HEADER VIRAL PROTEIN 20-OCT-09 3KC6 TITLE CRYSTAL STRUCTURE OF THE LARGE C-TERMINAL DOMAIN OF POLYMERASE BASIC TITLE 2 PROTEIN 2 FROM INFLUENZA VIRUS A/VIET NAM/1203/2004 (H5N1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PB2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYMERASE BASIC SUBUNIT 2, POLYMERASE PROTEIN PB2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/VIET NAM/1203/2004(H5N1)); SOURCE 3 ORGANISM_COMMON: A/VIET NAM/1203/2004(H5N1); SOURCE 4 ORGANISM_TAXID: 284218; SOURCE 5 STRAIN: A/VIET NAM/1203/2004 (H5N1); SOURCE 6 GENE: PB2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-SMT KEYWDS BIRD FLU, STRUCTURAL GENOMICS, NIAID, MRNA CAPPING, MRNA PROCESSING, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 23-MAY-12 3KC6 1 JRNL REVDAT 3 10-AUG-11 3KC6 1 JRNL REVDAT 2 13-JUL-11 3KC6 1 VERSN REVDAT 1 09-MAR-10 3KC6 0 JRNL AUTH S.YAMADA,M.HATTA,B.L.STAKER,S.WATANABE,M.IMAI,K.SHINYA, JRNL AUTH 2 Y.SAKAI-TAGAWA,M.ITO,M.OZAWA,T.WATANABE,S.SAKABE,C.LI, JRNL AUTH 3 J.H.KIM,P.J.MYLER,I.PHAN,A.RAYMOND,E.SMITH,R.STACY, JRNL AUTH 4 C.A.NIDOM,S.M.LANK,R.W.WISEMAN,B.N.BIMBER,D.H.O'CONNOR, JRNL AUTH 5 G.NEUMANN,L.J.STEWART,Y.KAWAOKA JRNL TITL BIOLOGICAL AND STRUCTURAL CHARACTERIZATION OF A JRNL TITL 2 HOST-ADAPTING AMINO ACID IN INFLUENZA VIRUS. JRNL REF PLOS PATHOG. V. 6 01034 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 20700447 JRNL DOI 10.1371/JOURNAL.PPAT.1001034 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 855 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.239 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1540 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1040 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2084 ; 1.187 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2538 ; 0.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 5.770 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;35.820 ;24.531 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;13.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.226 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 238 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1712 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 302 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 982 ; 0.582 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 401 ; 0.106 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1572 ; 1.054 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 558 ; 1.453 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 512 ; 2.396 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 540 A 626 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6000 4.7270 -23.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.1342 REMARK 3 T33: 0.1260 T12: -0.0061 REMARK 3 T13: -0.0017 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.7838 L22: 3.3660 REMARK 3 L33: 0.5261 L12: -0.0723 REMARK 3 L13: 0.2355 L23: -0.4638 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: 0.0008 S13: 0.0354 REMARK 3 S21: -0.2004 S22: 0.0758 S23: -0.0197 REMARK 3 S31: -0.0071 S32: 0.0594 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 627 A 663 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5730 -2.8360 -19.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.1255 REMARK 3 T33: 0.1917 T12: -0.0206 REMARK 3 T13: 0.0020 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.6428 L22: 5.6196 REMARK 3 L33: 1.2829 L12: -1.8950 REMARK 3 L13: 0.6355 L23: 0.0332 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.1152 S13: -0.1702 REMARK 3 S21: 0.1930 S22: 0.0607 S23: 0.5253 REMARK 3 S31: 0.1483 S32: -0.0515 S33: -0.0659 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 664 A 696 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9380 -2.8300 -14.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.1425 REMARK 3 T33: 0.1334 T12: 0.0359 REMARK 3 T13: -0.0379 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.5388 L22: 4.2070 REMARK 3 L33: 0.7221 L12: 0.2776 REMARK 3 L13: -0.5311 L23: 0.6944 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.1009 S13: -0.1536 REMARK 3 S21: 0.2994 S22: 0.0799 S23: -0.2602 REMARK 3 S31: -0.0424 S32: 0.0590 S33: -0.0917 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 697 A 739 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6770 3.4700 -0.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.1713 REMARK 3 T33: 0.0126 T12: 0.0943 REMARK 3 T13: 0.0624 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 4.5598 L22: 6.6891 REMARK 3 L33: 6.2027 L12: 0.9129 REMARK 3 L13: -2.2607 L23: -1.4678 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: -0.2953 S13: -0.1336 REMARK 3 S21: 0.2848 S22: -0.0336 S23: 0.2017 REMARK 3 S31: -0.2196 S32: -0.3007 S33: -0.0201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3KC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB055807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 10.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CW4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% SBOG, 100MM CAPS PH 10.5, 1.2 M REMARK 280 SODIUM PHOSPHATE, 0.2 M LITHIUM PHOSPHATE, 0.8 M POTASSIUM REMARK 280 PHOSPHATE. PROTEIN CONCENTRATION 8.25 MG/ML, VAPOR DIFFUSIONI, REMARK 280 SITTING DROP, TEMPERATURE 293K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.54200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.42750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.84800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.42750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.54200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.84800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 538 REMARK 465 ILE A 539 REMARK 465 GLY A 642 REMARK 465 SER A 643 REMARK 465 ASP A 740 REMARK 465 SER A 741 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 575 CG SD CE REMARK 470 LYS A 586 CG CD CE NZ REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 ARG A 630 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 641 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 646 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 660 CG CD CE NZ REMARK 470 LYS A 663 CG CD CE NZ REMARK 470 GLU A 677 CG CD OE1 OE2 REMARK 470 LYS A 702 CG CD CE NZ REMARK 470 ASN A 711 CG OD1 ND2 REMARK 470 LEU A 725 CG CD1 CD2 REMARK 470 ARG A 739 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 637 O HOH A 92 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 728 -135.01 52.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: INVAD.07055.A RELATED DB: TARGETDB DBREF 3KC6 A 538 741 UNP Q6DNN3 Q6DNN3_9INFA 538 741 SEQRES 1 A 204 GLU ILE ASN GLY PRO GLU SER VAL LEU VAL ASN THR TYR SEQRES 2 A 204 GLN TRP ILE ILE ARG ASN TRP GLU THR VAL LYS ILE GLN SEQRES 3 A 204 TRP SER GLN ASP PRO THR MET LEU TYR ASN LYS MET GLU SEQRES 4 A 204 PHE GLU PRO PHE GLN SER LEU VAL PRO LYS ALA ALA ARG SEQRES 5 A 204 GLY GLN TYR SER GLY PHE VAL ARG THR LEU PHE GLN GLN SEQRES 6 A 204 MET ARG ASP VAL LEU GLY THR PHE ASP THR VAL GLN ILE SEQRES 7 A 204 ILE LYS LEU LEU PRO PHE ALA ALA ALA PRO PRO LYS GLN SEQRES 8 A 204 SER ARG MET GLN PHE SER SER LEU THR VAL ASN VAL ARG SEQRES 9 A 204 GLY SER GLY MET ARG ILE LEU VAL ARG GLY ASN SER PRO SEQRES 10 A 204 VAL PHE ASN TYR ASN LYS ALA THR LYS ARG LEU THR VAL SEQRES 11 A 204 LEU GLY LYS ASP ALA GLY ALA LEU THR GLU ASP PRO ASP SEQRES 12 A 204 GLU GLY THR ALA GLY VAL GLU SER ALA VAL LEU ARG GLY SEQRES 13 A 204 PHE LEU ILE LEU GLY LYS GLU ASP LYS ARG TYR GLY PRO SEQRES 14 A 204 ALA LEU SER ILE ASN GLU LEU SER ASN LEU ALA LYS GLY SEQRES 15 A 204 GLU LYS ALA ASN VAL LEU ILE GLY GLN GLY ASP VAL VAL SEQRES 16 A 204 LEU VAL MET LYS ARG LYS ARG ASP SER HET EDO A 1 4 HET EDO A 3 4 HET EDO A 4 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 HOH *92(H2 O) HELIX 1 1 GLY A 541 ASN A 556 1 16 HELIX 2 2 ASN A 556 ASP A 567 1 12 HELIX 3 3 ASP A 567 ASN A 573 1 7 HELIX 4 4 LYS A 574 GLU A 576 5 3 HELIX 5 5 PHE A 577 VAL A 584 1 8 HELIX 6 6 PRO A 585 ALA A 587 5 3 HELIX 7 7 ALA A 588 VAL A 606 1 19 HELIX 8 8 ASP A 611 LEU A 619 1 9 HELIX 9 9 PRO A 620 ALA A 624 5 5 HELIX 10 10 ASP A 701 GLY A 705 5 5 HELIX 11 11 SER A 709 LEU A 713 5 5 SHEET 1 A 2 SER A 635 VAL A 638 0 SHEET 2 A 2 MET A 645 LEU A 648 -1 O ILE A 647 N LEU A 636 SHEET 1 B 3 PHE A 656 ASN A 659 0 SHEET 2 B 3 ARG A 664 VAL A 667 -1 O ARG A 664 N ASN A 659 SHEET 3 B 3 LYS A 670 ALA A 674 -1 O GLY A 673 N LEU A 665 SHEET 1 C 3 PHE A 694 LYS A 699 0 SHEET 2 C 3 ASP A 730 LYS A 736 -1 O LEU A 733 N LEU A 697 SHEET 3 C 3 LYS A 721 GLY A 727 -1 N ALA A 722 O VAL A 734 SITE 1 AC1 3 MET A 645 ARG A 646 THR A 676 SITE 1 AC2 8 HOH A 16 HOH A 34 HOH A 90 ARG A 589 SITE 2 AC2 8 GLY A 590 ALA A 624 PRO A 625 THR A 662 SITE 1 AC3 3 LYS A 574 MET A 575 GLU A 576 CRYST1 33.084 65.696 96.855 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010325 0.00000 MASTER 380 0 3 11 8 0 4 6 0 0 0 16 END