HEADER OXIDOREDUCTASE 13-OCT-09 3K7T TITLE CRYSTAL STRUCTURE OF APO-FORM 6-HYDROXY-L-NICOTINE OXIDASE, CRYSTAL TITLE 2 FORM P3121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-HYDROXY-L-NICOTINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.3.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER NICOTINOVORANS; SOURCE 3 ORGANISM_TAXID: 29320; SOURCE 4 GENE: 6-HLNO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS ENANTIOMERIC SUBSTRATES, FLAVOENZYMES, NICOTINE DEGRADATION, OXIDASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.P.BOURENKOV,G.S.KACHALOVA,H.D.BARTUNIK REVDAT 3 01-NOV-17 3K7T 1 REMARK REVDAT 2 02-MAR-10 3K7T 1 JRNL REVDAT 1 19-JAN-10 3K7T 0 JRNL AUTH G.S.KACHALOVA,G.P.BOURENKOV,T.MENGESDORF,S.SCHENK,H.R.MAUN, JRNL AUTH 2 M.BURGHAMMER,C.RIEKEL,K.DECKER,H.D.BARTUNIK JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF FREE AND SUBSTRATE-BOUND JRNL TITL 2 6-HYDROXY-L-NICOTINE OXIDASE FROM ARTHROBACTER JRNL TITL 3 NICOTINOVORANS. JRNL REF J.MOL.BIOL. V. 396 785 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20006620 JRNL DOI 10.1016/J.JMB.2009.12.009 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 38462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.278 REMARK 3 R VALUE (WORKING SET) : 0.275 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2792 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.4570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.72000 REMARK 3 B22 (A**2) : 3.72000 REMARK 3 B33 (A**2) : -5.58000 REMARK 3 B12 (A**2) : 1.86000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.621 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.393 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.345 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6890 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9374 ; 1.781 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 848 ; 7.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;36.675 ;23.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1054 ;18.815 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;17.515 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1030 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5236 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3139 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4594 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.294 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4286 ; 1.021 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6750 ; 1.853 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2979 ; 2.467 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2624 ; 4.256 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41084 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : 0.75000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLREP REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3K7M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.5M LITHIUM SULFATE, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.63933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.27867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 133.27867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.63933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 425 CB OG REMARK 470 SER B 425 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 370 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 92 45.05 -97.53 REMARK 500 LYS A 129 -147.53 -84.99 REMARK 500 HIS A 187 56.49 -94.31 REMARK 500 TYR A 189 70.10 40.72 REMARK 500 SER A 232 -81.34 -54.91 REMARK 500 LYS A 241 -82.67 -12.95 REMARK 500 ASP A 242 71.35 -67.09 REMARK 500 HIS A 244 179.24 -53.40 REMARK 500 ALA A 254 41.62 -108.79 REMARK 500 TYR A 313 -71.36 -105.89 REMARK 500 SER A 317 -157.50 -151.45 REMARK 500 PHE A 367 -50.53 -133.75 REMARK 500 PRO A 370 -76.04 -95.13 REMARK 500 HIS A 383 -55.24 -155.43 REMARK 500 ASP B 135 63.95 60.60 REMARK 500 ASP B 151 85.21 57.11 REMARK 500 HIS B 187 42.01 -87.83 REMARK 500 LEU B 196 42.82 -80.72 REMARK 500 LEU B 198 81.30 -68.52 REMARK 500 ASP B 199 -81.86 -106.58 REMARK 500 TYR B 313 -70.77 -100.47 REMARK 500 THR B 327 -157.63 -158.87 REMARK 500 PHE B 367 -51.13 -130.77 REMARK 500 PRO B 370 -88.76 -108.32 REMARK 500 HIS B 383 -72.06 -140.39 REMARK 500 ALA B 390 54.36 -102.98 REMARK 500 PHE B 404 79.41 -151.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GP7 A 435 REMARK 610 GP7 B 435 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GP7 A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GP7 B 435 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K7M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 6-HYDROXY-L-NICOTINE OXIDASE FROM ARTHROBACTER REMARK 900 NICOTINOVORANS REMARK 900 RELATED ID: 3K7Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBSTRATE-BOUND 6-HYDROXY-L-NICOTINE OXIDASE REMARK 900 FROM ARTHROBACTER NICOTINOVORANS DBREF 3K7T A 1 425 UNP Q93NH4 Q93NH4_ARTNI 1 425 DBREF 3K7T B 1 425 UNP Q93NH4 Q93NH4_ARTNI 1 425 SEQRES 1 A 425 MET TYR ASP ALA ILE VAL VAL GLY GLY GLY PHE SER GLY SEQRES 2 A 425 LEU LYS ALA ALA ARG ASP LEU THR ASN ALA GLY LYS LYS SEQRES 3 A 425 VAL LEU LEU LEU GLU GLY GLY GLU ARG LEU GLY GLY ARG SEQRES 4 A 425 ALA TYR SER ARG GLU SER ARG ASN VAL PRO GLY LEU ARG SEQRES 5 A 425 VAL GLU ILE GLY GLY ALA TYR LEU HIS ARG LYS HIS HIS SEQRES 6 A 425 PRO ARG LEU ALA ALA GLU LEU ASP ARG TYR GLY ILE PRO SEQRES 7 A 425 THR ALA ALA ALA SER GLU PHE THR SER PHE ARG HIS ARG SEQRES 8 A 425 LEU GLY PRO THR ALA VAL ASP GLN ALA PHE PRO ILE PRO SEQRES 9 A 425 GLY SER GLU ALA VAL ALA VAL GLU ALA ALA THR TYR THR SEQRES 10 A 425 LEU LEU ARG ASP ALA HIS ARG ILE ASP LEU GLU LYS GLY SEQRES 11 A 425 LEU GLU ASN GLN ASP LEU GLU ASP LEU ASP ILE PRO LEU SEQRES 12 A 425 ASN GLU TYR VAL ASP LYS LEU ASP LEU PRO PRO VAL SER SEQRES 13 A 425 ARG GLN PHE LEU LEU ALA TRP ALA TRP ASN MET LEU GLY SEQRES 14 A 425 GLN PRO ALA ASP GLN ALA SER ALA LEU TRP MET LEU GLN SEQRES 15 A 425 LEU VAL ALA ALA HIS HIS TYR SER ILE LEU GLY VAL VAL SEQRES 16 A 425 LEU SER LEU ASP GLU VAL PHE SER ASN GLY SER ALA ASP SEQRES 17 A 425 LEU VAL ASP ALA MET SER GLN GLU ILE PRO GLU ILE ARG SEQRES 18 A 425 LEU GLN THR VAL VAL THR GLY ILE ASP GLN SER GLY ASP SEQRES 19 A 425 VAL VAL ASN VAL THR VAL LYS ASP GLY HIS ALA PHE GLN SEQRES 20 A 425 ALA HIS SER VAL ILE VAL ALA THR PRO MET ASN THR TRP SEQRES 21 A 425 ARG ARG ILE VAL PHE THR PRO ALA LEU PRO GLU ARG ARG SEQRES 22 A 425 ARG SER VAL ILE GLU GLU GLY HIS GLY GLY GLN GLY LEU SEQRES 23 A 425 LYS ILE LEU ILE HIS VAL ARG GLY ALA GLU ALA GLY ILE SEQRES 24 A 425 GLU CYS VAL GLY ASP GLY ILE PHE PRO THR LEU TYR ASP SEQRES 25 A 425 TYR CYS GLU VAL SER GLU SER GLU ARG LEU LEU VAL ALA SEQRES 26 A 425 PHE THR ASP SER GLY SER PHE ASP PRO THR ASP ILE GLY SEQRES 27 A 425 ALA VAL LYS ASP ALA VAL LEU TYR TYR LEU PRO GLU VAL SEQRES 28 A 425 GLU VAL LEU GLY ILE ASP TYR HIS ASP TRP ILE ALA ASP SEQRES 29 A 425 PRO LEU PHE GLU GLY PRO TRP VAL ALA PRO ARG VAL GLY SEQRES 30 A 425 GLN PHE SER ARG VAL HIS LYS GLU LEU GLY GLU PRO ALA SEQRES 31 A 425 GLY ARG ILE HIS PHE VAL GLY SER ASP VAL SER LEU GLU SEQRES 32 A 425 PHE PRO GLY TYR ILE GLU GLY ALA LEU GLU THR ALA GLU SEQRES 33 A 425 CYS ALA VAL ASN ALA ILE LEU HIS SER SEQRES 1 B 425 MET TYR ASP ALA ILE VAL VAL GLY GLY GLY PHE SER GLY SEQRES 2 B 425 LEU LYS ALA ALA ARG ASP LEU THR ASN ALA GLY LYS LYS SEQRES 3 B 425 VAL LEU LEU LEU GLU GLY GLY GLU ARG LEU GLY GLY ARG SEQRES 4 B 425 ALA TYR SER ARG GLU SER ARG ASN VAL PRO GLY LEU ARG SEQRES 5 B 425 VAL GLU ILE GLY GLY ALA TYR LEU HIS ARG LYS HIS HIS SEQRES 6 B 425 PRO ARG LEU ALA ALA GLU LEU ASP ARG TYR GLY ILE PRO SEQRES 7 B 425 THR ALA ALA ALA SER GLU PHE THR SER PHE ARG HIS ARG SEQRES 8 B 425 LEU GLY PRO THR ALA VAL ASP GLN ALA PHE PRO ILE PRO SEQRES 9 B 425 GLY SER GLU ALA VAL ALA VAL GLU ALA ALA THR TYR THR SEQRES 10 B 425 LEU LEU ARG ASP ALA HIS ARG ILE ASP LEU GLU LYS GLY SEQRES 11 B 425 LEU GLU ASN GLN ASP LEU GLU ASP LEU ASP ILE PRO LEU SEQRES 12 B 425 ASN GLU TYR VAL ASP LYS LEU ASP LEU PRO PRO VAL SER SEQRES 13 B 425 ARG GLN PHE LEU LEU ALA TRP ALA TRP ASN MET LEU GLY SEQRES 14 B 425 GLN PRO ALA ASP GLN ALA SER ALA LEU TRP MET LEU GLN SEQRES 15 B 425 LEU VAL ALA ALA HIS HIS TYR SER ILE LEU GLY VAL VAL SEQRES 16 B 425 LEU SER LEU ASP GLU VAL PHE SER ASN GLY SER ALA ASP SEQRES 17 B 425 LEU VAL ASP ALA MET SER GLN GLU ILE PRO GLU ILE ARG SEQRES 18 B 425 LEU GLN THR VAL VAL THR GLY ILE ASP GLN SER GLY ASP SEQRES 19 B 425 VAL VAL ASN VAL THR VAL LYS ASP GLY HIS ALA PHE GLN SEQRES 20 B 425 ALA HIS SER VAL ILE VAL ALA THR PRO MET ASN THR TRP SEQRES 21 B 425 ARG ARG ILE VAL PHE THR PRO ALA LEU PRO GLU ARG ARG SEQRES 22 B 425 ARG SER VAL ILE GLU GLU GLY HIS GLY GLY GLN GLY LEU SEQRES 23 B 425 LYS ILE LEU ILE HIS VAL ARG GLY ALA GLU ALA GLY ILE SEQRES 24 B 425 GLU CYS VAL GLY ASP GLY ILE PHE PRO THR LEU TYR ASP SEQRES 25 B 425 TYR CYS GLU VAL SER GLU SER GLU ARG LEU LEU VAL ALA SEQRES 26 B 425 PHE THR ASP SER GLY SER PHE ASP PRO THR ASP ILE GLY SEQRES 27 B 425 ALA VAL LYS ASP ALA VAL LEU TYR TYR LEU PRO GLU VAL SEQRES 28 B 425 GLU VAL LEU GLY ILE ASP TYR HIS ASP TRP ILE ALA ASP SEQRES 29 B 425 PRO LEU PHE GLU GLY PRO TRP VAL ALA PRO ARG VAL GLY SEQRES 30 B 425 GLN PHE SER ARG VAL HIS LYS GLU LEU GLY GLU PRO ALA SEQRES 31 B 425 GLY ARG ILE HIS PHE VAL GLY SER ASP VAL SER LEU GLU SEQRES 32 B 425 PHE PRO GLY TYR ILE GLU GLY ALA LEU GLU THR ALA GLU SEQRES 33 B 425 CYS ALA VAL ASN ALA ILE LEU HIS SER HET FAD A 434 53 HET GP7 A 435 43 HET FAD B 434 53 HET GP7 B 435 43 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GP7 (1R)-2-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1- HETNAM 2 GP7 [(PENTADECANOYLOXY)METHYL]ETHYL (12E)-HEXADECA-9,12- HETNAM 3 GP7 DIENOATE HETSYN GP7 1-PENTADECANOYL-2-HEXADECANOYL-SN-GLYCERO-3- HETSYN 2 GP7 PHOSPHOETHANOLAMINE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 GP7 2(C36 H68 N O8 P) FORMUL 7 HOH *42(H2 O) HELIX 1 1 GLY A 10 GLY A 24 1 15 HELIX 2 2 HIS A 65 GLY A 76 1 12 HELIX 3 3 GLU A 107 ARG A 124 1 18 HELIX 4 4 LEU A 136 ASP A 140 5 5 HELIX 5 5 PRO A 142 ASP A 151 1 10 HELIX 6 6 PRO A 153 LEU A 168 1 16 HELIX 7 7 SER A 176 HIS A 187 1 12 HELIX 8 8 SER A 206 GLN A 215 1 10 HELIX 9 9 PRO A 256 ILE A 263 5 8 HELIX 10 10 PRO A 270 GLY A 280 1 11 HELIX 11 11 ASP A 336 TYR A 346 1 11 HELIX 12 12 GLY A 377 VAL A 382 1 6 HELIX 13 13 LYS A 384 GLU A 388 5 5 HELIX 14 14 TYR A 407 HIS A 424 1 18 HELIX 15 15 GLY B 10 GLY B 24 1 15 HELIX 16 16 HIS B 65 ASP B 73 1 9 HELIX 17 17 PRO B 104 SER B 106 5 3 HELIX 18 18 GLU B 107 ARG B 124 1 18 HELIX 19 19 PRO B 142 ASP B 151 1 10 HELIX 20 20 PRO B 153 GLY B 169 1 17 HELIX 21 21 SER B 176 HIS B 187 1 12 HELIX 22 22 ILE B 191 LEU B 196 1 6 HELIX 23 23 SER B 206 GLN B 215 1 10 HELIX 24 24 PRO B 256 TRP B 260 5 5 HELIX 25 25 PRO B 270 GLU B 278 1 9 HELIX 26 26 ASP B 336 TYR B 346 1 11 HELIX 27 27 GLY B 377 VAL B 382 1 6 HELIX 28 28 HIS B 383 GLU B 388 5 6 HELIX 29 29 TYR B 407 HIS B 424 1 18 SHEET 1 A 7 ILE A 220 ARG A 221 0 SHEET 2 A 7 VAL A 27 LEU A 30 1 N LEU A 29 O ARG A 221 SHEET 3 A 7 TYR A 2 VAL A 7 1 N VAL A 6 O LEU A 28 SHEET 4 A 7 ALA A 245 VAL A 253 1 O ILE A 252 N VAL A 7 SHEET 5 A 7 VAL A 236 VAL A 240 -1 N VAL A 238 O PHE A 246 SHEET 6 A 7 VAL A 226 ASP A 230 -1 N ASP A 230 O ASN A 237 SHEET 7 A 7 VAL A 264 THR A 266 1 O VAL A 264 N THR A 227 SHEET 1 B 5 ILE A 220 ARG A 221 0 SHEET 2 B 5 VAL A 27 LEU A 30 1 N LEU A 29 O ARG A 221 SHEET 3 B 5 TYR A 2 VAL A 7 1 N VAL A 6 O LEU A 28 SHEET 4 B 5 ALA A 245 VAL A 253 1 O ILE A 252 N VAL A 7 SHEET 5 B 5 ILE A 393 PHE A 395 1 O HIS A 394 N VAL A 251 SHEET 1 C 2 SER A 42 GLU A 44 0 SHEET 2 C 2 ARG A 52 GLU A 54 -1 O VAL A 53 N ARG A 43 SHEET 1 D 2 THR A 79 ALA A 81 0 SHEET 2 D 2 GLU A 200 PHE A 202 -1 O VAL A 201 N ALA A 80 SHEET 1 E 6 SER A 87 PHE A 88 0 SHEET 2 E 6 ILE A 299 VAL A 302 1 O GLU A 300 N SER A 87 SHEET 3 E 6 THR A 309 GLU A 315 -1 O LEU A 310 N CYS A 301 SHEET 4 E 6 GLU A 320 ASP A 328 -1 O LEU A 322 N TYR A 313 SHEET 5 E 6 GLY A 285 ARG A 293 -1 N LEU A 286 O THR A 327 SHEET 6 E 6 GLU A 352 TYR A 358 -1 O LEU A 354 N HIS A 291 SHEET 1 F 7 GLU B 219 ARG B 221 0 SHEET 2 F 7 VAL B 27 LEU B 30 1 N LEU B 29 O GLU B 219 SHEET 3 F 7 TYR B 2 VAL B 7 1 N VAL B 6 O LEU B 28 SHEET 4 F 7 PHE B 246 VAL B 253 1 O ILE B 252 N VAL B 7 SHEET 5 F 7 VAL B 236 VAL B 240 -1 N VAL B 238 O PHE B 246 SHEET 6 F 7 VAL B 226 ASP B 230 -1 N ASP B 230 O ASN B 237 SHEET 7 F 7 VAL B 264 THR B 266 1 O VAL B 264 N ILE B 229 SHEET 1 G 5 GLU B 219 ARG B 221 0 SHEET 2 G 5 VAL B 27 LEU B 30 1 N LEU B 29 O GLU B 219 SHEET 3 G 5 TYR B 2 VAL B 7 1 N VAL B 6 O LEU B 28 SHEET 4 G 5 PHE B 246 VAL B 253 1 O ILE B 252 N VAL B 7 SHEET 5 G 5 ILE B 393 PHE B 395 1 O HIS B 394 N VAL B 251 SHEET 1 H 2 SER B 42 GLU B 44 0 SHEET 2 H 2 ARG B 52 GLU B 54 -1 O VAL B 53 N ARG B 43 SHEET 1 I 2 THR B 79 ALA B 81 0 SHEET 2 I 2 GLU B 200 PHE B 202 -1 O VAL B 201 N ALA B 80 SHEET 1 J 6 SER B 87 PHE B 88 0 SHEET 2 J 6 ILE B 299 VAL B 302 1 O GLU B 300 N SER B 87 SHEET 3 J 6 THR B 309 GLU B 315 -1 O ASP B 312 N ILE B 299 SHEET 4 J 6 GLU B 320 ASP B 328 -1 O VAL B 324 N TYR B 311 SHEET 5 J 6 GLY B 285 ARG B 293 -1 N VAL B 292 O ARG B 321 SHEET 6 J 6 GLU B 352 TYR B 358 -1 O LEU B 354 N HIS B 291 CISPEP 1 THR A 266 PRO A 267 0 -3.01 CISPEP 2 HIS B 244 ALA B 245 0 2.20 CISPEP 3 THR B 266 PRO B 267 0 -2.06 SITE 1 AC1 28 GLY A 8 GLY A 10 PHE A 11 SER A 12 SITE 2 AC1 28 LEU A 30 GLU A 31 GLY A 32 GLY A 37 SITE 3 AC1 28 GLY A 38 ARG A 39 ALA A 40 GLY A 56 SITE 4 AC1 28 GLY A 57 TYR A 59 THR A 224 VAL A 226 SITE 5 AC1 28 ALA A 254 THR A 255 PRO A 256 LEU A 366 SITE 6 AC1 28 PHE A 367 TRP A 371 GLY A 397 SER A 398 SITE 7 AC1 28 GLY A 406 TYR A 407 ILE A 408 ALA A 411 SITE 1 AC2 12 GLN A 99 ALA A 100 THR A 115 PHE A 159 SITE 2 AC2 12 LEU A 160 MET A 180 ILE A 191 LEU A 192 SITE 3 AC2 12 VAL A 195 ILE B 103 GLY B 105 ALA B 108 SITE 1 AC3 32 VAL B 7 GLY B 8 GLY B 10 PHE B 11 SITE 2 AC3 32 SER B 12 LEU B 30 GLU B 31 GLY B 32 SITE 3 AC3 32 GLY B 37 GLY B 38 ARG B 39 GLY B 56 SITE 4 AC3 32 GLY B 57 TYR B 59 THR B 224 VAL B 225 SITE 5 AC3 32 VAL B 226 ALA B 254 THR B 255 PRO B 256 SITE 6 AC3 32 ILE B 263 TRP B 361 LEU B 366 PHE B 367 SITE 7 AC3 32 PRO B 370 GLY B 397 SER B 398 GLY B 406 SITE 8 AC3 32 TYR B 407 ILE B 408 ALA B 411 HOH B 519 SITE 1 AC4 12 ILE A 103 PRO A 104 GLY A 105 ALA B 100 SITE 2 AC4 12 VAL B 111 THR B 115 PHE B 159 LEU B 160 SITE 3 AC4 12 MET B 180 ILE B 191 LEU B 192 VAL B 195 CRYST1 122.957 122.957 199.918 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008133 0.004696 0.000000 0.00000 SCALE2 0.000000 0.009391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005002 0.00000 MASTER 349 0 4 29 44 0 21 6 0 0 0 66 END