HEADER SIGNALING PROTEIN 06-NOV-09 3KKO TITLE CRYSTAL STRUCTURE OF M-RAS P40D/D41E/L51R IN COMPLEX WITH GPPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN M-RAS; COMPND 3 CHAIN: A, B, P; COMPND 4 FRAGMENT: G DOMAIN, UNP RESIDUES 1-178; COMPND 5 SYNONYM: RAS-RELATED PROTEIN R-RAS3, MUSCLE AND MICROSPIKES RAS, X- COMPND 6 RAS; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS GTP-BINDING, GTPASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MURAOKA,F.SHIMA,J.LIAO,Y.IJIRI,K.MATSUMOTO,M.YE,T.INOUE,T.KATAOKA REVDAT 2 12-FEB-14 3KKO 1 JRNL VERSN REVDAT 1 16-JUN-10 3KKO 0 JRNL AUTH F.SHIMA,Y.IJIRI,S.MURAOKA,J.LIAO,M.YE,M.ARAKI,K.MATSUMOTO, JRNL AUTH 2 N.YAMAMOTO,T.SUGIMOTO,Y.YOSHIKAWA,T.KUMASAKA,M.YAMAMOTO, JRNL AUTH 3 A.TAMURA,T.KATAOKA JRNL TITL STRUCTURAL BASIS FOR CONFORMATIONAL DYNAMICS OF GTP-BOUND JRNL TITL 2 RAS PROTEIN JRNL REF J.BIOL.CHEM. V. 285 22696 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20479006 JRNL DOI 10.1074/JBC.M110.125161 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 49403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2649 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4512 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6146 ; 1.198 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 5.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;39.877 ;24.079 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 801 ;12.996 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 663 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3428 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2120 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3056 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 397 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.039 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2718 ; 0.732 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4290 ; 1.157 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2069 ; 1.677 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1856 ; 2.679 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB056111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : 0.28200 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1X1S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, PEG- REMARK 280 4000, GLYCEROL, PH 5.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.09800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.61750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 96.12400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 21.61750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.09800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 96.12400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 PRO B 7 REMARK 465 SER B 8 REMARK 465 GLU B 9 REMARK 465 GLY P -4 REMARK 465 PRO P -3 REMARK 465 LEU P -2 REMARK 465 GLY P -1 REMARK 465 SER P 0 REMARK 465 MET P 1 REMARK 465 ALA P 2 REMARK 465 THR P 3 REMARK 465 SER P 4 REMARK 465 ALA P 5 REMARK 465 VAL P 6 REMARK 465 PRO P 7 REMARK 465 SER P 8 REMARK 465 GLU P 9 REMARK 465 ASN P 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 104 OH TYR A 148 2.09 REMARK 500 OD1 ASP B 104 OH TYR B 148 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 46 -61.09 -95.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG P 180 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP P 179 O2G REMARK 620 2 GNP P 179 O2B 100.8 REMARK 620 3 HOH P1002 O 94.3 90.2 REMARK 620 4 HOH P1001 O 91.6 90.0 174.0 REMARK 620 5 SER P 27 OG 168.1 90.8 88.2 85.8 REMARK 620 6 THR P 45 OG1 89.1 169.8 91.4 87.3 79.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 180 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP A 179 O2G REMARK 620 2 GNP A 179 O2B 96.2 REMARK 620 3 THR A 45 OG1 86.3 177.4 REMARK 620 4 SER A 27 OG 171.1 92.7 84.8 REMARK 620 5 HOH A1002 O 90.1 88.9 90.9 89.4 REMARK 620 6 HOH A1001 O 90.6 89.9 90.2 90.0 178.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 180 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP B 179 O2G REMARK 620 2 SER B 27 OG 169.4 REMARK 620 3 GNP B 179 O2B 94.7 93.8 REMARK 620 4 HOH B1002 O 86.5 87.7 86.3 REMARK 620 5 HOH B1001 O 96.0 89.6 94.7 177.1 REMARK 620 6 THR B 45 OG1 87.8 82.9 172.3 86.6 92.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP P 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG P 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 P 181 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X1S RELATED DB: PDB REMARK 900 RELATED ID: 1X1R RELATED DB: PDB REMARK 900 RELATED ID: 3KKM RELATED DB: PDB REMARK 900 RELATED ID: 3KKN RELATED DB: PDB REMARK 900 RELATED ID: 3KKP RELATED DB: PDB REMARK 900 RELATED ID: 3KKQ RELATED DB: PDB DBREF 3KKO A 1 178 UNP O08989 RASM_MOUSE 1 178 DBREF 3KKO B 1 178 UNP O08989 RASM_MOUSE 1 178 DBREF 3KKO P 1 178 UNP O08989 RASM_MOUSE 1 178 SEQADV 3KKO GLY A -4 UNP O08989 EXPRESSION TAG SEQADV 3KKO PRO A -3 UNP O08989 EXPRESSION TAG SEQADV 3KKO LEU A -2 UNP O08989 EXPRESSION TAG SEQADV 3KKO GLY A -1 UNP O08989 EXPRESSION TAG SEQADV 3KKO SER A 0 UNP O08989 EXPRESSION TAG SEQADV 3KKO ASP A 40 UNP O08989 PRO 40 ENGINEERED MUTATION SEQADV 3KKO GLU A 41 UNP O08989 ASP 41 ENGINEERED MUTATION SEQADV 3KKO ARG A 51 UNP O08989 LEU 51 ENGINEERED MUTATION SEQADV 3KKO GLY B -4 UNP O08989 EXPRESSION TAG SEQADV 3KKO PRO B -3 UNP O08989 EXPRESSION TAG SEQADV 3KKO LEU B -2 UNP O08989 EXPRESSION TAG SEQADV 3KKO GLY B -1 UNP O08989 EXPRESSION TAG SEQADV 3KKO SER B 0 UNP O08989 EXPRESSION TAG SEQADV 3KKO ASP B 40 UNP O08989 PRO 40 ENGINEERED MUTATION SEQADV 3KKO GLU B 41 UNP O08989 ASP 41 ENGINEERED MUTATION SEQADV 3KKO ARG B 51 UNP O08989 LEU 51 ENGINEERED MUTATION SEQADV 3KKO GLY P -4 UNP O08989 EXPRESSION TAG SEQADV 3KKO PRO P -3 UNP O08989 EXPRESSION TAG SEQADV 3KKO LEU P -2 UNP O08989 EXPRESSION TAG SEQADV 3KKO GLY P -1 UNP O08989 EXPRESSION TAG SEQADV 3KKO SER P 0 UNP O08989 EXPRESSION TAG SEQADV 3KKO ASP P 40 UNP O08989 PRO 40 ENGINEERED MUTATION SEQADV 3KKO GLU P 41 UNP O08989 ASP 41 ENGINEERED MUTATION SEQADV 3KKO ARG P 51 UNP O08989 LEU 51 ENGINEERED MUTATION SEQRES 1 A 183 GLY PRO LEU GLY SER MET ALA THR SER ALA VAL PRO SER SEQRES 2 A 183 GLU ASN LEU PRO THR TYR LYS LEU VAL VAL VAL GLY ASP SEQRES 3 A 183 GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN PHE PHE SEQRES 4 A 183 GLN LYS ILE PHE VAL ASP GLU TYR ASP PRO THR ILE GLU SEQRES 5 A 183 ASP SER TYR ARG LYS HIS THR GLU ILE ASP ASN GLN TRP SEQRES 6 A 183 ALA ILE LEU ASP VAL LEU ASP THR ALA GLY GLN GLU GLU SEQRES 7 A 183 PHE SER ALA MET ARG GLU GLN TYR MET ARG THR GLY ASP SEQRES 8 A 183 GLY PHE LEU ILE VAL TYR SER VAL THR ASP LYS ALA SER SEQRES 9 A 183 PHE GLU HIS VAL ASP ARG PHE HIS GLN LEU ILE LEU ARG SEQRES 10 A 183 VAL LYS ASP ARG GLU SER PHE PRO MET ILE LEU VAL ALA SEQRES 11 A 183 ASN LYS VAL ASP LEU MET HIS LEU ARG LYS VAL THR ARG SEQRES 12 A 183 ASP GLN GLY LYS GLU MET ALA THR LYS TYR ASN ILE PRO SEQRES 13 A 183 TYR ILE GLU THR SER ALA LYS ASP PRO PRO LEU ASN VAL SEQRES 14 A 183 ASP LYS THR PHE HIS ASP LEU VAL ARG VAL ILE ARG GLN SEQRES 15 A 183 GLN SEQRES 1 B 183 GLY PRO LEU GLY SER MET ALA THR SER ALA VAL PRO SER SEQRES 2 B 183 GLU ASN LEU PRO THR TYR LYS LEU VAL VAL VAL GLY ASP SEQRES 3 B 183 GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN PHE PHE SEQRES 4 B 183 GLN LYS ILE PHE VAL ASP GLU TYR ASP PRO THR ILE GLU SEQRES 5 B 183 ASP SER TYR ARG LYS HIS THR GLU ILE ASP ASN GLN TRP SEQRES 6 B 183 ALA ILE LEU ASP VAL LEU ASP THR ALA GLY GLN GLU GLU SEQRES 7 B 183 PHE SER ALA MET ARG GLU GLN TYR MET ARG THR GLY ASP SEQRES 8 B 183 GLY PHE LEU ILE VAL TYR SER VAL THR ASP LYS ALA SER SEQRES 9 B 183 PHE GLU HIS VAL ASP ARG PHE HIS GLN LEU ILE LEU ARG SEQRES 10 B 183 VAL LYS ASP ARG GLU SER PHE PRO MET ILE LEU VAL ALA SEQRES 11 B 183 ASN LYS VAL ASP LEU MET HIS LEU ARG LYS VAL THR ARG SEQRES 12 B 183 ASP GLN GLY LYS GLU MET ALA THR LYS TYR ASN ILE PRO SEQRES 13 B 183 TYR ILE GLU THR SER ALA LYS ASP PRO PRO LEU ASN VAL SEQRES 14 B 183 ASP LYS THR PHE HIS ASP LEU VAL ARG VAL ILE ARG GLN SEQRES 15 B 183 GLN SEQRES 1 P 183 GLY PRO LEU GLY SER MET ALA THR SER ALA VAL PRO SER SEQRES 2 P 183 GLU ASN LEU PRO THR TYR LYS LEU VAL VAL VAL GLY ASP SEQRES 3 P 183 GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN PHE PHE SEQRES 4 P 183 GLN LYS ILE PHE VAL ASP GLU TYR ASP PRO THR ILE GLU SEQRES 5 P 183 ASP SER TYR ARG LYS HIS THR GLU ILE ASP ASN GLN TRP SEQRES 6 P 183 ALA ILE LEU ASP VAL LEU ASP THR ALA GLY GLN GLU GLU SEQRES 7 P 183 PHE SER ALA MET ARG GLU GLN TYR MET ARG THR GLY ASP SEQRES 8 P 183 GLY PHE LEU ILE VAL TYR SER VAL THR ASP LYS ALA SER SEQRES 9 P 183 PHE GLU HIS VAL ASP ARG PHE HIS GLN LEU ILE LEU ARG SEQRES 10 P 183 VAL LYS ASP ARG GLU SER PHE PRO MET ILE LEU VAL ALA SEQRES 11 P 183 ASN LYS VAL ASP LEU MET HIS LEU ARG LYS VAL THR ARG SEQRES 12 P 183 ASP GLN GLY LYS GLU MET ALA THR LYS TYR ASN ILE PRO SEQRES 13 P 183 TYR ILE GLU THR SER ALA LYS ASP PRO PRO LEU ASN VAL SEQRES 14 P 183 ASP LYS THR PHE HIS ASP LEU VAL ARG VAL ILE ARG GLN SEQRES 15 P 183 GLN HET GNP A 179 32 HET MG A 180 1 HET SO4 A 181 5 HET GNP B 179 32 HET MG B 180 1 HET SO4 B 181 5 HET GNP P 179 32 HET MG P 180 1 HET SO4 P 181 5 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 4 GNP 3(C10 H17 N6 O13 P3) FORMUL 5 MG 3(MG 2+) FORMUL 6 SO4 3(O4 S 2-) FORMUL 13 HOH *415(H2 O) HELIX 1 1 GLY A 25 LYS A 36 1 12 HELIX 2 2 GLN A 71 GLU A 73 5 3 HELIX 3 3 PHE A 74 THR A 84 1 11 HELIX 4 4 ASP A 96 HIS A 102 1 7 HELIX 5 5 HIS A 102 ASP A 115 1 14 HELIX 6 6 THR A 137 TYR A 148 1 12 HELIX 7 7 ASN A 163 ARG A 176 1 14 HELIX 8 8 GLY B 25 LYS B 36 1 12 HELIX 9 9 GLN B 71 GLU B 73 5 3 HELIX 10 10 PHE B 74 ARG B 83 1 10 HELIX 11 11 ASP B 96 HIS B 102 1 7 HELIX 12 12 HIS B 102 ASP B 115 1 14 HELIX 13 13 LEU B 130 ARG B 134 5 5 HELIX 14 14 THR B 137 ASN B 149 1 13 HELIX 15 15 ASN B 163 GLN B 177 1 15 HELIX 16 16 GLY P 25 LYS P 36 1 12 HELIX 17 17 GLN P 71 GLU P 73 5 3 HELIX 18 18 PHE P 74 ARG P 83 1 10 HELIX 19 19 ASP P 96 HIS P 102 1 7 HELIX 20 20 HIS P 102 ASP P 115 1 14 HELIX 21 21 LEU P 130 ARG P 134 5 5 HELIX 22 22 THR P 137 TYR P 148 1 12 HELIX 23 23 ASN P 163 GLN P 178 1 16 SHEET 1 A 6 GLU A 47 ILE A 56 0 SHEET 2 A 6 GLN A 59 THR A 68 -1 O LEU A 63 N LYS A 52 SHEET 3 A 6 THR A 13 VAL A 19 1 N VAL A 18 O LEU A 66 SHEET 4 A 6 GLY A 87 SER A 93 1 O VAL A 91 N VAL A 19 SHEET 5 A 6 MET A 121 ASN A 126 1 O VAL A 124 N ILE A 90 SHEET 6 A 6 TYR A 152 GLU A 154 1 O ILE A 153 N ALA A 125 SHEET 1 B 6 GLU B 47 ILE B 56 0 SHEET 2 B 6 GLN B 59 THR B 68 -1 O ASP B 67 N ASP B 48 SHEET 3 B 6 THR B 13 VAL B 19 1 N LEU B 16 O LEU B 66 SHEET 4 B 6 GLY B 87 SER B 93 1 O LEU B 89 N VAL B 19 SHEET 5 B 6 MET B 121 ASN B 126 1 O VAL B 124 N ILE B 90 SHEET 6 B 6 TYR B 152 GLU B 154 1 O ILE B 153 N ALA B 125 SHEET 1 C 6 GLU P 47 ILE P 56 0 SHEET 2 C 6 GLN P 59 THR P 68 -1 O VAL P 65 N TYR P 50 SHEET 3 C 6 THR P 13 VAL P 19 1 N VAL P 18 O LEU P 66 SHEET 4 C 6 GLY P 87 SER P 93 1 O VAL P 91 N VAL P 19 SHEET 5 C 6 MET P 121 ASN P 126 1 O ASN P 126 N TYR P 92 SHEET 6 C 6 TYR P 152 GLU P 154 1 O ILE P 153 N ALA P 125 LINK O2G GNP P 179 MG MG P 180 1555 1555 1.93 LINK O2G GNP A 179 MG MG A 180 1555 1555 1.96 LINK O2G GNP B 179 MG MG B 180 1555 1555 1.98 LINK O2B GNP P 179 MG MG P 180 1555 1555 2.03 LINK O2B GNP A 179 MG MG A 180 1555 1555 2.04 LINK OG SER B 27 MG MG B 180 1555 1555 2.06 LINK OG1 THR A 45 MG MG A 180 1555 1555 2.06 LINK OG SER A 27 MG MG A 180 1555 1555 2.06 LINK MG MG P 180 O HOH P1002 1555 1555 2.06 LINK MG MG A 180 O HOH A1002 1555 1555 2.09 LINK O2B GNP B 179 MG MG B 180 1555 1555 2.10 LINK MG MG B 180 O HOH B1002 1555 1555 2.11 LINK MG MG B 180 O HOH B1001 1555 1555 2.13 LINK OG1 THR B 45 MG MG B 180 1555 1555 2.15 LINK MG MG A 180 O HOH A1001 1555 1555 2.15 LINK MG MG P 180 O HOH P1001 1555 1555 2.16 LINK OG SER P 27 MG MG P 180 1555 1555 2.17 LINK OG1 THR P 45 MG MG P 180 1555 1555 2.18 CISPEP 1 ASP A 159 PRO A 160 0 -7.08 CISPEP 2 ASP B 159 PRO B 160 0 -4.76 CISPEP 3 ASP P 159 PRO P 160 0 -5.83 SITE 1 AC1 30 GLY A 22 GLY A 23 VAL A 24 GLY A 25 SITE 2 AC1 30 LYS A 26 SER A 27 ALA A 28 PHE A 38 SITE 3 AC1 30 VAL A 39 ASP A 40 GLU A 41 TYR A 42 SITE 4 AC1 30 PRO A 44 THR A 45 GLY A 70 ASN A 126 SITE 5 AC1 30 LYS A 127 ASP A 129 LEU A 130 SER A 156 SITE 6 AC1 30 ALA A 157 MG A 180 HOH A1001 HOH A1002 SITE 7 AC1 30 HOH A1003 HOH A1004 HOH A1005 HOH A1053 SITE 8 AC1 30 HOH A1109 HOH A1127 SITE 1 AC2 5 SER A 27 THR A 45 GNP A 179 HOH A1001 SITE 2 AC2 5 HOH A1002 SITE 1 AC3 5 LYS A 166 HIS A 169 ARG A 173 HOH A1113 SITE 2 AC3 5 HOH A1150 SITE 1 AC4 29 HOH A1066 GLY B 22 GLY B 23 VAL B 24 SITE 2 AC4 29 GLY B 25 LYS B 26 SER B 27 ALA B 28 SITE 3 AC4 29 PHE B 38 VAL B 39 ASP B 40 GLU B 41 SITE 4 AC4 29 PRO B 44 THR B 45 GLY B 70 ASN B 126 SITE 5 AC4 29 LYS B 127 ASP B 129 LEU B 130 SER B 156 SITE 6 AC4 29 ALA B 157 LYS B 158 MG B 180 HOH B1001 SITE 7 AC4 29 HOH B1002 HOH B1003 HOH B1004 HOH B1009 SITE 8 AC4 29 HOH B1035 SITE 1 AC5 5 SER B 27 THR B 45 GNP B 179 HOH B1001 SITE 2 AC5 5 HOH B1002 SITE 1 AC6 3 LYS B 166 HIS B 169 ARG B 173 SITE 1 AC7 27 GLY P 22 GLY P 23 VAL P 24 GLY P 25 SITE 2 AC7 27 LYS P 26 SER P 27 ALA P 28 PHE P 38 SITE 3 AC7 27 VAL P 39 ASP P 40 GLU P 41 TYR P 42 SITE 4 AC7 27 THR P 45 GLY P 70 ASN P 126 LYS P 127 SITE 5 AC7 27 ASP P 129 LEU P 130 SER P 156 ALA P 157 SITE 6 AC7 27 MG P 180 HOH P1001 HOH P1002 HOH P1003 SITE 7 AC7 27 HOH P1004 HOH P1018 HOH P1026 SITE 1 AC8 5 SER P 27 THR P 45 GNP P 179 HOH P1001 SITE 2 AC8 5 HOH P1002 SITE 1 AC9 4 LYS P 166 HIS P 169 ARG P 173 HOH P1114 CRYST1 78.196 192.248 43.235 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012788 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023129 0.00000 MASTER 413 0 9 23 18 0 33 6 0 0 0 45 END