HEADER HYDROLASE/IMMUNE SYSTEM 30-SEP-09 3K2U TITLE CRYSTAL STRUCTURE OF HGFA IN COMPLEX WITH THE ALLOSTERIC INHIBITORY TITLE 2 ANTIBODY FAB40 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR ACTIVATOR LONG CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HGF ACTIVATOR, HGFA; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEPATOCYTE GROWTH FACTOR ACTIVATOR SHORT CHAIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: HGF ACTIVATOR, HGFA; COMPND 11 EC: 3.4.21.-; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ANTIBODY, FAB FRAGMENT, HEAVY CHAIN; COMPND 15 CHAIN: H; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: ANTIBODY, FAB FRAGMENT, LIGHT CHAIN; COMPND 19 CHAIN: L; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: BACULOGOLD; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: BACULOGOLD; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: 33D3; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 MOL_ID: 4; SOURCE 28 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 29 ORGANISM_COMMON: HUMAN; SOURCE 30 ORGANISM_TAXID: 9606; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 33 EXPRESSION_SYSTEM_STRAIN: 33D3; SOURCE 34 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SERINE PROTEASE, ALLOSTERIC INHIBITOR, ANTIBODY, EGF-LIKE DOMAIN, KEYWDS 2 GLYCOPROTEIN, FAB COMPLEX, HYDROLASE, DISULFIDE BOND, KRINGLE, KEYWDS 3 PROTEASE, SECRETED, ZYMOGEN, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.GANESAN,C.EIGENBROT,S.SHIA REVDAT 4 29-JUL-20 3K2U 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 28-MAR-12 3K2U 1 JRNL REVDAT 2 13-JUL-11 3K2U 1 VERSN REVDAT 1 15-DEC-09 3K2U 0 JRNL AUTH R.GANESAN,C.EIGENBROT,Y.WU,W.C.LIANG,S.SHIA,M.T.LIPARI, JRNL AUTH 2 D.KIRCHHOFER JRNL TITL UNRAVELING THE ALLOSTERIC MECHANISM OF SERINE PROTEASE JRNL TITL 2 INHIBITION BY AN ANTIBODY. JRNL REF STRUCTURE V. 17 1614 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 20004165 JRNL DOI 10.1016/J.STR.2009.09.014 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 894977.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 26714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2653 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3706 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 392 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 27.76000 REMARK 3 B22 (A**2) : -20.69000 REMARK 3 B33 (A**2) : -7.08000 REMARK 3 B12 (A**2) : 12.16000 REMARK 3 B13 (A**2) : 13.89000 REMARK 3 B23 (A**2) : 8.10000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.60 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.150 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 50.97 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3K2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19800 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2R0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 10,000, 100 MM HEPES PH 7.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, L, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 146 REMARK 465 ASN A 147 REMARK 465 GLY A 216 REMARK 465 ASP A 217 REMARK 465 GLY A 220 REMARK 465 ARG A 221 REMARK 465 PRO A 244 REMARK 465 PRO A 245 REMARK 465 ARG A 246 REMARK 465 ARG A 247 REMARK 465 LEU A 248 REMARK 465 VAL A 249 REMARK 465 ALA A 250 REMARK 465 PRO A 251 REMARK 465 SER A 252 REMARK 465 ALA A 253 REMARK 465 ALA A 254 REMARK 465 ALA A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 VAL B 372 REMARK 465 GLN B 373 REMARK 465 LEU B 374 REMARK 465 SER B 375 REMARK 465 PRO B 376 REMARK 465 ASP B 377 REMARK 465 LEU B 378 REMARK 465 LEU B 379 REMARK 465 ALA B 380 REMARK 465 THR B 381 REMARK 465 LEU B 382 REMARK 465 PRO B 383 REMARK 465 GLU B 384 REMARK 465 PRO B 385 REMARK 465 ALA B 386 REMARK 465 SER B 387 REMARK 465 PRO B 388 REMARK 465 GLY B 389 REMARK 465 ARG B 390 REMARK 465 GLN B 391 REMARK 465 HIS B 397 REMARK 465 LYS B 398 REMARK 465 LYS B 399 REMARK 465 ARG B 400 REMARK 465 THR B 401 REMARK 465 PHE B 402 REMARK 465 LEU B 403 REMARK 465 ARG B 404 REMARK 465 PRO B 405 REMARK 465 ARG B 406 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 LYS L 126 REMARK 465 SER L 127 REMARK 465 GLY L 128 REMARK 465 SER L 168 REMARK 465 LYS L 169 REMARK 465 ASP L 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 NAG C 1 O HOH A 312 1.71 REMARK 500 O6 NAG C 1 O HOH A 277 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 48 144.17 -176.20 REMARK 500 SER A 54 -155.25 -142.76 REMARK 500 LYS A 87 142.49 179.81 REMARK 500 PRO A 99A -14.69 -47.97 REMARK 500 ARG A 111C -166.31 -167.68 REMARK 500 CYS A 111D -87.94 -118.25 REMARK 500 VAL A 171 -65.97 -129.65 REMARK 500 TYR A 172 -9.48 -140.73 REMARK 500 ALA A 183 107.90 -161.00 REMARK 500 ASP A 186 -168.03 -122.29 REMARK 500 LYS A 188A -104.76 -99.68 REMARK 500 SER H 62 -7.19 -56.57 REMARK 500 ALA H 88 173.83 171.02 REMARK 500 TRP H 96 -64.32 -179.64 REMARK 500 ASP H 144 94.50 56.10 REMARK 500 PHE H 146 133.00 -175.17 REMARK 500 THR H 160 -39.00 -135.29 REMARK 500 SER H 172 1.72 -63.90 REMARK 500 PRO H 213 85.87 -67.26 REMARK 500 ASP L 17 -175.57 -57.87 REMARK 500 SER L 30 -113.95 51.48 REMARK 500 ALA L 51 -45.60 76.16 REMARK 500 SER L 56 131.06 -38.08 REMARK 500 ASP L 82 9.94 -62.87 REMARK 500 ALA L 84 -178.15 176.42 REMARK 500 ASN L 138 86.00 43.86 REMARK 500 ASN L 158 35.04 -141.71 REMARK 500 TYR L 173 -168.79 -110.44 REMARK 500 SER L 174 131.49 -173.86 REMARK 500 GLU L 187 30.44 -93.41 REMARK 500 LYS L 190 -82.12 -99.25 REMARK 500 SER L 203 134.51 -176.28 REMARK 500 PRO L 204 98.31 -47.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R0L RELATED DB: PDB REMARK 900 RELATED ID: 2R0K RELATED DB: PDB REMARK 900 RELATED ID: 1YBW RELATED DB: PDB REMARK 900 RELATED ID: 1YC0 RELATED DB: PDB DBREF 3K2U A 16 252 UNP Q04756 HGFA_HUMAN 408 655 DBREF 3K2U B 372 406 UNP Q04756 HGFA_HUMAN 373 407 DBREF 3K2U H 1 220 PDB 3K2U 3K2U 1 220 DBREF 3K2U L 1 214 PDB 3K2U 3K2U 1 214 SEQADV 3K2U ALA A 253 UNP Q04756 EXPRESSION TAG SEQADV 3K2U ALA A 254 UNP Q04756 EXPRESSION TAG SEQADV 3K2U ALA A 255 UNP Q04756 EXPRESSION TAG SEQADV 3K2U HIS A 256 UNP Q04756 EXPRESSION TAG SEQADV 3K2U HIS A 257 UNP Q04756 EXPRESSION TAG SEQADV 3K2U HIS A 258 UNP Q04756 EXPRESSION TAG SEQADV 3K2U HIS A 259 UNP Q04756 EXPRESSION TAG SEQADV 3K2U HIS A 260 UNP Q04756 EXPRESSION TAG SEQADV 3K2U HIS A 261 UNP Q04756 EXPRESSION TAG SEQRES 1 A 257 ILE ILE GLY GLY SER SER SER LEU PRO GLY SER HIS PRO SEQRES 2 A 257 TRP LEU ALA ALA ILE TYR ILE GLY ASP SER PHE CYS ALA SEQRES 3 A 257 GLY SER LEU VAL HIS THR CYS TRP VAL VAL SER ALA ALA SEQRES 4 A 257 HIS CYS PHE SER HIS SER PRO PRO ARG ASP SER VAL SER SEQRES 5 A 257 VAL VAL LEU GLY GLN HIS PHE PHE ASN ARG THR THR ASP SEQRES 6 A 257 VAL THR GLN THR PHE GLY ILE GLU LYS TYR ILE PRO TYR SEQRES 7 A 257 THR LEU TYR SER VAL PHE ASN PRO SER ASP HIS ASP LEU SEQRES 8 A 257 VAL LEU ILE ARG LEU LYS LYS LYS GLY ASP ARG CYS ALA SEQRES 9 A 257 THR ARG SER GLN PHE VAL GLN PRO ILE CYS LEU PRO GLU SEQRES 10 A 257 PRO GLY SER THR PHE PRO ALA GLY HIS LYS CYS GLN ILE SEQRES 11 A 257 ALA GLY TRP GLY HIS LEU ASP GLU ASN VAL SER GLY TYR SEQRES 12 A 257 SER SER SER LEU ARG GLU ALA LEU VAL PRO LEU VAL ALA SEQRES 13 A 257 ASP HIS LYS CYS SER SER PRO GLU VAL TYR GLY ALA ASP SEQRES 14 A 257 ILE SER PRO ASN MET LEU CYS ALA GLY TYR PHE ASP CYS SEQRES 15 A 257 LYS SER ASP ALA CYS GLN GLY ASP SER GLY GLY PRO LEU SEQRES 16 A 257 ALA CYS GLU LYS ASN GLY VAL ALA TYR LEU TYR GLY ILE SEQRES 17 A 257 ILE SER TRP GLY ASP GLY CYS GLY ARG LEU HIS LYS PRO SEQRES 18 A 257 GLY VAL TYR THR ARG VAL ALA ASN TYR VAL ASP TRP ILE SEQRES 19 A 257 ASN ASP ARG ILE ARG PRO PRO ARG ARG LEU VAL ALA PRO SEQRES 20 A 257 SER ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 35 VAL GLN LEU SER PRO ASP LEU LEU ALA THR LEU PRO GLU SEQRES 2 B 35 PRO ALA SER PRO GLY ARG GLN ALA CYS GLY ARG ARG HIS SEQRES 3 B 35 LYS LYS ARG THR PHE LEU ARG PRO ARG SEQRES 1 H 225 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 225 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 225 PHE THR ILE ASN GLY THR TYR ILE HIS TRP VAL ARG GLN SEQRES 4 H 225 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY GLY ILE TYR SEQRES 5 H 225 PRO ALA GLY GLY ALA THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 225 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 H 225 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 225 ALA VAL TYR TYR CYS ALA LYS TRP TRP ALA TRP PRO ALA SEQRES 9 H 225 PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 225 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 225 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 225 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 225 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 225 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 225 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 225 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 225 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 18 H 225 ASP LYS THR HIS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN ASP VAL SER THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 L 214 PHE LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 214 ASN ARG ALA PRO ALA THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS MODRES 3K2U ASN A 74 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 5 NAG 2(C8 H15 N O6) FORMUL 6 HOH *168(H2 O) HELIX 1 1 ALA A 55 SER A 60 5 6 HELIX 2 2 PRO A 60D ASP A 62 5 3 HELIX 3 3 ALA A 164 SER A 169 1 6 HELIX 4 4 TYR A 172 ILE A 176 5 5 HELIX 5 5 TYR A 234 ILE A 242 1 9 HELIX 6 6 THR H 28 THR H 32 5 5 HELIX 7 7 ASP H 61 LYS H 64 5 4 HELIX 8 8 ARG H 83 THR H 87 5 5 HELIX 9 9 SER H 187 LEU H 189 5 3 HELIX 10 10 LYS H 201 ASN H 204 5 4 HELIX 11 11 GLN L 79 PHE L 83 5 5 HELIX 12 12 SER L 121 LEU L 125 5 5 HELIX 13 13 SER L 182 GLU L 187 1 6 SHEET 1 A 3 SER A 20 SER A 21 0 SHEET 2 A 3 ARG A 156 PRO A 161 -1 O GLU A 157 N SER A 20 SHEET 3 A 3 LYS A 135 GLY A 140 -1 N CYS A 136 O VAL A 160 SHEET 1 B 7 GLN A 81 PHE A 83 0 SHEET 2 B 7 VAL A 64 LEU A 68 -1 N VAL A 66 O PHE A 83 SHEET 3 B 7 LEU A 30 ILE A 35 -1 N ALA A 32 O VAL A 67 SHEET 4 B 7 SER A 40 HIS A 48 -1 O GLY A 44 N ALA A 31 SHEET 5 B 7 TRP A 51 SER A 54 -1 O TRP A 51 N HIS A 48 SHEET 6 B 7 VAL A 104 LEU A 108 -1 O ILE A 106 N VAL A 52 SHEET 7 B 7 ILE A 85 PRO A 90 -1 N ILE A 89 O LEU A 105 SHEET 1 C 4 MET A 180 ALA A 183 0 SHEET 2 C 4 GLY A 226 ARG A 230 -1 O TYR A 228 N LEU A 181 SHEET 3 C 4 VAL A 206 TRP A 215 -1 N TRP A 215 O VAL A 227 SHEET 4 C 4 PRO A 198 LYS A 203 -1 N LYS A 203 O VAL A 206 SHEET 1 D 4 GLN H 3 SER H 7 0 SHEET 2 D 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 D 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 D 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 E 6 LEU H 11 VAL H 12 0 SHEET 2 E 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 E 6 ALA H 88 TRP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 E 6 TYR H 33 GLN H 39 -1 N HIS H 35 O ALA H 93 SHEET 5 E 6 LEU H 45 TYR H 52 -1 O VAL H 48 N TRP H 36 SHEET 6 E 6 ALA H 56 TYR H 59 -1 O ALA H 56 N TYR H 52 SHEET 1 F 4 LEU H 11 VAL H 12 0 SHEET 2 F 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 F 4 ALA H 88 TRP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 F 4 TYR H 102 TRP H 103 -1 O TYR H 102 N LYS H 94 SHEET 1 G 4 SER H 120 LEU H 124 0 SHEET 2 G 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 G 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 G 4 HIS H 164 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 H 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 H 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 I 3 THR H 151 TRP H 154 0 SHEET 2 I 3 ILE H 195 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 I 3 THR H 205 LYS H 210 -1 O THR H 205 N HIS H 200 SHEET 1 J 4 MET L 4 SER L 7 0 SHEET 2 J 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 J 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 J 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 K 6 SER L 10 SER L 14 0 SHEET 2 K 6 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 K 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 K 6 VAL L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 K 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 K 6 PHE L 53 LEU L 54 -1 O PHE L 53 N TYR L 49 SHEET 1 L 4 SER L 10 SER L 14 0 SHEET 2 L 4 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 L 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 L 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 M 4 SER L 114 PHE L 118 0 SHEET 2 M 4 ALA L 130 ASN L 137 -1 O LEU L 135 N PHE L 116 SHEET 3 M 4 SER L 174 LEU L 181 -1 O LEU L 179 N VAL L 132 SHEET 4 M 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 N 3 LYS L 145 VAL L 150 0 SHEET 2 N 3 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 3 N 3 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.04 SSBOND 2 CYS A 50 CYS A 111D 1555 1555 2.04 SSBOND 3 CYS A 122 CYS B 393 1555 1555 2.03 SSBOND 4 CYS A 136 CYS A 201 1555 1555 2.03 SSBOND 5 CYS A 168 CYS A 182 1555 1555 2.02 SSBOND 6 CYS A 191 CYS A 219 1555 1555 2.04 SSBOND 7 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 8 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 9 CYS H 216 CYS L 214 1555 1555 2.04 SSBOND 10 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 11 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN A 74 C1 NAG C 1 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 CISPEP 1 PHE H 146 PRO H 147 0 0.05 CISPEP 2 GLU H 148 PRO H 149 0 -2.34 CISPEP 3 SER L 7 PRO L 8 0 0.19 CISPEP 4 ALA L 94 PRO L 95 0 -0.12 CISPEP 5 TYR L 140 PRO L 141 0 0.37 CRYST1 38.944 48.933 96.034 98.10 95.01 103.89 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025678 0.006350 0.003361 0.00000 SCALE2 0.000000 0.021052 0.003574 0.00000 SCALE3 0.000000 0.000000 0.010602 0.00000 MASTER 351 0 2 13 60 0 0 6 0 0 0 58 END