HEADER STRUCTURAL PROTEIN 21-OCT-09 3KCP TITLE CRYSTAL STRUCTURE OF INTERACTING CLOSTRIDIUM THERMOCELLUM TITLE 2 MULTIMODULAR COMPONENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSOMAL-SCAFFOLDING PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COHESIN 9 AND DOCKERIN 1-2 DOMAINS: UNP RESIDUES COMPND 5 1542-1853; COMPND 6 SYNONYM: CELLULOSOMAL GLYCOPROTEIN S1/SL, CELLULOSE- COMPND 7 INTEGRATING PROTEIN A, COHESIN; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CELLULOSOME ANCHORING PROTEIN, COHESIN REGION; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 27-200; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CIPA, CTHE_3077; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 10 ORGANISM_TAXID: 203119; SOURCE 11 STRAIN: ATCC 27405 / DSM 1237; SOURCE 12 GENE: CTHE_1307, SDBA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COHESIN, DOCKERIN, X-MODULE, CELLULOSOME, CARBOHYDRATE KEYWDS 2 METABOLISM, CELL WALL BIOGENESIS/DEGRADATION, CELLULOSE KEYWDS 3 DEGRADATION, GLYCOPROTEIN, POLYSACCHARIDE DEGRADATION, KEYWDS 4 SECRETED, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.J.ADAMS,M.A.CURRIE,E.A.BAYER,Z.JIA,S.P.SMITH REVDAT 2 02-MAR-10 3KCP 1 JRNL REVDAT 1 09-FEB-10 3KCP 0 JRNL AUTH J.J.ADAMS,M.A.CURRIE,S.ALI,E.A.BAYER,Z.JIA, JRNL AUTH 2 S.P.SMITH JRNL TITL INSIGHTS INTO HIGHER-ORDER ORGANIZATION OF THE JRNL TITL 2 CELLULOSOME REVEALED BY A DISSECT-AND-BUILD JRNL TITL 3 APPROACH: CRYSTAL STRUCTURE OF INTERACTING JRNL TITL 4 CLOSTRIDIUM THERMOCELLUM MULTIMODULAR COMPONENTS JRNL REF J.MOL.BIOL. V. 396 833 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20070943 JRNL DOI 10.1016/J.JMB.2010.01.015 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 39350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2087 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3609 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4907 ; 1.679 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 6.333 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;37.213 ;25.724 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;14.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2719 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1630 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2512 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 263 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.123 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2366 ; 1.145 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3742 ; 1.792 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 2.863 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1165 ; 4.207 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3KCP COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB055826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 42.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 200 MM AMMONIUM REMARK 280 SULFATE, 30% W/V PEG 3350, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 84.98850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.98850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 ASP A 311 REMARK 465 ALA A 312 REMARK 465 GLN A 313 REMARK 465 LEU A 314 REMARK 465 GLU A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 MET B 423 REMARK 465 ARG B 424 REMARK 465 GLY B 425 REMARK 465 SER B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 THR B 433 REMARK 465 ASP B 434 REMARK 465 LEU B 435 REMARK 465 ARG B 436 REMARK 465 ALA B 437 REMARK 465 ASP B 438 REMARK 465 LYS B 439 REMARK 465 ALA B 440 REMARK 465 LEU B 604 REMARK 465 GLY B 605 REMARK 465 ASP B 606 REMARK 465 GLU B 607 REMARK 465 PRO B 608 REMARK 465 TYR B 609 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C TYR A 310 O HOH A 462 1.64 REMARK 500 O HOH A 463 O HOH A 466 2.11 REMARK 500 O HOH B 223 O HOH B 236 2.13 REMARK 500 NH1 ARG B 504 O LEU B 507 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 89 CB GLU A 89 CG 0.164 REMARK 500 CYS A 269 CB CYS A 269 SG -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 449 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 504 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 221 -9.69 82.57 REMARK 500 ASP A 255 19.56 -142.31 REMARK 500 ARG A 287 29.99 48.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 140 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 VAL A 253 O 74.1 REMARK 620 3 ASP A 255 OD1 87.5 83.9 REMARK 620 4 SER A 257 O 85.8 154.9 80.3 REMARK 620 5 ASP A 262 OD1 104.2 81.7 158.1 118.5 REMARK 620 6 ASP A 262 OD2 126.8 130.0 134.3 74.3 50.9 REMARK 620 7 HOH A 346 O 154.4 83.4 78.0 111.9 84.0 77.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 284 OD1 REMARK 620 2 ASN A 286 OD1 88.2 REMARK 620 3 ASN A 288 OD1 89.9 76.3 REMARK 620 4 ALA A 290 O 84.6 157.3 82.1 REMARK 620 5 ASP A 295 OD1 95.4 76.7 152.3 125.4 REMARK 620 6 ASP A 295 OD2 107.8 127.2 149.7 75.5 52.5 REMARK 620 7 HOH A 345 O 172.0 87.3 82.6 97.1 90.0 80.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 703 DBREF 3KCP A 2 313 UNP Q06851 CIPA_CLOTH 1542 1853 DBREF 3KCP B 436 609 UNP A3DF10 A3DF10_CLOTH 27 200 SEQADV 3KCP MET A 1 UNP Q06851 EXPRESSION TAG SEQADV 3KCP LEU A 314 UNP Q06851 EXPRESSION TAG SEQADV 3KCP GLU A 315 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 316 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 317 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 318 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 319 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 320 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 321 UNP Q06851 EXPRESSION TAG SEQADV 3KCP MET B 423 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP ARG B 424 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP GLY B 425 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP SER B 426 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 427 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 428 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 429 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 430 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 431 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 432 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP THR B 433 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP ASP B 434 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP LEU B 435 UNP A3DF10 EXPRESSION TAG SEQRES 1 A 321 MET PRO THR ILE THR PRO ASN LYS LEU THR LEU LYS ILE SEQRES 2 A 321 GLY ARG ALA GLU GLY ARG PRO GLY ASP THR VAL GLU ILE SEQRES 3 A 321 PRO VAL ASN LEU TYR GLY VAL PRO GLN LYS GLY ILE ALA SEQRES 4 A 321 SER GLY ASP PHE VAL VAL SER TYR ASP PRO ASN VAL LEU SEQRES 5 A 321 GLU ILE ILE GLU ILE GLU PRO GLY GLU LEU ILE VAL ASP SEQRES 6 A 321 PRO ASN PRO THR LYS SER PHE ASP THR ALA VAL TYR PRO SEQRES 7 A 321 ASP ARG LYS MET ILE VAL PHE LEU PHE ALA GLU ASP SER SEQRES 8 A 321 GLY THR GLY ALA TYR ALA ILE THR GLU ASP GLY VAL PHE SEQRES 9 A 321 ALA THR ILE VAL ALA LYS VAL LYS GLU GLY ALA PRO GLU SEQRES 10 A 321 GLY PHE SER ALA ILE GLU ILE SER GLU PHE GLY ALA PHE SEQRES 11 A 321 ALA ASP ASN ASP LEU VAL GLU VAL GLU THR ASP LEU ILE SEQRES 12 A 321 ASN GLY GLY VAL LEU VAL THR ASN LYS PRO VAL ILE GLU SEQRES 13 A 321 GLY TYR LYS VAL SER GLY TYR ILE LEU PRO ASP PHE SER SEQRES 14 A 321 PHE ASP ALA THR VAL ALA PRO LEU VAL LYS ALA GLY PHE SEQRES 15 A 321 LYS VAL GLU ILE VAL GLY THR GLU LEU TYR ALA VAL THR SEQRES 16 A 321 ASP ALA ASN GLY TYR PHE GLU ILE THR GLY VAL PRO ALA SEQRES 17 A 321 ASN ALA SER GLY TYR THR LEU LYS ILE SER ARG ALA THR SEQRES 18 A 321 TYR LEU ASP ARG VAL ILE ALA ASN VAL VAL VAL THR GLY SEQRES 19 A 321 ASP THR SER VAL SER THR SER GLN ALA PRO ILE MET MET SEQRES 20 A 321 TRP VAL GLY ASP ILE VAL LYS ASP ASN SER ILE ASN LEU SEQRES 21 A 321 LEU ASP VAL ALA GLU VAL ILE ARG CYS PHE ASN ALA THR SEQRES 22 A 321 LYS GLY SER ALA ASN TYR VAL GLU GLU LEU ASP ILE ASN SEQRES 23 A 321 ARG ASN GLY ALA ILE ASN MET GLN ASP ILE MET ILE VAL SEQRES 24 A 321 HIS LYS HIS PHE GLY ALA THR SER SER ASP TYR ASP ALA SEQRES 25 A 321 GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 187 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP LEU SEQRES 2 B 187 ARG ALA ASP LYS ALA SER SER ILE GLU LEU LYS PHE ASP SEQRES 3 B 187 ARG ASN LYS GLY GLU VAL GLY ASP ILE LEU ILE GLY THR SEQRES 4 B 187 VAL ARG ILE ASN ASN ILE LYS ASN PHE ALA GLY PHE GLN SEQRES 5 B 187 VAL ASN ILE VAL TYR ASP PRO LYS VAL LEU MET ALA VAL SEQRES 6 B 187 ASP PRO GLU THR GLY LYS GLU PHE THR SER SER THR PHE SEQRES 7 B 187 PRO PRO GLY ARG THR VAL LEU LYS ASN ASN ALA TYR GLY SEQRES 8 B 187 PRO ILE GLN ILE ALA ASP ASN ASP PRO GLU LYS GLY ILE SEQRES 9 B 187 LEU ASN PHE ALA LEU ALA TYR SER TYR ILE ALA GLY TYR SEQRES 10 B 187 LYS GLU THR GLY VAL ALA GLU GLU SER GLY ILE ILE ALA SEQRES 11 B 187 LYS ILE GLY PHE LYS ILE LEU GLN LYS LYS SER THR ALA SEQRES 12 B 187 VAL LYS PHE GLN ASP THR LEU SER MET PRO GLY ALA ILE SEQRES 13 B 187 SER GLY THR GLN LEU PHE ASP TRP ASP GLY GLU VAL ILE SEQRES 14 B 187 THR GLY TYR GLU VAL ILE GLN PRO ASP VAL LEU SER LEU SEQRES 15 B 187 GLY ASP GLU PRO TYR HET CA A 701 1 HET CA A 702 1 HET CL A 703 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CA 2(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 HOH *244(H2 O) HELIX 1 1 ASN A 67 LYS A 70 5 4 HELIX 2 2 PRO A 78 ARG A 80 5 3 HELIX 3 3 VAL A 174 ALA A 180 1 7 HELIX 4 4 ASN A 259 ARG A 268 1 10 HELIX 5 5 VAL A 280 ASP A 284 5 5 HELIX 6 6 ASN A 292 LYS A 301 1 10 HELIX 7 7 THR A 306 TYR A 310 5 5 HELIX 8 8 ASN B 509 TYR B 512 5 4 HELIX 9 9 ASP B 521 LYS B 524 5 4 HELIX 10 10 TYR B 535 GLY B 543 1 9 SHEET 1 A 5 LEU A 52 PRO A 59 0 SHEET 2 A 5 GLY A 102 VAL A 111 -1 O LYS A 110 N GLU A 53 SHEET 3 A 5 THR A 23 TYR A 31 -1 N VAL A 24 O ALA A 109 SHEET 4 A 5 THR A 10 ILE A 13 -1 N LYS A 12 O ASN A 29 SHEET 5 A 5 ASP A 141 ILE A 143 1 O ILE A 143 N ILE A 13 SHEET 1 B 6 ARG A 15 GLY A 18 0 SHEET 2 B 6 GLY A 145 VAL A 149 1 O LEU A 148 N ALA A 16 SHEET 3 B 6 GLY A 118 ALA A 131 -1 N GLY A 118 O VAL A 149 SHEET 4 B 6 SER A 40 SER A 46 -1 N VAL A 44 O GLU A 126 SHEET 5 B 6 MET A 82 ALA A 88 -1 O PHE A 85 N PHE A 43 SHEET 6 B 6 PHE A 72 TYR A 77 -1 N TYR A 77 O MET A 82 SHEET 1 C 4 ARG A 15 GLY A 18 0 SHEET 2 C 4 GLY A 145 VAL A 149 1 O LEU A 148 N ALA A 16 SHEET 3 C 4 GLY A 118 ALA A 131 -1 N GLY A 118 O VAL A 149 SHEET 4 C 4 GLU A 137 VAL A 138 -1 O VAL A 138 N PHE A 130 SHEET 1 D 3 TYR A 200 VAL A 206 0 SHEET 2 D 3 TYR A 158 PRO A 166 -1 N TYR A 158 O VAL A 206 SHEET 3 D 3 THR A 236 SER A 237 1 O THR A 236 N LYS A 159 SHEET 1 E 3 TYR A 200 VAL A 206 0 SHEET 2 E 3 TYR A 158 PRO A 166 -1 N TYR A 158 O VAL A 206 SHEET 3 E 3 ILE A 245 MET A 247 1 O ILE A 245 N TYR A 163 SHEET 1 F 4 TYR A 192 VAL A 194 0 SHEET 2 F 4 LYS A 183 ILE A 186 -1 N VAL A 184 O ALA A 193 SHEET 3 F 4 ASN A 209 SER A 218 -1 O SER A 218 N LYS A 183 SHEET 4 F 4 ARG A 225 VAL A 232 -1 O ILE A 227 N LEU A 215 SHEET 1 G 2 THR A 221 TYR A 222 0 SHEET 2 G 2 VAL A 249 ASP A 251 -1 O GLY A 250 N THR A 221 SHEET 1 H 5 LEU B 484 VAL B 487 0 SHEET 2 H 5 GLY B 549 ILE B 558 -1 O LYS B 557 N MET B 485 SHEET 3 H 5 ILE B 457 ASN B 465 -1 N GLY B 460 O ILE B 554 SHEET 4 H 5 SER B 442 PHE B 447 -1 N GLU B 444 O ARG B 463 SHEET 5 H 5 GLU B 595 ILE B 597 1 O ILE B 597 N ILE B 443 SHEET 1 I 4 PRO B 514 ALA B 518 0 SHEET 2 I 4 ILE B 526 TYR B 533 -1 O ALA B 530 N ILE B 517 SHEET 3 I 4 PHE B 470 VAL B 478 -1 N ILE B 477 O LEU B 527 SHEET 4 I 4 LYS B 567 PHE B 568 -1 O LYS B 567 N VAL B 478 SHEET 1 J 5 PRO B 514 ALA B 518 0 SHEET 2 J 5 ILE B 526 TYR B 533 -1 O ALA B 530 N ILE B 517 SHEET 3 J 5 PHE B 470 VAL B 478 -1 N ILE B 477 O LEU B 527 SHEET 4 J 5 THR B 581 ASP B 585 -1 O PHE B 584 N ALA B 471 SHEET 5 J 5 VAL B 590 ILE B 591 -1 O ILE B 591 N LEU B 583 LINK OD1 ASP A 251 CA CA A 702 1555 1555 2.37 LINK O VAL A 253 CA CA A 702 1555 1555 2.28 LINK OD1 ASP A 255 CA CA A 702 1555 1555 2.35 LINK O SER A 257 CA CA A 702 1555 1555 2.17 LINK OD1 ASP A 262 CA CA A 702 1555 1555 2.53 LINK OD2 ASP A 262 CA CA A 702 1555 1555 2.47 LINK OD1 ASP A 284 CA CA A 701 1555 1555 2.38 LINK OD1 ASN A 286 CA CA A 701 1555 1555 2.44 LINK OD1 ASN A 288 CA CA A 701 1555 1555 2.40 LINK O ALA A 290 CA CA A 701 1555 1555 2.30 LINK OD1 ASP A 295 CA CA A 701 1555 1555 2.52 LINK OD2 ASP A 295 CA CA A 701 1555 1555 2.55 LINK CA CA A 701 O HOH A 345 1555 1555 2.43 LINK CA CA A 702 O HOH A 346 1555 1555 2.45 SITE 1 AC1 6 ASP A 284 ASN A 286 ASN A 288 ALA A 290 SITE 2 AC1 6 ASP A 295 HOH A 345 SITE 1 AC2 6 ASP A 251 VAL A 253 ASP A 255 SER A 257 SITE 2 AC2 6 ASP A 262 HOH A 346 SITE 1 AC3 2 ARG A 225 MET A 246 CRYST1 169.977 58.019 56.150 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017809 0.00000 MASTER 416 0 3 10 41 0 5 6 0 0 0 40 END