HEADER TRANSFERASE 09-DEC-09 3L06 TITLE CRYSTAL STRUCTURE OF N-ACETYL-L-ORNITHINE TRANSCARBAMYLASE E92V MUTANT TITLE 2 COMPLEXED WITH CARBAMYL PHOSPHATE AND N-SUCCINYL-L-NORVALINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLORNITHINE CARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AOTCASE; COMPND 5 EC: 2.1.3.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 190485; SOURCE 4 GENE: ARGF, ARGF', XCC2249; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSCARBAMYLASE, AMINO-ACID BIOSYNTHESIS, ARGININE BIOSYNTHESIS, KEYWDS 2 CYTOPLASM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SHI,X.YU,N.M.ALLEWELL,M.TUCHMAN REVDAT 3 13-OCT-21 3L06 1 REMARK SEQADV LINK REVDAT 2 01-NOV-17 3L06 1 REMARK REVDAT 1 31-MAR-10 3L06 0 SPRSDE 31-MAR-10 3L06 2G6C JRNL AUTH D.SHI,X.YU,J.CABRERA-LUQUE,T.Y.CHEN,L.ROTH,H.MORIZONO, JRNL AUTH 2 N.M.ALLEWELL,M.TUCHMAN JRNL TITL A SINGLE MUTATION IN THE ACTIVE SITE SWAPS THE SUBSTRATE JRNL TITL 2 SPECIFICITY OF N-ACETYL-L-ORNITHINE TRANSCARBAMYLASE AND JRNL TITL 3 N-SUCCINYL-L-ORNITHINE TRANSCARBAMYLASE. JRNL REF PROTEIN SCI. V. 16 1689 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17600144 JRNL DOI 10.1110/PS.072919907 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2064811.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 8922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 494 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1348 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 71 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.49 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.110 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.830 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.610 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.440 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 38.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LIGAND.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9016 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3KZO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, BIS-TRIS, PEG3350, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.86050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.86050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.86050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.86050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 64.86050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 64.86050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 64.86050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 64.86050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 64.86050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 64.86050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 64.86050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 64.86050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.86050 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 64.86050 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.86050 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.86050 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 64.86050 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 64.86050 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 64.86050 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 64.86050 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 64.86050 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 64.86050 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 64.86050 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 64.86050 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 64.86050 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 194.58150 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 129.72100 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 64.86050 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 129.72100 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -64.86050 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 194.58150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 350 LIES ON A SPECIAL POSITION. REMARK 375 O2 SO4 A 350 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 335 REMARK 465 GLN A 336 REMARK 465 SER A 337 REMARK 465 ARG A 338 REMARK 465 PRO A 339 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 125 OE2 GLU A 125 15656 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 141.78 -171.74 REMARK 500 MET A 50 -63.35 -123.93 REMARK 500 GLU A 144 124.54 110.89 REMARK 500 THR A 145 -101.34 -140.47 REMARK 500 ALA A 187 -62.37 -27.47 REMARK 500 PRO A 208 -77.36 -54.96 REMARK 500 PRO A 210 -19.32 -49.16 REMARK 500 ASP A 215 155.43 -35.78 REMARK 500 ILE A 239 -83.35 -56.95 REMARK 500 ALA A 244 101.69 -33.70 REMARK 500 LYS A 252 125.12 -174.20 REMARK 500 LEU A 295 153.99 72.36 REMARK 500 VAL A 301 -54.70 -142.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SN0 A 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP A 346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 350 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FG7 RELATED DB: PDB REMARK 900 THE HOMOLOG PROTEIN FROM B. FRAGILIS COMPLEXED WITH CARBAMYL REMARK 900 PHOSPHATE AND N-SUCCINYL-L-NORVALINE REMARK 900 RELATED ID: 3KZC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SULFATE REMARK 900 RELATED ID: 3KZK RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SULFATE AND N-ACETYL-L-CITRULLINE REMARK 900 RELATED ID: 3KZM RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CARBAMYL PHOSPHATE REMARK 900 RELATED ID: 3KZN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CARBAMYL PHOSPHATE REMARK 900 RELATED ID: 3KZO RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CARBAMYL PHOSPHATE AND N-ACETYL-L- REMARK 900 NORVALINE REMARK 900 RELATED ID: 3L02 RELATED DB: PDB REMARK 900 THE E92A MUTANT OF THE SAME PROTEIN COMPLEXED WITH CARBAMYL REMARK 900 PHOSPHATE AND N-SUCCINYL-L-NORVALINE REMARK 900 RELATED ID: 3L04 RELATED DB: PDB REMARK 900 THE E92P MUTANT OF THE SAME PROTEIN COMPLEXED WITH CARBAMYL REMARK 900 PHOSPHATE AND N-SUCCINYL-L-NORVALINE REMARK 900 RELATED ID: 3L05 RELATED DB: PDB REMARK 900 THE E92S MUTANT OF THE SAME PROTEIN COMPLEXED WITH CARBAMYL REMARK 900 PHOSPHATE AND N-SUCCINYL-L-NORVALINE DBREF 3L06 A 1 339 UNP Q8P8J2 AOTC_XANCP 1 339 SEQADV 3L06 MET A -19 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 GLY A -18 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 SER A -17 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 SER A -16 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 HIS A -15 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 HIS A -14 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 HIS A -13 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 HIS A -12 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 HIS A -11 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 HIS A -10 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 SER A -9 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 SER A -8 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 GLY A -7 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 LEU A -6 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 VAL A -5 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 PRO A -4 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 ARG A -3 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 GLY A -2 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 SER A -1 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 HIS A 0 UNP Q8P8J2 EXPRESSION TAG SEQADV 3L06 VAL A 92 UNP Q8P8J2 GLU 92 ENGINEERED MUTATION SEQRES 1 A 359 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 359 LEU VAL PRO ARG GLY SER HIS MET SER LEU LYS HIS PHE SEQRES 3 A 359 LEU ASN THR GLN ASP TRP SER ARG ALA GLU LEU ASP ALA SEQRES 4 A 359 LEU LEU THR GLN ALA ALA LEU PHE LYS ARG ASN LYS LEU SEQRES 5 A 359 GLY SER GLU LEU LYS GLY LYS SER ILE ALA LEU VAL PHE SEQRES 6 A 359 PHE ASN PRO SER MET ARG THR ARG THR SER PHE GLU LEU SEQRES 7 A 359 GLY ALA PHE GLN LEU GLY GLY HIS ALA VAL VAL LEU GLN SEQRES 8 A 359 PRO GLY LYS ASP ALA TRP PRO ILE GLU PHE ASN LEU GLY SEQRES 9 A 359 THR VAL MET ASP GLY ASP THR VAL GLU HIS ILE ALA GLU SEQRES 10 A 359 VAL ALA ARG VAL LEU GLY ARG TYR VAL ASP LEU ILE GLY SEQRES 11 A 359 VAL ARG ALA PHE PRO LYS PHE VAL ASP TRP SER LYS ASP SEQRES 12 A 359 ARG GLU ASP GLN VAL LEU LYS SER PHE ALA LYS TYR SER SEQRES 13 A 359 PRO VAL PRO VAL ILE ASN MET GLU THR ILE THR HIS PRO SEQRES 14 A 359 CYS GLN GLU LEU ALA HIS ALA LEU ALA LEU GLN GLU HIS SEQRES 15 A 359 PHE GLY THR PRO ASP LEU ARG GLY LYS LYS TYR VAL LEU SEQRES 16 A 359 THR TRP THR TYR HIS PRO LYS PRO LEU ASN THR ALA VAL SEQRES 17 A 359 ALA ASN SER ALA LEU THR ILE ALA THR ARG MET GLY MET SEQRES 18 A 359 ASP VAL THR LEU LEU CYS PRO THR PRO ASP TYR ILE LEU SEQRES 19 A 359 ASP GLU ARG TYR MET ASP TRP ALA ALA GLN ASN VAL ALA SEQRES 20 A 359 GLU SER GLY GLY SER LEU GLN VAL SER HIS ASP ILE ASP SEQRES 21 A 359 SER ALA TYR ALA GLY ALA ASP VAL VAL TYR ALA LYS SER SEQRES 22 A 359 TRP GLY ALA LEU PRO PHE PHE GLY ASN TRP GLU PRO GLU SEQRES 23 A 359 LYS PRO ILE ARG ASP GLN TYR GLN HIS PHE ILE VAL ASP SEQRES 24 A 359 GLU ARG LYS MET ALA LEU THR ASN ASN GLY VAL PHE SER SEQRES 25 A 359 HIS CYS LEU PRO LEU ARG ARG ASN VAL KCX ALA THR ASP SEQRES 26 A 359 ALA VAL MET ASP SER PRO ASN CYS ILE ALA ILE ASP GLU SEQRES 27 A 359 ALA GLU ASN ARG LEU HIS VAL GLN LYS ALA ILE MET ALA SEQRES 28 A 359 ALA LEU VAL GLY GLN SER ARG PRO MODRES 3L06 KCX A 302 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 302 12 HET SN0 A 345 15 HET CP A 346 8 HET SO4 A 350 5 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SN0 N-(3-CARBOXYPROPANOYL)-L-NORVALINE HETNAM CP PHOSPHORIC ACID MONO(FORMAMIDE)ESTER HETNAM SO4 SULFATE ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 SN0 C9 H15 N O5 FORMUL 3 CP C H4 N O5 P FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *44(H2 O) HELIX 1 1 ASN A 8 TRP A 12 5 5 HELIX 2 2 SER A 13 LYS A 28 1 16 HELIX 3 3 MET A 50 LEU A 63 1 14 HELIX 4 4 ILE A 95 VAL A 106 1 12 HELIX 5 5 ASP A 119 ARG A 124 1 6 HELIX 6 6 ASP A 126 SER A 136 1 11 HELIX 7 7 HIS A 148 PHE A 163 1 16 HELIX 8 8 THR A 186 MET A 199 1 14 HELIX 9 9 THR A 209 ILE A 213 5 5 HELIX 10 10 ASP A 215 GLY A 230 1 16 HELIX 11 11 ASP A 238 ALA A 244 1 7 HELIX 12 12 ALA A 256 PHE A 260 5 5 HELIX 13 13 TRP A 263 PRO A 265 5 3 HELIX 14 14 GLU A 266 ASP A 271 1 6 HELIX 15 15 GLN A 272 ILE A 277 5 6 HELIX 16 16 ASP A 279 LEU A 285 1 7 HELIX 17 17 THR A 304 SER A 310 1 7 HELIX 18 18 ILE A 314 VAL A 334 1 21 SHEET 1 A 4 HIS A 66 LEU A 70 0 SHEET 2 A 4 SER A 40 PHE A 45 1 N LEU A 43 O LEU A 70 SHEET 3 A 4 LEU A 108 ARG A 112 1 O GLY A 110 N VAL A 44 SHEET 4 A 4 VAL A 140 ASN A 142 1 O ILE A 141 N ILE A 109 SHEET 1 B 2 ILE A 79 GLU A 80 0 SHEET 2 B 2 GLU A 93 HIS A 94 1 O GLU A 93 N GLU A 80 SHEET 1 C 5 SER A 232 SER A 236 0 SHEET 2 C 5 ASP A 202 LEU A 206 1 N LEU A 205 O GLN A 234 SHEET 3 C 5 TYR A 173 TRP A 177 1 N TRP A 177 O LEU A 206 SHEET 4 C 5 VAL A 248 LYS A 252 1 O VAL A 248 N VAL A 174 SHEET 5 C 5 VAL A 290 SER A 292 1 O SER A 292 N VAL A 249 LINK C KCX A 302 N ALA A 303 1555 1555 1.33 CISPEP 1 LEU A 295 PRO A 296 0 0.00 SITE 1 AC1 15 TRP A 77 VAL A 92 PHE A 114 GLU A 144 SITE 2 AC1 15 HIS A 180 LEU A 184 ASN A 185 LYS A 252 SITE 3 AC1 15 LEU A 295 ARG A 298 HOH A 341 CP A 346 SITE 4 AC1 15 HOH A 368 HOH A 377 HOH A 381 SITE 1 AC2 12 SER A 49 MET A 50 ARG A 51 THR A 52 SITE 2 AC2 12 TRP A 77 ARG A 112 HIS A 148 GLN A 151 SITE 3 AC2 12 CYS A 294 LEU A 295 ARG A 322 SN0 A 345 SITE 1 AC3 2 HIS A 66 HOH A 352 CRYST1 129.721 129.721 129.721 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007709 0.00000 MASTER 437 0 4 18 11 0 8 6 0 0 0 28 END