HEADER ISOMERASE 30-SEP-09 3K2V TITLE STRUCTURE OF THE CBS PAIR OF A PUTATIVE D-ARABINOSE 5-PHOSPHATE TITLE 2 ISOMERASE FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE D-ARABINOSE 5-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TARGETED DOMAIN 186-331; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 272620; SOURCE 4 STRAIN: MGH 78578; SOURCE 5 GENE: KPN78578_35760, KPN_03607, YRBH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MODIFIED BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS KPSF-LIKE PROTEIN, CBS DOMAIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,L.VOLKART,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 01-NOV-17 3K2V 1 REMARK REVDAT 3 13-JUL-11 3K2V 1 VERSN REVDAT 2 26-MAY-10 3K2V 1 REMARK REVDAT 1 22-DEC-09 3K2V 0 JRNL AUTH M.E.CUFF,L.VOLKART,J.BEARDEN,A.JOACHIMIAK JRNL TITL STRUCTURE OF THE CBS PAIR OF A PUTATIVE D-ARABINOSE JRNL TITL 2 5-PHOSPHATE ISOMERASE FROM KLEBSIELLA PNEUMONIAE SUBSP. JRNL TITL 3 PNEUMONIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1604 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2177 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.702 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2225 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1474 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3041 ; 1.532 ; 2.027 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3566 ; 0.941 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 5.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;30.161 ;22.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;13.565 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2450 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 427 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1354 ; 0.791 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 564 ; 0.198 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2206 ; 1.557 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 871 ; 2.669 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 824 ; 4.194 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7055 19.2899 91.3916 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.0670 REMARK 3 T33: 0.0311 T12: 0.0089 REMARK 3 T13: 0.0004 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.9838 L22: 0.3091 REMARK 3 L33: 3.7692 L12: 0.2274 REMARK 3 L13: -0.6476 L23: 0.3525 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: -0.1133 S13: -0.0024 REMARK 3 S21: 0.0394 S22: -0.1282 S23: -0.0178 REMARK 3 S31: 0.1484 S32: -0.0418 S33: 0.1922 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4264 7.2301 74.9709 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.0554 REMARK 3 T33: 0.1729 T12: 0.0247 REMARK 3 T13: -0.0233 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.7844 L22: 1.7271 REMARK 3 L33: 0.8076 L12: 1.6181 REMARK 3 L13: -0.0381 L23: -0.2548 REMARK 3 S TENSOR REMARK 3 S11: 0.1082 S12: -0.0678 S13: 0.3018 REMARK 3 S21: -0.0026 S22: -0.0976 S23: 0.3043 REMARK 3 S31: 0.0064 S32: -0.0684 S33: -0.0106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3K2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931, 0.97945 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 0.2M AMMONIUM REMARK 280 SULFATE, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.07550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.48845 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 71.61667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.07550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.48845 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 71.61667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.07550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.48845 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.61667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.07550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.48845 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 71.61667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.07550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.48845 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.61667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.07550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.48845 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.61667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.97691 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 143.23333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.97691 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 143.23333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.97691 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 143.23333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.97691 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 143.23333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.97691 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 143.23333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.97691 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 143.23333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: LIKELY THE AB DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 183 REMARK 465 ASN A 184 REMARK 465 ALA A 185 REMARK 465 GLU A 186 REMARK 465 ALA A 187 REMARK 465 ARG A 188 REMARK 465 GLY A 189 REMARK 465 PHE A 190 REMARK 465 THR A 191 REMARK 465 ALA A 192 REMARK 465 GLU A 193 REMARK 465 ASP A 194 REMARK 465 PHE A 195 REMARK 465 ALA A 196 REMARK 465 LEU A 197 REMARK 465 SER A 198 REMARK 465 HIS A 199 REMARK 465 PRO A 200 REMARK 465 GLY A 201 REMARK 465 SER B 183 REMARK 465 ASN B 184 REMARK 465 ALA B 185 REMARK 465 GLU B 186 REMARK 465 ALA B 187 REMARK 465 ARG B 188 REMARK 465 GLY B 189 REMARK 465 PHE B 190 REMARK 465 THR B 191 REMARK 465 ALA B 192 REMARK 465 GLU B 193 REMARK 465 ASP B 194 REMARK 465 PHE B 195 REMARK 465 ALA B 196 REMARK 465 LEU B 197 REMARK 465 SER B 198 REMARK 465 HIS B 199 REMARK 465 PRO B 200 REMARK 465 GLY B 201 REMARK 465 GLY B 202 REMARK 465 ALA B 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH A 392 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 274 CB - CG - SE ANGL. DEV. = -21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 269 43.94 -76.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMK A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMK B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC63101.2 RELATED DB: TARGETDB DBREF 3K2V A 186 331 UNP A6TEL6 A6TEL6_KLEP7 186 331 DBREF 3K2V B 186 331 UNP A6TEL6 A6TEL6_KLEP7 186 331 SEQADV 3K2V SER A 183 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V ASN A 184 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V ALA A 185 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V SER B 183 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V ASN B 184 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V ALA B 185 UNP A6TEL6 EXPRESSION TAG SEQRES 1 A 149 SER ASN ALA GLU ALA ARG GLY PHE THR ALA GLU ASP PHE SEQRES 2 A 149 ALA LEU SER HIS PRO GLY GLY ALA LEU GLY ARG LYS LEU SEQRES 3 A 149 LEU LEU ARG VAL ASN ASP ILE MSE HIS THR GLY ASP GLU SEQRES 4 A 149 ILE PRO HIS VAL GLY LEU GLN ALA THR LEU ARG ASP ALA SEQRES 5 A 149 LEU LEU GLU ILE THR ARG LYS ASN LEU GLY MSE THR ALA SEQRES 6 A 149 ILE CYS ASP ASP ASP MSE ASN ILE ILE GLY ILE PHE THR SEQRES 7 A 149 ASP GLY ASP LEU ARG ARG VAL PHE ASP THR GLY VAL ASP SEQRES 8 A 149 MSE ARG ASP ALA SER ILE ALA ASP VAL MSE THR ARG GLY SEQRES 9 A 149 GLY ILE ARG ILE ARG PRO GLY THR LEU ALA VAL ASP ALA SEQRES 10 A 149 LEU ASN LEU MSE GLN SER ARG HIS ILE THR CYS VAL LEU SEQRES 11 A 149 VAL ALA ASP GLY ASP HIS LEU LEU GLY VAL VAL HIS MSE SEQRES 12 A 149 HIS ASP LEU LEU ARG ALA SEQRES 1 B 149 SER ASN ALA GLU ALA ARG GLY PHE THR ALA GLU ASP PHE SEQRES 2 B 149 ALA LEU SER HIS PRO GLY GLY ALA LEU GLY ARG LYS LEU SEQRES 3 B 149 LEU LEU ARG VAL ASN ASP ILE MSE HIS THR GLY ASP GLU SEQRES 4 B 149 ILE PRO HIS VAL GLY LEU GLN ALA THR LEU ARG ASP ALA SEQRES 5 B 149 LEU LEU GLU ILE THR ARG LYS ASN LEU GLY MSE THR ALA SEQRES 6 B 149 ILE CYS ASP ASP ASP MSE ASN ILE ILE GLY ILE PHE THR SEQRES 7 B 149 ASP GLY ASP LEU ARG ARG VAL PHE ASP THR GLY VAL ASP SEQRES 8 B 149 MSE ARG ASP ALA SER ILE ALA ASP VAL MSE THR ARG GLY SEQRES 9 B 149 GLY ILE ARG ILE ARG PRO GLY THR LEU ALA VAL ASP ALA SEQRES 10 B 149 LEU ASN LEU MSE GLN SER ARG HIS ILE THR CYS VAL LEU SEQRES 11 B 149 VAL ALA ASP GLY ASP HIS LEU LEU GLY VAL VAL HIS MSE SEQRES 12 B 149 HIS ASP LEU LEU ARG ALA MODRES 3K2V MSE A 216 MET SELENOMETHIONINE MODRES 3K2V MSE A 245 MET SELENOMETHIONINE MODRES 3K2V MSE A 253 MET SELENOMETHIONINE MODRES 3K2V MSE A 274 MET SELENOMETHIONINE MODRES 3K2V MSE A 283 MET SELENOMETHIONINE MODRES 3K2V MSE A 303 MET SELENOMETHIONINE MODRES 3K2V MSE A 325 MET SELENOMETHIONINE MODRES 3K2V MSE B 216 MET SELENOMETHIONINE MODRES 3K2V MSE B 245 MET SELENOMETHIONINE MODRES 3K2V MSE B 253 MET SELENOMETHIONINE MODRES 3K2V MSE B 274 MET SELENOMETHIONINE MODRES 3K2V MSE B 283 MET SELENOMETHIONINE MODRES 3K2V MSE B 303 MET SELENOMETHIONINE MODRES 3K2V MSE B 325 MET SELENOMETHIONINE HET MSE A 216 8 HET MSE A 245 13 HET MSE A 253 8 HET MSE A 274 13 HET MSE A 283 8 HET MSE A 303 8 HET MSE A 325 13 HET MSE B 216 8 HET MSE B 245 13 HET MSE B 253 8 HET MSE B 274 8 HET MSE B 283 8 HET MSE B 303 13 HET MSE B 325 16 HET CMK A 1 36 HET SO4 A 332 5 HET GOL A 333 6 HET GOL A 334 6 HET CMK B 1 36 HET GOL B 332 6 HETNAM MSE SELENOMETHIONINE HETNAM CMK CYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D-GULO-OCT-2- HETNAM 2 CMK ULO-PYRANOSONIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN CMK CMP-2-KETO-3-DEOXY-OCTULOSONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 CMK 2(C17 H26 N3 O15 P) FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL 3(C3 H8 O3) FORMUL 9 HOH *289(H2 O) HELIX 1 1 GLY A 202 LEU A 208 1 7 HELIX 2 2 LEU A 209 LEU A 210 5 2 HELIX 3 3 ARG A 211 ILE A 215 5 5 HELIX 4 4 THR A 218 ILE A 222 5 5 HELIX 5 5 THR A 230 ASN A 242 1 13 HELIX 6 6 ASP A 261 ASP A 269 1 9 HELIX 7 7 SER A 278 MSE A 283 1 6 HELIX 8 8 LEU A 295 HIS A 307 1 13 HELIX 9 9 MSE A 325 LEU A 329 1 5 HELIX 10 10 ALA B 203 LEU B 209 1 7 HELIX 11 11 LEU B 210 ILE B 215 5 6 HELIX 12 12 THR B 218 ILE B 222 5 5 HELIX 13 13 THR B 230 ASN B 242 1 13 HELIX 14 14 ASP B 261 ASP B 269 1 9 HELIX 15 15 SER B 278 MSE B 283 1 6 HELIX 16 16 LEU B 295 HIS B 307 1 13 HELIX 17 17 MSE B 325 LEU B 329 1 5 SHEET 1 A 4 HIS A 224 VAL A 225 0 SHEET 2 A 4 MSE A 245 CYS A 249 1 O CYS A 249 N VAL A 225 SHEET 3 A 4 ILE A 255 THR A 260 -1 O ILE A 256 N ILE A 248 SHEET 4 A 4 THR A 284 ARG A 285 -1 O THR A 284 N ILE A 258 SHEET 1 B 3 ARG A 289 ILE A 290 0 SHEET 2 B 3 CYS A 310 ASP A 315 1 O ALA A 314 N ILE A 290 SHEET 3 B 3 HIS A 318 HIS A 324 -1 O GLY A 321 N VAL A 313 SHEET 1 C 4 HIS B 224 GLY B 226 0 SHEET 2 C 4 MSE B 245 CYS B 249 1 O CYS B 249 N VAL B 225 SHEET 3 C 4 ILE B 255 THR B 260 -1 O ILE B 256 N ILE B 248 SHEET 4 C 4 THR B 284 ARG B 285 -1 O THR B 284 N ILE B 258 SHEET 1 D 3 ARG B 289 ILE B 290 0 SHEET 2 D 3 CYS B 310 ASP B 315 1 O ALA B 314 N ILE B 290 SHEET 3 D 3 HIS B 318 HIS B 324 -1 O GLY B 321 N VAL B 313 LINK C ILE A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N HIS A 217 1555 1555 1.33 LINK C GLY A 244 N MSE A 245 1555 1555 1.32 LINK C MSE A 245 N THR A 246 1555 1555 1.32 LINK C ASP A 252 N MSE A 253 1555 1555 1.34 LINK C MSE A 253 N ASN A 254 1555 1555 1.33 LINK C ASP A 273 N MSE A 274 1555 1555 1.32 LINK C MSE A 274 N ARG A 275 1555 1555 1.33 LINK C VAL A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N THR A 284 1555 1555 1.33 LINK C LEU A 302 N MSE A 303 1555 1555 1.33 LINK C MSE A 303 N GLN A 304 1555 1555 1.33 LINK C HIS A 324 N MSE A 325 1555 1555 1.33 LINK C MSE A 325 N HIS A 326 1555 1555 1.34 LINK C ILE B 215 N MSE B 216 1555 1555 1.33 LINK C MSE B 216 N HIS B 217 1555 1555 1.32 LINK C GLY B 244 N MSE B 245 1555 1555 1.33 LINK C MSE B 245 N THR B 246 1555 1555 1.32 LINK C ASP B 252 N MSE B 253 1555 1555 1.33 LINK C MSE B 253 N ASN B 254 1555 1555 1.33 LINK C ASP B 273 N MSE B 274 1555 1555 1.34 LINK C MSE B 274 N ARG B 275 1555 1555 1.33 LINK C VAL B 282 N MSE B 283 1555 1555 1.33 LINK C MSE B 283 N THR B 284 1555 1555 1.32 LINK C LEU B 302 N MSE B 303 1555 1555 1.33 LINK C MSE B 303 N GLN B 304 1555 1555 1.33 LINK C HIS B 324 N AMSE B 325 1555 1555 1.33 LINK C HIS B 324 N BMSE B 325 1555 1555 1.32 LINK C AMSE B 325 N HIS B 326 1555 1555 1.33 LINK C BMSE B 325 N HIS B 326 1555 1555 1.34 SITE 1 AC1 27 HOH A 60 HOH A 61 HOH A 63 HOH A 90 SITE 2 AC1 27 HOH A 129 HOH A 161 ILE A 258 THR A 260 SITE 3 AC1 27 GLY A 262 ASP A 263 ARG A 265 ARG A 266 SITE 4 AC1 27 THR A 284 ILE A 288 HIS A 307 ILE A 308 SITE 5 AC1 27 CYS A 310 VAL A 311 HOH A 360 HOH A 361 SITE 6 AC1 27 HOH A 373 ASN B 242 LEU B 243 GLY B 244 SITE 7 AC1 27 ASP B 261 HIS B 324 GOL B 332 SITE 1 AC2 27 HOH A 131 ASN A 242 GLY A 244 ASP A 261 SITE 2 AC2 27 HIS A 324 HIS A 326 GOL A 333 HOH B 3 SITE 3 AC2 27 HOH B 114 ILE B 258 THR B 260 GLY B 262 SITE 4 AC2 27 ASP B 263 ARG B 265 ARG B 266 THR B 284 SITE 5 AC2 27 GLY B 287 ILE B 288 HIS B 307 ILE B 308 SITE 6 AC2 27 CYS B 310 VAL B 311 HOH B 346 HOH B 366 SITE 7 AC2 27 HOH B 374 HOH B 375 HOH B 381 SITE 1 AC3 4 HOH A 103 ARG A 291 GLY A 316 ASP A 317 SITE 1 AC4 6 CMK A 1 HIS A 307 HOH B 141 HOH B 179 SITE 2 AC4 6 HIS B 217 ASN B 242 SITE 1 AC5 5 ASN A 242 LEU A 243 ASP A 327 ARG A 330 SITE 2 AC5 5 CMK B 1 SITE 1 AC6 4 ASN A 301 HOH A 382 HOH A 386 HOH A 391 CRYST1 102.151 102.151 214.850 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009789 0.005652 0.000000 0.00000 SCALE2 0.000000 0.011304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004654 0.00000 MASTER 454 0 20 17 14 0 20 6 0 0 0 24 END