.JUNOP JRNL TITL STRUCTURAL AND KINETIC CHARACTERIZATION OF THE LPS JRNL TITL 2 BIOSYNTHETIC ENZYME D-ALPHA,BETA-D-HEPTOSE-1,7-BISPHOSPHATE JRNL TITL 3 PHOSPHATASE (GMHB) FROM ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 49 1033 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20050699 JRNL DOI 10.1021/BI901780J REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 23855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1373 - 4.2053 0.89 2205 191 0.1924 0.2362 REMARK 3 2 4.2053 - 3.3399 0.89 2111 187 0.1830 0.2416 REMARK 3 3 3.3399 - 2.9182 0.93 2172 193 0.2337 0.2543 REMARK 3 4 2.9182 - 2.6517 0.94 2194 192 0.2612 0.2860 REMARK 3 5 2.6517 - 2.4617 0.95 2199 195 0.2668 0.2991 REMARK 3 6 2.4617 - 2.3167 0.97 2235 196 0.2585 0.2860 REMARK 3 7 2.3167 - 2.2007 0.97 2219 195 0.2853 0.3519 REMARK 3 8 2.2007 - 2.1050 0.98 2248 201 0.3093 0.3345 REMARK 3 9 2.1050 - 2.0239 0.98 2250 197 0.3569 0.3483 REMARK 3 10 2.0239 - 1.9540 0.92 2094 181 0.3776 0.4142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 37.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2900 REMARK 3 ANGLE : 1.360 3942 REMARK 3 CHIRALITY : 0.115 436 REMARK 3 PLANARITY : 0.007 518 REMARK 3 DIHEDRAL : 18.331 1034 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B AND RESID 184:205) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8000 17.5365 -23.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.1626 REMARK 3 T33: 0.0918 T12: -0.0060 REMARK 3 T13: -0.0536 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.1414 L22: 1.1449 REMARK 3 L33: 0.7390 L12: -0.2351 REMARK 3 L13: -0.9161 L23: -0.2997 REMARK 3 S TENSOR REMARK 3 S11: 0.1002 S12: -0.0987 S13: 0.0134 REMARK 3 S21: -0.0661 S22: 0.0987 S23: -0.0057 REMARK 3 S31: -0.0571 S32: 0.2181 S33: 0.0188 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : BLUE CONFOCAL OPTICS MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24747 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.890 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.89 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2GMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS, 0.005M DTT, REMARK 280 0.025M SODIUM CHLORIDE, 0.005M CALCIUM CHLORIDE, 0.005M SODIUM REMARK 280 PHOSPHATE, 11% GLYCEROL , PH 7.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.28750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.15450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.28750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.15450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY OF GMHB IS A MONOMER AS JUDGED BY REMARK 300 GEL FILTRATION CHROMATOGRAPHY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 206 REMARK 465 GLN A 207 REMARK 465 LYS A 208 REMARK 465 PRO A 209 REMARK 465 ALA A 210 REMARK 465 GLN A 211 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 206 REMARK 465 GLN B 207 REMARK 465 LYS B 208 REMARK 465 PRO B 209 REMARK 465 ALA B 210 REMARK 465 GLN B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 LYS B 205 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 57 NH2 ARG B 60 1.56 REMARK 500 O HOH A 221 O HOH A 274 1.86 REMARK 500 OD1 ASP B 33 O HOH B 216 1.89 REMARK 500 OD2 ASP A 198 O HOH A 227 1.89 REMARK 500 OD1 ASP A 57 NH2 ARG A 60 1.94 REMARK 500 O HOH A 217 O HOH A 272 1.95 REMARK 500 O HOH A 231 O HOH A 350 1.96 REMARK 500 O HOH B 277 O HOH B 283 1.96 REMARK 500 NE ARG A 130 O HOH A 326 1.96 REMARK 500 OD2 ASP B 128 O HOH B 309 1.97 REMARK 500 O ASP B 53 O HOH B 254 1.98 REMARK 500 O ALA A 167 O HOH A 323 1.99 REMARK 500 OE2 GLU A 85 O HOH A 331 2.03 REMARK 500 OG SER B 24 O HOH B 316 2.09 REMARK 500 O GLU A 122 O HOH A 322 2.09 REMARK 500 OD1 ASP B 101 O HOH B 284 2.13 REMARK 500 N SER B 24 O HOH B 298 2.14 REMARK 500 O HOH B 239 O HOH B 319 2.17 REMARK 500 O HOH A 247 O HOH A 293 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 124 O HOH B 284 4455 1.78 REMARK 500 NE2 GLN A 117 O HOH B 256 1545 1.85 REMARK 500 O HOH A 222 O HOH B 324 4445 1.89 REMARK 500 O HOH A 341 O HOH B 222 1445 1.92 REMARK 500 O GLU A 186 NZ LYS B 64 3644 1.97 REMARK 500 NH2 ARG A 124 NH2 ARG B 124 1545 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 32 -68.69 -97.67 REMARK 500 HIS A 44 12.82 -141.32 REMARK 500 ARG B 32 -67.67 -93.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 129 SG REMARK 620 2 CYS A 127 SG 108.0 REMARK 620 3 CYS A 112 SG 128.1 107.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 112 SG REMARK 620 2 CYS B 129 SG 124.7 REMARK 620 3 CYS B 127 SG 97.9 111.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 213 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 214 O1 REMARK 620 2 ASP A 33 O 95.8 REMARK 620 3 ASP A 156 OD1 163.7 92.2 REMARK 620 4 ASP A 31 OD2 127.2 86.4 67.3 REMARK 620 5 ASP A 31 OD1 82.5 84.1 112.6 45.2 REMARK 620 6 HOH A 350 O 90.4 78.6 77.3 140.9 160.5 REMARK 620 7 HOH A 261 O 80.8 173.4 92.5 91.1 89.8 107.0 REMARK 620 8 HOH A 231 O 49.6 88.6 116.7 173.7 130.4 41.0 93.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 213 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 B 214 O2 REMARK 620 2 ASP B 156 OD1 112.0 REMARK 620 3 ASP B 33 O 81.7 77.9 REMARK 620 4 ASP B 31 OD2 61.8 51.9 59.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L1U RELATED DB: PDB DBREF 3L1V A 21 211 UNP P63228 GMHB_ECOLI 1 191 DBREF 3L1V B 21 211 UNP P63228 GMHB_ECOLI 1 191 SEQADV 3L1V MET A 1 UNP P63228 EXPRESSION TAG SEQADV 3L1V GLY A 2 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER A 3 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER A 4 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS A 5 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS A 6 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS A 7 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS A 8 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS A 9 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS A 10 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER A 11 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER A 12 UNP P63228 EXPRESSION TAG SEQADV 3L1V GLY A 13 UNP P63228 EXPRESSION TAG SEQADV 3L1V LEU A 14 UNP P63228 EXPRESSION TAG SEQADV 3L1V VAL A 15 UNP P63228 EXPRESSION TAG SEQADV 3L1V PRO A 16 UNP P63228 EXPRESSION TAG SEQADV 3L1V ARG A 17 UNP P63228 EXPRESSION TAG SEQADV 3L1V GLY A 18 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER A 19 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS A 20 UNP P63228 EXPRESSION TAG SEQADV 3L1V MET B 1 UNP P63228 EXPRESSION TAG SEQADV 3L1V GLY B 2 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER B 3 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER B 4 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS B 5 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS B 6 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS B 7 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS B 8 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS B 9 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS B 10 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER B 11 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER B 12 UNP P63228 EXPRESSION TAG SEQADV 3L1V GLY B 13 UNP P63228 EXPRESSION TAG SEQADV 3L1V LEU B 14 UNP P63228 EXPRESSION TAG SEQADV 3L1V VAL B 15 UNP P63228 EXPRESSION TAG SEQADV 3L1V PRO B 16 UNP P63228 EXPRESSION TAG SEQADV 3L1V ARG B 17 UNP P63228 EXPRESSION TAG SEQADV 3L1V GLY B 18 UNP P63228 EXPRESSION TAG SEQADV 3L1V SER B 19 UNP P63228 EXPRESSION TAG SEQADV 3L1V HIS B 20 UNP P63228 EXPRESSION TAG SEQRES 1 A 211 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 211 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL PRO SEQRES 3 A 211 ALA ILE PHE LEU ASP ARG ASP GLY THR ILE ASN VAL ASP SEQRES 4 A 211 HIS GLY TYR VAL HIS GLU ILE ASP ASN PHE GLU PHE ILE SEQRES 5 A 211 ASP GLY VAL ILE ASP ALA MET ARG GLU LEU LYS LYS MET SEQRES 6 A 211 GLY PHE ALA LEU VAL VAL VAL THR ASN GLN SER GLY ILE SEQRES 7 A 211 ALA ARG GLY LYS PHE THR GLU ALA GLN PHE GLU THR LEU SEQRES 8 A 211 THR GLU TRP MET ASP TRP SER LEU ALA ASP ARG ASP VAL SEQRES 9 A 211 ASP LEU ASP GLY ILE TYR TYR CYS PRO HIS HIS PRO GLN SEQRES 10 A 211 GLY SER VAL GLU GLU PHE ARG GLN VAL CYS ASP CYS ARG SEQRES 11 A 211 LYS PRO HIS PRO GLY MET LEU LEU SER ALA ARG ASP TYR SEQRES 12 A 211 LEU HIS ILE ASP MET ALA ALA SER TYR MET VAL GLY ASP SEQRES 13 A 211 LYS LEU GLU ASP MET GLN ALA ALA VAL ALA ALA ASN VAL SEQRES 14 A 211 GLY THR LYS VAL LEU VAL ARG THR GLY LYS PRO ILE THR SEQRES 15 A 211 PRO GLU ALA GLU ASN ALA ALA ASP TRP VAL LEU ASN SER SEQRES 16 A 211 LEU ALA ASP LEU PRO GLN ALA ILE LYS LYS GLN GLN LYS SEQRES 17 A 211 PRO ALA GLN SEQRES 1 B 211 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 211 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL PRO SEQRES 3 B 211 ALA ILE PHE LEU ASP ARG ASP GLY THR ILE ASN VAL ASP SEQRES 4 B 211 HIS GLY TYR VAL HIS GLU ILE ASP ASN PHE GLU PHE ILE SEQRES 5 B 211 ASP GLY VAL ILE ASP ALA MET ARG GLU LEU LYS LYS MET SEQRES 6 B 211 GLY PHE ALA LEU VAL VAL VAL THR ASN GLN SER GLY ILE SEQRES 7 B 211 ALA ARG GLY LYS PHE THR GLU ALA GLN PHE GLU THR LEU SEQRES 8 B 211 THR GLU TRP MET ASP TRP SER LEU ALA ASP ARG ASP VAL SEQRES 9 B 211 ASP LEU ASP GLY ILE TYR TYR CYS PRO HIS HIS PRO GLN SEQRES 10 B 211 GLY SER VAL GLU GLU PHE ARG GLN VAL CYS ASP CYS ARG SEQRES 11 B 211 LYS PRO HIS PRO GLY MET LEU LEU SER ALA ARG ASP TYR SEQRES 12 B 211 LEU HIS ILE ASP MET ALA ALA SER TYR MET VAL GLY ASP SEQRES 13 B 211 LYS LEU GLU ASP MET GLN ALA ALA VAL ALA ALA ASN VAL SEQRES 14 B 211 GLY THR LYS VAL LEU VAL ARG THR GLY LYS PRO ILE THR SEQRES 15 B 211 PRO GLU ALA GLU ASN ALA ALA ASP TRP VAL LEU ASN SER SEQRES 16 B 211 LEU ALA ASP LEU PRO GLN ALA ILE LYS LYS GLN GLN LYS SEQRES 17 B 211 PRO ALA GLN HET ZN A 212 1 HET CA A 213 1 HET PO4 A 214 5 HET ZN B 212 1 HET CA B 213 1 HET PO4 B 214 5 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 9 HOH *251(H2 O) HELIX 1 1 GLU A 45 PHE A 49 5 5 HELIX 2 2 GLY A 54 GLY A 66 1 13 HELIX 3 3 SER A 76 GLY A 81 1 6 HELIX 4 4 THR A 84 ASP A 101 1 18 HELIX 5 5 VAL A 120 ARG A 124 5 5 HELIX 6 6 PRO A 134 HIS A 145 1 12 HELIX 7 7 LYS A 157 ASN A 168 1 12 HELIX 8 8 THR A 182 ALA A 189 1 8 HELIX 9 9 SER A 195 ALA A 197 5 3 HELIX 10 10 ASP A 198 LYS A 205 1 8 HELIX 11 11 GLU B 45 PHE B 49 5 5 HELIX 12 12 GLY B 54 MET B 65 1 12 HELIX 13 13 SER B 76 GLY B 81 1 6 HELIX 14 14 THR B 84 ARG B 102 1 19 HELIX 15 15 VAL B 120 ARG B 124 5 5 HELIX 16 16 PRO B 134 LEU B 144 1 11 HELIX 17 17 LYS B 157 ALA B 167 1 11 HELIX 18 18 THR B 182 ALA B 188 1 7 HELIX 19 19 SER B 195 ALA B 197 5 3 HELIX 20 20 ASP B 198 LYS B 205 1 8 SHEET 1 A 6 GLY A 108 CYS A 112 0 SHEET 2 A 6 ALA A 68 ASN A 74 1 N VAL A 71 O TYR A 110 SHEET 3 A 6 ALA A 27 LEU A 30 1 N LEU A 30 O VAL A 70 SHEET 4 A 6 TYR A 152 GLY A 155 1 O TYR A 152 N PHE A 29 SHEET 5 A 6 THR A 171 VAL A 175 1 O VAL A 173 N MET A 153 SHEET 6 A 6 TRP A 191 LEU A 193 1 O LEU A 193 N LEU A 174 SHEET 1 B 6 GLY B 108 CYS B 112 0 SHEET 2 B 6 ALA B 68 ASN B 74 1 N VAL B 71 O TYR B 110 SHEET 3 B 6 ALA B 27 LEU B 30 1 N ILE B 28 O ALA B 68 SHEET 4 B 6 TYR B 152 GLY B 155 1 O TYR B 152 N PHE B 29 SHEET 5 B 6 THR B 171 VAL B 175 1 O VAL B 173 N MET B 153 SHEET 6 B 6 TRP B 191 LEU B 193 1 O LEU B 193 N LEU B 174 LINK SG CYS A 129 ZN ZN A 212 1555 1555 2.13 LINK SG CYS B 112 ZN ZN B 212 1555 1555 2.22 LINK SG CYS A 127 ZN ZN A 212 1555 1555 2.27 LINK SG CYS B 129 ZN ZN B 212 1555 1555 2.35 LINK CA CA A 213 O1 PO4 A 214 1555 1555 2.50 LINK O ASP A 33 CA CA A 213 1555 1555 2.51 LINK CA CA B 213 O2 PO4 B 214 1555 1555 2.57 LINK OD1 ASP A 156 CA CA A 213 1555 1555 2.57 LINK SG CYS A 112 ZN ZN A 212 1555 1555 2.62 LINK SG CYS B 127 ZN ZN B 212 1555 1555 2.62 LINK OD2 ASP A 31 CA CA A 213 1555 1555 2.83 LINK OD1 ASP A 31 CA CA A 213 1555 1555 2.84 LINK OD1 ASP B 156 CA CA B 213 1555 1555 2.84 LINK O ASP B 33 CA CA B 213 1555 1555 2.89 LINK OD2 ASP B 31 CA CA B 213 1555 1555 2.96 LINK CA CA A 213 O HOH A 350 1555 1555 2.54 LINK CA CA A 213 O HOH A 261 1555 1555 2.77 LINK CA CA A 213 O HOH A 231 1555 1555 2.95 CISPEP 1 LYS A 131 PRO A 132 0 13.93 CISPEP 2 LYS B 131 PRO B 132 0 10.56 SITE 1 AC1 5 CYS A 112 HIS A 114 CYS A 127 CYS A 129 SITE 2 AC1 5 ARG A 130 SITE 1 AC2 7 ASP A 31 ASP A 33 ASP A 156 PO4 A 214 SITE 2 AC2 7 HOH A 231 HOH A 261 HOH A 350 SITE 1 AC3 10 ASP A 31 ARG A 32 ASP A 33 THR A 73 SITE 2 AC3 10 ASN A 74 GLN A 75 LYS A 131 CA A 213 SITE 3 AC3 10 HOH A 231 HOH A 330 SITE 1 AC4 4 CYS B 112 HIS B 114 CYS B 127 CYS B 129 SITE 1 AC5 5 ASP B 31 ASP B 33 ASP B 156 LYS B 157 SITE 2 AC5 5 PO4 B 214 SITE 1 AC6 7 ASP B 31 ARG B 32 ASP B 33 THR B 73 SITE 2 AC6 7 ASN B 74 LYS B 131 CA B 213 CRYST1 50.575 64.309 104.381 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009580 0.00000 MASTER 443 0 6 20 12 0 12 6 0 0 0 34 END