HEADER TOXIN/ANTITOXIN 01-OCT-09 3K33 TITLE CRYSTAL STRUCTURE OF THE PHD-DOC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH ON CURING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PREVENT HOST DEATH PROTEIN; COMPND 7 CHAIN: B, C, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: POLYPEPTIDE OF UNKNOWN AMINO ACIDS AND SOURCE; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE P1; SOURCE 4 ORGANISM_TAXID: 10678; SOURCE 5 GENE: DOC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 13 ORGANISM_COMMON: BACTERIOPHAGE P1; SOURCE 14 ORGANISM_TAXID: 10678; SOURCE 15 GENE: PHD; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 23 ORGANISM_COMMON: UNIDENTIFIED; SOURCE 24 ORGANISM_TAXID: 32644; SOURCE 25 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 26 EXPRESSION_SYSTEM_COMMON: UNIDENTIFIED; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 32644 KEYWDS PHD, DOC, FIC, TOXIN, ANTITOXIN, INTRINSIC DISORDER, ALLOSTERY, KEYWDS 2 TRANSCRIPTION REGULATION, RIBOSOME INHIBITOR, TOXIN-ANTITOXIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.LORIS,A.GARCIA-PINO REVDAT 1 18-AUG-10 3K33 0 JRNL AUTH A.GARCIA-PINO,S.BALASUBRAMANIAN,L.WYNS,E.GAZIT,H.DE GREVE, JRNL AUTH 2 R.D.MAGNUSON,D.CHARLIER,N.A.VAN NULAND,R.LORIS JRNL TITL ALLOSTERY AND INTRINSIC DISORDER MEDIATE TRANSCRIPTION JRNL TITL 2 REGULATION BY CONDITIONAL COOPERATIVITY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 142 101 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20603017 JRNL DOI 10.1016/J.CELL.2010.05.039 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 19121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8310 - 4.5893 0.98 2859 152 0.2839 0.2889 REMARK 3 2 4.5893 - 3.6433 0.98 2633 135 0.2262 0.2495 REMARK 3 3 3.6433 - 3.1830 0.97 2592 136 0.2403 0.3100 REMARK 3 4 3.1830 - 2.8920 0.98 2591 128 0.2531 0.2646 REMARK 3 5 2.8920 - 2.6848 0.97 2480 148 0.2544 0.2897 REMARK 3 6 2.6848 - 2.5265 0.97 2537 132 0.2475 0.2661 REMARK 3 7 2.5265 - 2.4000 0.96 2464 134 0.2515 0.3148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 61.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.760 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2478 REMARK 3 ANGLE : 1.266 3349 REMARK 3 CHIRALITY : 0.233 387 REMARK 3 PLANARITY : 0.004 456 REMARK 3 DIHEDRAL : 18.390 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -26.5200 -5.3573 51.5294 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.1073 REMARK 3 T33: 0.1069 T12: 0.0891 REMARK 3 T13: 0.0044 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 4.8999 L22: 1.8857 REMARK 3 L33: 6.5756 L12: 0.9644 REMARK 3 L13: -1.4729 L23: -1.2941 REMARK 3 S TENSOR REMARK 3 S11: -0.5270 S12: -0.1301 S13: -0.5753 REMARK 3 S21: 0.3020 S22: 0.4518 S23: -0.4111 REMARK 3 S31: 0.9549 S32: -0.3480 S33: -0.2609 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K33 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB055484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19121 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.900 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : 0.22400 REMARK 200 FOR SHELL : 10.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DD7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.5, 20 MM REMARK 280 CACL2 AND 35-40% V/V MPD, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 231.54733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.77367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.77367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 231.54733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A HETEROOCTAMER CONSISTING OF A REMARK 300 LINEAR ARRAY WITH ARCHITECTURE PHD-PHD-DOC-PHD-PHD-DOC-PHD-PHD REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 138 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 125 REMARK 465 GLU A 126 REMARK 465 LYS B 68 REMARK 465 GLU B 69 REMARK 465 LEU B 70 REMARK 465 VAL B 71 REMARK 465 ASN B 72 REMARK 465 ARG B 73 REMARK 465 MET D 1 REMARK 465 ARG D 73 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 ILE B 4 CD1 REMARK 470 ALA B 9 CB REMARK 470 ARG B 10 CD NE CZ NH1 NH2 REMARK 470 GLN C 2 CB CG CD OE1 NE2 REMARK 470 ILE C 4 CB CG1 CG2 CD1 REMARK 470 PHE C 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 10 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 13 CD1 CD2 REMARK 470 GLU C 15 CG CD OE1 REMARK 470 ASN C 18 CG OD1 ND2 REMARK 470 GLU C 25 CB CG CD OE1 REMARK 470 VAL C 26 CG1 CG2 REMARK 470 ILE C 28 CG1 CG2 CD1 REMARK 470 ARG C 30 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG C 31 CB CG CD NE CZ NH1 NH2 REMARK 470 ILE C 38 CB CG1 CG2 CD1 REMARK 470 THR C 43 OG1 CG2 REMARK 470 GLU C 45 CB CG CD OE1 REMARK 470 TYR C 47 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 49 CG CD CE NZ REMARK 470 ALA C 50 CB REMARK 470 GLN D 2 CG CD OE1 NE2 REMARK 470 ILE D 4 CG1 CG2 CD1 REMARK 470 ARG D 7 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA D 9 CB REMARK 470 VAL D 16 CG1 CG2 REMARK 470 LEU D 17 CD1 CD2 REMARK 470 GLU D 21 CG CD OE1 REMARK 470 THR D 29 CB OG1 CG2 REMARK 470 ARG D 30 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG D 31 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG D 33 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 34 CB CG CD OE1 REMARK 470 VAL D 39 CG1 CG2 REMARK 470 SER D 40 OG REMARK 470 LYS D 41 CB CG CD CE NZ REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 LYS D 49 CG CD CE NZ REMARK 470 ALA D 50 CB REMARK 470 PHE D 56 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU D 59 CG CD1 CD2 REMARK 470 PHE D 60 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP D 61 CB CG OD1 OD2 REMARK 470 THR D 62 OG1 CG2 REMARK 470 THR D 66 OG1 CG2 REMARK 470 ASN D 67 CG OD1 ND2 REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 GLU D 69 OE1 REMARK 470 VAL D 71 CB CG1 CG2 REMARK 470 ASN D 72 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 12 46.67 -141.08 REMARK 500 ALA C 22 6.63 -68.58 REMARK 500 PHE D 60 30.39 74.29 REMARK 500 ASP D 61 -77.65 -126.32 REMARK 500 THR D 62 -85.80 132.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 81 DISTANCE = 9.04 ANGSTROMS REMARK 525 HOH D 154 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH C 116 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH C 119 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 169 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH A 171 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH B 198 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 211 DISTANCE = 7.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DD7 RELATED DB: PDB REMARK 900 STRUCTURE OF DOCH66Y IN COMPLEX WITH THE C-TERMINUS OF PHD REMARK 900 RELATED ID: 3HS2 RELATED DB: PDB REMARK 900 STRUCTURE OF LIGAND-FREE PHD IN SPACE GROUP C2 REMARK 900 RELATED ID: 3HRY RELATED DB: PDB REMARK 900 STRUCTURE OF LIGAND-FREE PHD IN SPACE GROUP P3121 DBREF 3K33 A 1 126 UNP Q06259 DOC_BPP1 1 126 DBREF 3K33 B 1 73 UNP Q06253 PHD_BPP1 1 73 DBREF 3K33 C 1 73 UNP Q06253 PHD_BPP1 1 73 DBREF 3K33 D 1 73 UNP Q06253 PHD_BPP1 1 73 DBREF 3K33 E 1 11 PDB 3K33 3K33 2 12 SEQRES 1 A 126 MET ARG HIS ILE SER PRO GLU GLU LEU ILE ALA LEU HIS SEQRES 2 A 126 ASP ALA ASN ILE SER ARG TYR GLY GLY LEU PRO GLY MET SEQRES 3 A 126 SER ASP PRO GLY ARG ALA GLU ALA ILE ILE GLY ARG VAL SEQRES 4 A 126 GLN ALA ARG VAL ALA TYR GLU GLU ILE THR ASP LEU PHE SEQRES 5 A 126 GLU VAL SER ALA THR TYR LEU VAL ALA THR ALA ARG GLY SEQRES 6 A 126 HIS ILE PHE ASN ASP ALA ASN LYS ARG THR ALA LEU ASN SEQRES 7 A 126 SER ALA LEU LEU PHE LEU ARG ARG ASN GLY VAL GLN VAL SEQRES 8 A 126 PHE ASP SER PRO GLU LEU ALA ASP LEU THR VAL GLY ALA SEQRES 9 A 126 ALA THR GLY GLU ILE SER VAL SER SER VAL ALA ASP THR SEQRES 10 A 126 LEU ARG ARG LEU TYR GLY SER ALA GLU SEQRES 1 B 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 B 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 B 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 B 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 B 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 B 73 THR ASN LYS GLU LEU VAL ASN ARG SEQRES 1 C 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 C 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 C 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 C 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 C 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 C 73 THR ASN LYS GLU LEU VAL ASN ARG SEQRES 1 D 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 D 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 D 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 D 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 D 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 D 73 THR ASN LYS GLU LEU VAL ASN ARG SEQRES 1 E 12 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK HET ACT C 101 4 HET ACT D 201 4 HETNAM ACT ACETATE ION FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 HOH *187(H2 O) HELIX 1 1 SER A 5 GLY A 21 1 17 HELIX 2 2 GLY A 30 GLU A 47 1 18 HELIX 3 3 ASP A 50 HIS A 66 1 17 HELIX 4 4 ALA A 71 ASN A 87 1 17 HELIX 5 5 GLU A 96 THR A 106 1 11 HELIX 6 6 SER A 110 TYR A 122 1 13 HELIX 7 7 PHE B 6 ASN B 12 1 7 HELIX 8 8 ASN B 12 ALA B 22 1 11 HELIX 9 9 SER B 40 LEU B 59 1 20 HELIX 10 10 ASN C 5 ASN C 12 1 8 HELIX 11 11 ASN C 12 ALA C 22 1 11 HELIX 12 12 LYS C 41 LEU C 63 1 23 HELIX 13 13 LEU C 63 ASN C 72 1 10 HELIX 14 14 PHE D 6 ASN D 12 1 7 HELIX 15 15 ASN D 12 GLU D 21 1 10 HELIX 16 16 LYS D 41 ALA D 57 1 17 HELIX 17 17 UNK E 5 UNK E 12 1 8 SHEET 1 A 3 GLN B 2 ASN B 5 0 SHEET 2 A 3 VAL B 26 THR B 29 1 O GLU B 27 N ILE B 4 SHEET 3 A 3 ALA B 36 ILE B 38 -1 O ILE B 38 N VAL B 26 SHEET 1 B 6 SER C 3 ILE C 4 0 SHEET 2 B 6 VAL C 26 ARG C 30 1 O THR C 29 N ILE C 4 SHEET 3 B 6 ARG C 33 SER C 40 -1 O ILE C 38 N VAL C 26 SHEET 4 B 6 ALA D 36 SER D 40 -1 O VAL D 39 N VAL C 37 SHEET 5 B 6 VAL D 26 THR D 29 -1 N VAL D 26 O ILE D 38 SHEET 6 B 6 SER D 3 ASN D 5 1 N ILE D 4 O THR D 29 CISPEP 1 THR B 66 ASN B 67 0 -10.77 CISPEP 2 LEU D 63 ASP D 64 0 0.47 CISPEP 3 GLU D 69 LEU D 70 0 8.40 SITE 1 AC1 3 ALA C 51 GLU C 55 HOH C 108 SITE 1 AC2 1 ASP A 93 CRYST1 48.295 48.295 347.321 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020706 0.011955 0.000000 0.00000 SCALE2 0.000000 0.023909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002879 0.00000 MASTER 374 0 2 17 9 0 2 6 0 0 0 29 END