HEADER HYDROLASE 14-DEC-09 3L1U TITLE CRYSTAL STRUCTURE OF CALCIUM-BOUND GMHB FROM E. COLI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: D,D-HEPTOSE 1,7-BISPHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-GLYCERO-D-MANNO-HEPTOSE 1,7-BISPHOSPHATE PHOSPHATASE; COMPND 5 EC: 3.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0200, GMHB, JW0196, YAED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS LPS BIOSYNTHESIS, SUGAR PHOSPHATASE, HEPTOSE, ZINC, CARBOHYDRATE KEYWDS 2 METABOLISM, CYTOPLASM, HYDROLASE, LIPOPOLYSACCHARIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.N.SUGIMAN-MARANGOS,M.S.JUNOP REVDAT 3 25-OCT-17 3L1U 1 REMARK REVDAT 2 16-FEB-10 3L1U 1 JRNL REVDAT 1 05-JAN-10 3L1U 0 JRNL AUTH P.L.TAYLOR,S.SUGIMAN-MARANGOS,K.ZHANG,M.A.VALVANO, JRNL AUTH 2 G.D.WRIGHT,M.S.JUNOP JRNL TITL STRUCTURAL AND KINETIC CHARACTERIZATION OF THE LPS JRNL TITL 2 BIOSYNTHETIC ENZYME D-ALPHA,BETA-D-HEPTOSE-1,7-BISPHOSPHATE JRNL TITL 3 PHOSPHATASE (GMHB) FROM ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 49 1033 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20050699 JRNL DOI 10.1021/BI901780J REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 24872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5804 - 4.6932 0.90 1643 141 0.2150 0.2139 REMARK 3 2 4.6932 - 3.7256 0.96 1654 141 0.1812 0.1929 REMARK 3 3 3.7256 - 3.2548 0.97 1651 142 0.1912 0.2327 REMARK 3 4 3.2548 - 2.9573 0.97 1656 142 0.2290 0.2463 REMARK 3 5 2.9573 - 2.7454 0.98 1660 140 0.2625 0.2587 REMARK 3 6 2.7454 - 2.5835 0.98 1653 143 0.2484 0.3068 REMARK 3 7 2.5835 - 2.4542 0.99 1658 141 0.2417 0.2690 REMARK 3 8 2.4542 - 2.3473 0.99 1660 141 0.2378 0.2427 REMARK 3 9 2.3473 - 2.2570 0.99 1627 141 0.2517 0.2900 REMARK 3 10 2.2570 - 2.1791 0.99 1651 143 0.2545 0.2677 REMARK 3 11 2.1791 - 2.1110 0.99 1644 143 0.2632 0.2661 REMARK 3 12 2.1110 - 2.0506 0.98 1626 139 0.2671 0.3312 REMARK 3 13 2.0506 - 1.9966 0.97 1608 136 0.3162 0.3605 REMARK 3 14 1.9966 - 1.9500 0.92 1516 132 0.3567 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 40.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2921 REMARK 3 ANGLE : 1.012 3966 REMARK 3 CHIRALITY : 0.052 438 REMARK 3 PLANARITY : 0.003 521 REMARK 3 DIHEDRAL : 18.776 1060 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : BLUE CONFOCAL OPTICS MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.030 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.91 REMARK 200 R MERGE FOR SHELL (I) : 0.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2GMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS, 0.005M DTT, REMARK 280 0.025M SODIUM CHLORIDE, 0.005M CALCIUM CHLORIDE, 11% GLYCEROL , REMARK 280 PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.27650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.61800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.01550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.61800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.27650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.01550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER AS JUDGED BY GEL REMARK 300 FILTRATION CHROMATOGRAPHY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 206 REMARK 465 GLN A 207 REMARK 465 LYS A 208 REMARK 465 PRO A 209 REMARK 465 ALA A 210 REMARK 465 GLN A 211 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 206 REMARK 465 GLN B 207 REMARK 465 LYS B 208 REMARK 465 PRO B 209 REMARK 465 ALA B 210 REMARK 465 GLN B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 262 O HOH A 305 1.86 REMARK 500 O HOH A 277 O HOH A 397 1.88 REMARK 500 O GLY A 178 O HOH A 330 1.91 REMARK 500 OD1 ASP B 105 O HOH B 369 1.92 REMARK 500 O HOH A 229 O HOH A 252 1.92 REMARK 500 O HOH A 336 O HOH A 345 1.95 REMARK 500 N SER B 24 O HOH B 288 1.98 REMARK 500 O HOH A 275 O HOH A 339 1.99 REMARK 500 O HOH A 351 O HOH A 374 1.99 REMARK 500 OE2 GLU B 89 O HOH B 284 2.01 REMARK 500 O HOH A 360 O HOH A 391 2.02 REMARK 500 O HOH A 283 O HOH A 331 2.02 REMARK 500 ND1 HIS B 133 O HOH B 226 2.04 REMARK 500 O HOH A 300 O HOH A 344 2.04 REMARK 500 ND1 HIS A 40 O HOH A 244 2.05 REMARK 500 OE1 GLU B 159 O HOH B 348 2.06 REMARK 500 O HOH A 304 O HOH A 394 2.06 REMARK 500 O HOH B 267 O HOH B 302 2.06 REMARK 500 OH TYR B 152 O HOH B 278 2.06 REMARK 500 O HOH A 275 O HOH A 276 2.08 REMARK 500 O HOH B 218 O HOH B 289 2.10 REMARK 500 O HOH B 298 O HOH B 325 2.15 REMARK 500 OD2 ASP A 103 O HOH A 377 2.18 REMARK 500 O HOH A 293 O HOH A 366 2.18 REMARK 500 O HOH B 260 O HOH B 316 2.18 REMARK 500 O HOH A 318 O HOH A 337 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 299 O HOH A 309 4455 2.05 REMARK 500 O HOH A 291 O HOH A 299 4555 2.17 REMARK 500 O HOH A 245 O HOH B 369 3645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 32 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 32 -79.35 -103.21 REMARK 500 HIS A 44 -0.73 -142.27 REMARK 500 GLN A 125 155.32 179.10 REMARK 500 ARG B 32 -78.02 -109.45 REMARK 500 THR B 35 -46.38 -131.00 REMARK 500 HIS B 44 -5.01 -141.85 REMARK 500 GLN B 125 151.82 173.52 REMARK 500 ARG B 176 30.60 -95.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 ND1 REMARK 620 2 CYS A 129 SG 101.2 REMARK 620 3 CYS A 112 SG 113.3 127.6 REMARK 620 4 CYS A 127 SG 99.2 106.7 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 127 SG REMARK 620 2 CYS B 129 SG 105.1 REMARK 620 3 CYS B 112 SG 101.1 117.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 213 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 33 O REMARK 620 2 ASP B 156 OD1 98.0 REMARK 620 3 ASP B 31 OD2 74.6 74.6 REMARK 620 4 HOH B 283 O 96.0 157.6 126.3 REMARK 620 5 HOH B 351 O 76.6 83.4 140.5 82.9 REMARK 620 6 HOH B 304 O 162.0 78.5 87.5 93.2 120.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 213 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD2 REMARK 620 2 ASP A 33 O 73.1 REMARK 620 3 ASP A 156 OD1 73.6 95.5 REMARK 620 4 HOH A 354 O 143.8 83.6 81.7 REMARK 620 5 HOH A 355 O 132.4 100.8 152.5 78.3 REMARK 620 6 HOH A 353 O 88.5 161.3 81.4 113.9 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L1V RELATED DB: PDB DBREF 3L1U A 21 211 UNP P63228 GMHB_ECOLI 1 191 DBREF 3L1U B 21 211 UNP P63228 GMHB_ECOLI 1 191 SEQADV 3L1U MET A 1 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY A 2 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 3 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 4 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 5 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 6 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 7 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 8 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 9 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 10 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 11 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 12 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY A 13 UNP P63228 EXPRESSION TAG SEQADV 3L1U LEU A 14 UNP P63228 EXPRESSION TAG SEQADV 3L1U VAL A 15 UNP P63228 EXPRESSION TAG SEQADV 3L1U PRO A 16 UNP P63228 EXPRESSION TAG SEQADV 3L1U ARG A 17 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY A 18 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 19 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 20 UNP P63228 EXPRESSION TAG SEQADV 3L1U MET B 1 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY B 2 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 3 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 4 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 5 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 6 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 7 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 8 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 9 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 10 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 11 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 12 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY B 13 UNP P63228 EXPRESSION TAG SEQADV 3L1U LEU B 14 UNP P63228 EXPRESSION TAG SEQADV 3L1U VAL B 15 UNP P63228 EXPRESSION TAG SEQADV 3L1U PRO B 16 UNP P63228 EXPRESSION TAG SEQADV 3L1U ARG B 17 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY B 18 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 19 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 20 UNP P63228 EXPRESSION TAG SEQRES 1 A 211 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 211 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL PRO SEQRES 3 A 211 ALA ILE PHE LEU ASP ARG ASP GLY THR ILE ASN VAL ASP SEQRES 4 A 211 HIS GLY TYR VAL HIS GLU ILE ASP ASN PHE GLU PHE ILE SEQRES 5 A 211 ASP GLY VAL ILE ASP ALA MET ARG GLU LEU LYS LYS MET SEQRES 6 A 211 GLY PHE ALA LEU VAL VAL VAL THR ASN GLN SER GLY ILE SEQRES 7 A 211 ALA ARG GLY LYS PHE THR GLU ALA GLN PHE GLU THR LEU SEQRES 8 A 211 THR GLU TRP MET ASP TRP SER LEU ALA ASP ARG ASP VAL SEQRES 9 A 211 ASP LEU ASP GLY ILE TYR TYR CYS PRO HIS HIS PRO GLN SEQRES 10 A 211 GLY SER VAL GLU GLU PHE ARG GLN VAL CYS ASP CYS ARG SEQRES 11 A 211 LYS PRO HIS PRO GLY MET LEU LEU SER ALA ARG ASP TYR SEQRES 12 A 211 LEU HIS ILE ASP MET ALA ALA SER TYR MET VAL GLY ASP SEQRES 13 A 211 LYS LEU GLU ASP MET GLN ALA ALA VAL ALA ALA ASN VAL SEQRES 14 A 211 GLY THR LYS VAL LEU VAL ARG THR GLY LYS PRO ILE THR SEQRES 15 A 211 PRO GLU ALA GLU ASN ALA ALA ASP TRP VAL LEU ASN SER SEQRES 16 A 211 LEU ALA ASP LEU PRO GLN ALA ILE LYS LYS GLN GLN LYS SEQRES 17 A 211 PRO ALA GLN SEQRES 1 B 211 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 211 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL PRO SEQRES 3 B 211 ALA ILE PHE LEU ASP ARG ASP GLY THR ILE ASN VAL ASP SEQRES 4 B 211 HIS GLY TYR VAL HIS GLU ILE ASP ASN PHE GLU PHE ILE SEQRES 5 B 211 ASP GLY VAL ILE ASP ALA MET ARG GLU LEU LYS LYS MET SEQRES 6 B 211 GLY PHE ALA LEU VAL VAL VAL THR ASN GLN SER GLY ILE SEQRES 7 B 211 ALA ARG GLY LYS PHE THR GLU ALA GLN PHE GLU THR LEU SEQRES 8 B 211 THR GLU TRP MET ASP TRP SER LEU ALA ASP ARG ASP VAL SEQRES 9 B 211 ASP LEU ASP GLY ILE TYR TYR CYS PRO HIS HIS PRO GLN SEQRES 10 B 211 GLY SER VAL GLU GLU PHE ARG GLN VAL CYS ASP CYS ARG SEQRES 11 B 211 LYS PRO HIS PRO GLY MET LEU LEU SER ALA ARG ASP TYR SEQRES 12 B 211 LEU HIS ILE ASP MET ALA ALA SER TYR MET VAL GLY ASP SEQRES 13 B 211 LYS LEU GLU ASP MET GLN ALA ALA VAL ALA ALA ASN VAL SEQRES 14 B 211 GLY THR LYS VAL LEU VAL ARG THR GLY LYS PRO ILE THR SEQRES 15 B 211 PRO GLU ALA GLU ASN ALA ALA ASP TRP VAL LEU ASN SER SEQRES 16 B 211 LEU ALA ASP LEU PRO GLN ALA ILE LYS LYS GLN GLN LYS SEQRES 17 B 211 PRO ALA GLN HET ZN A 212 1 HET CA A 213 1 HET ZN B 212 1 HET CA B 213 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *345(H2 O) HELIX 1 1 GLU A 45 PHE A 49 5 5 HELIX 2 2 GLY A 54 MET A 65 1 12 HELIX 3 3 THR A 84 ASP A 101 1 18 HELIX 4 4 VAL A 120 ARG A 124 5 5 HELIX 5 5 PRO A 134 HIS A 145 1 12 HELIX 6 6 ASP A 147 ALA A 150 5 4 HELIX 7 7 LYS A 157 ALA A 167 1 11 HELIX 8 8 THR A 182 ALA A 189 1 8 HELIX 9 9 SER A 195 ALA A 197 5 3 HELIX 10 10 ASP A 198 LYS A 205 1 8 HELIX 11 11 GLU B 45 PHE B 49 5 5 HELIX 12 12 GLY B 54 MET B 65 1 12 HELIX 13 13 THR B 84 ARG B 102 1 19 HELIX 14 14 VAL B 120 ARG B 124 5 5 HELIX 15 15 PRO B 134 HIS B 145 1 12 HELIX 16 16 ASP B 147 ALA B 150 5 4 HELIX 17 17 LYS B 157 ASN B 168 1 12 HELIX 18 18 THR B 182 ALA B 189 1 8 HELIX 19 19 SER B 195 ALA B 197 5 3 HELIX 20 20 ASP B 198 LYS B 205 1 8 SHEET 1 A 6 GLY A 108 CYS A 112 0 SHEET 2 A 6 ALA A 68 ASN A 74 1 N VAL A 71 O TYR A 110 SHEET 3 A 6 ALA A 27 LEU A 30 1 N LEU A 30 O VAL A 70 SHEET 4 A 6 TYR A 152 GLY A 155 1 O TYR A 152 N PHE A 29 SHEET 5 A 6 THR A 171 VAL A 175 1 O VAL A 173 N MET A 153 SHEET 6 A 6 TRP A 191 LEU A 193 1 O TRP A 191 N LEU A 174 SHEET 1 B 6 GLY B 108 CYS B 112 0 SHEET 2 B 6 ALA B 68 ASN B 74 1 N VAL B 71 O TYR B 110 SHEET 3 B 6 ALA B 27 LEU B 30 1 N LEU B 30 O VAL B 70 SHEET 4 B 6 TYR B 152 GLY B 155 1 O TYR B 152 N PHE B 29 SHEET 5 B 6 THR B 171 VAL B 175 1 O VAL B 173 N MET B 153 SHEET 6 B 6 TRP B 191 LEU B 193 1 O TRP B 191 N LEU B 174 LINK ND1 HIS A 114 ZN ZN A 212 1555 1555 2.12 LINK SG CYS A 129 ZN ZN A 212 1555 1555 2.33 LINK SG CYS B 127 ZN ZN B 212 1555 1555 2.43 LINK SG CYS A 112 ZN ZN A 212 1555 1555 2.43 LINK SG CYS A 127 ZN ZN A 212 1555 1555 2.44 LINK SG CYS B 129 ZN ZN B 212 1555 1555 2.44 LINK O ASP B 33 CA CA B 213 1555 1555 2.48 LINK SG CYS B 112 ZN ZN B 212 1555 1555 2.48 LINK OD2 ASP A 31 CA CA A 213 1555 1555 2.51 LINK O ASP A 33 CA CA A 213 1555 1555 2.53 LINK OD1 ASP A 156 CA CA A 213 1555 1555 2.53 LINK OD1 ASP B 156 CA CA B 213 1555 1555 2.58 LINK OD2 ASP B 31 CA CA B 213 1555 1555 2.64 LINK CA CA A 213 O HOH A 354 1555 1555 2.52 LINK CA CA A 213 O HOH A 355 1555 1555 2.54 LINK CA CA B 213 O HOH B 283 1555 1555 2.56 LINK CA CA B 213 O HOH B 351 1555 1555 2.58 LINK CA CA A 213 O HOH A 353 1555 1555 2.59 LINK CA CA B 213 O HOH B 304 1555 1555 2.68 CISPEP 1 LYS A 131 PRO A 132 0 10.73 CISPEP 2 LYS B 131 PRO B 132 0 11.17 SITE 1 AC1 5 CYS A 112 HIS A 114 CYS A 127 CYS A 129 SITE 2 AC1 5 ARG A 130 SITE 1 AC2 6 ASP A 31 ASP A 33 ASP A 156 HOH A 353 SITE 2 AC2 6 HOH A 354 HOH A 355 SITE 1 AC3 4 CYS B 112 HIS B 114 CYS B 127 CYS B 129 SITE 1 AC4 6 ASP B 31 ASP B 33 ASP B 156 HOH B 283 SITE 2 AC4 6 HOH B 304 HOH B 351 CRYST1 50.553 64.031 105.236 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009502 0.00000 MASTER 443 0 4 20 12 0 7 6 0 0 0 34 END