HEADER PROTEIN BINDING 24-SEP-09 3K05 TITLE THE CRYSTAL STRUCTURE OF MDC1 BRCT T2067D IN COMPLEX WITH A MINIMAL TITLE 2 RECOGNITION TETRAPEPTIDE WITH AN AMIDATED C-TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIATOR OF DNA DAMAGE CHECKPOINT PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BRCT DOMAIN (UNP RESIDUES 1892 TO 2089); COMPND 5 SYNONYM: NUCLEAR FACTOR WITH BRCT DOMAINS 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PHOSPHO PEPTIDE; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0170, MDC1, NFBD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKM596; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. THE PEPTIDE SOURCE 15 IS CHEMICALLY SYNTHESIZED. KEYWDS BRCT DOMAIN, PROTEIN-PEPTIDE COMPLEX, PHOSPHO PROTEIN BINDING, H2AX, KEYWDS 2 DNA DAMAGE RESPONSE, CELL CYCLE, DNA DAMAGE, DNA REPAIR, NUCLEUS, KEYWDS 3 PHOSPHOPROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.J.CAMPBELL,R.A.EDWARDS,J.N.GLOVER REVDAT 4 13-OCT-21 3K05 1 REMARK DBREF SEQADV LINK REVDAT 3 01-NOV-17 3K05 1 REMARK REVDAT 2 28-JUL-10 3K05 1 AUTHOR REVDAT 1 02-MAR-10 3K05 0 JRNL AUTH S.J.CAMPBELL,R.A.EDWARDS,J.N.GLOVER JRNL TITL COMPARISON OF THE STRUCTURES AND PEPTIDE BINDING JRNL TITL 2 SPECIFICITIES OF THE BRCT DOMAINS OF MDC1 AND BRCA1 JRNL REF STRUCTURE V. 18 167 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20159462 JRNL DOI 10.1016/J.STR.2009.12.008 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 92958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 336 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.444 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3305 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4510 ; 1.306 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 5.382 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;31.455 ;22.794 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 545 ;10.848 ;15.055 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2544 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2074 ; 1.062 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3382 ; 1.727 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 2.413 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1123 ; 3.728 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3305 ; 1.277 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 468 ; 3.825 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3220 ; 2.831 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1892 A 2085 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3517 -6.3348 -18.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.0005 T22: 0.0206 REMARK 3 T33: 0.0032 T12: -0.0025 REMARK 3 T13: 0.0006 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4983 L22: 1.6615 REMARK 3 L33: 0.8715 L12: -0.2072 REMARK 3 L13: 0.3101 L23: -0.5118 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.0413 S13: 0.0145 REMARK 3 S21: -0.0001 S22: -0.0262 S23: -0.0150 REMARK 3 S31: -0.0042 S32: 0.0297 S33: 0.0149 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1892 B 2085 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0702 -23.8535 -42.3369 REMARK 3 T TENSOR REMARK 3 T11: 0.0044 T22: 0.0179 REMARK 3 T33: 0.0086 T12: 0.0077 REMARK 3 T13: 0.0025 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4891 L22: 0.9018 REMARK 3 L33: 0.3429 L12: 0.4676 REMARK 3 L13: -0.0256 L23: -0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.0259 S13: -0.0395 REMARK 3 S21: 0.0131 S22: 0.0091 S23: -0.0242 REMARK 3 S31: 0.0066 S32: 0.0232 S33: -0.0187 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 139 C 142 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0228 -11.4171 -29.6613 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0560 REMARK 3 T33: 0.0530 T12: 0.0010 REMARK 3 T13: 0.0029 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.5115 L22: 2.5233 REMARK 3 L33: 3.6100 L12: -0.3908 REMARK 3 L13: -0.2460 L23: -0.3359 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0132 S13: -0.1668 REMARK 3 S21: -0.1086 S22: -0.0189 S23: 0.0111 REMARK 3 S31: 0.1471 S32: -0.1269 S33: 0.0358 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 139 D 142 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9551 -19.9790 -33.3908 REMARK 3 T TENSOR REMARK 3 T11: 0.0272 T22: 0.0109 REMARK 3 T33: 0.0247 T12: -0.0031 REMARK 3 T13: 0.0174 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 4.9532 L22: 9.9675 REMARK 3 L33: 4.2703 L12: 1.3756 REMARK 3 L13: -1.8815 L23: -3.9939 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: -0.0950 S13: -0.0923 REMARK 3 S21: 0.2948 S22: 0.1285 S23: 0.3134 REMARK 3 S31: 0.0329 S32: -0.0172 S33: -0.1322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115872 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.82100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.70400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.70400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.82100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER BOUND TO A PHOSPHO REMARK 300 TETRAPEPTIDE. THERE ARE 2 BIOLOGICAL UNITS IN THE ASYMMETRIC UNIT REMARK 300 (CHAINS A & C AND CHAINS B & D REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1890 REMARK 465 LEU A 2084 REMARK 465 GLU A 2085 REMARK 465 MET A 2086 REMARK 465 SER A 2087 REMARK 465 SER A 2088 REMARK 465 THR A 2089 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2090 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2091 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K0H RELATED DB: PDB REMARK 900 RELATED ID: 3K0K RELATED DB: PDB DBREF 3K05 A 1891 2089 UNP Q14676 MDC1_HUMAN 1891 2089 DBREF 3K05 B 1891 2089 UNP Q14676 MDC1_HUMAN 1891 2089 DBREF 3K05 C 139 143 PDB 3K05 3K05 139 143 DBREF 3K05 D 139 143 PDB 3K05 3K05 139 143 SEQADV 3K05 GLY A 1890 UNP Q14676 EXPRESSION TAG SEQADV 3K05 ASP A 2067 UNP Q14676 THR 2067 ENGINEERED MUTATION SEQADV 3K05 GLY B 1890 UNP Q14676 EXPRESSION TAG SEQADV 3K05 ASP B 2067 UNP Q14676 THR 2067 ENGINEERED MUTATION SEQRES 1 A 200 GLY THR ALA PRO LYS VAL LEU PHE THR GLY VAL VAL ASP SEQRES 2 A 200 ALA ARG GLY GLU ARG ALA VAL LEU ALA LEU GLY GLY SER SEQRES 3 A 200 LEU ALA GLY SER ALA ALA GLU ALA SER HIS LEU VAL THR SEQRES 4 A 200 ASP ARG ILE ARG ARG THR VAL LYS PHE LEU CYS ALA LEU SEQRES 5 A 200 GLY ARG GLY ILE PRO ILE LEU SER LEU ASP TRP LEU HIS SEQRES 6 A 200 GLN SER ARG LYS ALA GLY PHE PHE LEU PRO PRO ASP GLU SEQRES 7 A 200 TYR VAL VAL THR ASP PRO GLU GLN GLU LYS ASN PHE GLY SEQRES 8 A 200 PHE SER LEU GLN ASP ALA LEU SER ARG ALA ARG GLU ARG SEQRES 9 A 200 ARG LEU LEU GLU GLY TYR GLU ILE TYR VAL THR PRO GLY SEQRES 10 A 200 VAL GLN PRO PRO PRO PRO GLN MET GLY GLU ILE ILE SER SEQRES 11 A 200 CYS CYS GLY GLY THR TYR LEU PRO SER MET PRO ARG SER SEQRES 12 A 200 TYR LYS PRO GLN ARG VAL VAL ILE THR CYS PRO GLN ASP SEQRES 13 A 200 PHE PRO HIS CYS SER ILE PRO LEU ARG VAL GLY LEU PRO SEQRES 14 A 200 LEU LEU SER PRO GLU PHE LEU LEU ASP GLY VAL LEU LYS SEQRES 15 A 200 GLN GLU ALA LYS PRO GLU ALA PHE VAL LEU SER PRO LEU SEQRES 16 A 200 GLU MET SER SER THR SEQRES 1 B 200 GLY THR ALA PRO LYS VAL LEU PHE THR GLY VAL VAL ASP SEQRES 2 B 200 ALA ARG GLY GLU ARG ALA VAL LEU ALA LEU GLY GLY SER SEQRES 3 B 200 LEU ALA GLY SER ALA ALA GLU ALA SER HIS LEU VAL THR SEQRES 4 B 200 ASP ARG ILE ARG ARG THR VAL LYS PHE LEU CYS ALA LEU SEQRES 5 B 200 GLY ARG GLY ILE PRO ILE LEU SER LEU ASP TRP LEU HIS SEQRES 6 B 200 GLN SER ARG LYS ALA GLY PHE PHE LEU PRO PRO ASP GLU SEQRES 7 B 200 TYR VAL VAL THR ASP PRO GLU GLN GLU LYS ASN PHE GLY SEQRES 8 B 200 PHE SER LEU GLN ASP ALA LEU SER ARG ALA ARG GLU ARG SEQRES 9 B 200 ARG LEU LEU GLU GLY TYR GLU ILE TYR VAL THR PRO GLY SEQRES 10 B 200 VAL GLN PRO PRO PRO PRO GLN MET GLY GLU ILE ILE SER SEQRES 11 B 200 CYS CYS GLY GLY THR TYR LEU PRO SER MET PRO ARG SER SEQRES 12 B 200 TYR LYS PRO GLN ARG VAL VAL ILE THR CYS PRO GLN ASP SEQRES 13 B 200 PHE PRO HIS CYS SER ILE PRO LEU ARG VAL GLY LEU PRO SEQRES 14 B 200 LEU LEU SER PRO GLU PHE LEU LEU ASP GLY VAL LEU LYS SEQRES 15 B 200 GLN GLU ALA LYS PRO GLU ALA PHE VAL LEU SER PRO LEU SEQRES 16 B 200 GLU MET SER SER THR SEQRES 1 C 5 SEP GLN GLU TYR NH2 SEQRES 1 D 5 SEP GLN GLU TYR NH2 MODRES 3K05 SEP C 139 SER PHOSPHOSERINE MODRES 3K05 SEP D 139 SER PHOSPHOSERINE HET SEP C 139 10 HET NH2 C 143 1 HET SEP D 139 10 HET NH2 D 143 1 HET GOL A 1 6 HET GOL B 1 6 HET GOL B2090 6 HET GOL B2091 6 HETNAM SEP PHOSPHOSERINE HETNAM NH2 AMINO GROUP HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 3 NH2 2(H2 N) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *468(H2 O) HELIX 1 1 ASP A 1902 LEU A 1912 1 11 HELIX 2 2 SER A 1919 ALA A 1923 5 5 HELIX 3 3 THR A 1934 GLY A 1944 1 11 HELIX 4 4 SER A 1949 GLY A 1960 1 12 HELIX 5 5 PRO A 1965 VAL A 1969 5 5 HELIX 6 6 ASP A 1972 GLY A 1980 1 9 HELIX 7 7 SER A 1982 ARG A 1993 1 12 HELIX 8 8 PRO A 2010 CYS A 2021 1 12 HELIX 9 9 CYS A 2042 HIS A 2048 5 7 HELIX 10 10 CYS A 2049 GLY A 2056 1 8 HELIX 11 11 PRO A 2062 GLN A 2072 1 11 HELIX 12 12 LYS A 2075 VAL A 2080 5 6 HELIX 13 13 ASP B 1902 LEU B 1912 1 11 HELIX 14 14 SER B 1919 ALA B 1923 5 5 HELIX 15 15 THR B 1934 GLY B 1944 1 11 HELIX 16 16 LEU B 1950 GLY B 1960 1 11 HELIX 17 17 PRO B 1965 VAL B 1969 5 5 HELIX 18 18 ASP B 1972 GLY B 1980 1 9 HELIX 19 19 SER B 1982 ARG B 1993 1 12 HELIX 20 20 PRO B 2010 CYS B 2021 1 12 HELIX 21 21 CYS B 2042 HIS B 2048 5 7 HELIX 22 22 CYS B 2049 GLY B 2056 1 8 HELIX 23 23 PRO B 2062 GLN B 2072 1 11 HELIX 24 24 LYS B 2075 PHE B 2079 5 5 SHEET 1 A 4 SER A1915 LEU A1916 0 SHEET 2 A 4 LYS A1894 PHE A1897 1 N VAL A1895 O SER A1915 SHEET 3 A 4 HIS A1925 VAL A1927 1 O HIS A1925 N LEU A1896 SHEET 4 A 4 ILE A1947 LEU A1948 1 O LEU A1948 N LEU A1926 SHEET 1 B 4 THR A2024 LEU A2026 0 SHEET 2 B 4 GLU A2000 VAL A2003 1 N ILE A2001 O LEU A2026 SHEET 3 B 4 ARG A2037 ILE A2040 1 O ILE A2040 N TYR A2002 SHEET 4 B 4 LEU A2059 LEU A2060 1 O LEU A2060 N VAL A2039 SHEET 1 C 4 SER B1915 LEU B1916 0 SHEET 2 C 4 LYS B1894 PHE B1897 1 N VAL B1895 O SER B1915 SHEET 3 C 4 HIS B1925 THR B1928 1 O VAL B1927 N LEU B1896 SHEET 4 C 4 ILE B1947 SER B1949 1 O LEU B1948 N LEU B1926 SHEET 1 D 4 THR B2024 LEU B2026 0 SHEET 2 D 4 GLU B2000 VAL B2003 1 N ILE B2001 O LEU B2026 SHEET 3 D 4 ARG B2037 ILE B2040 1 O ILE B2040 N TYR B2002 SHEET 4 D 4 LEU B2059 LEU B2060 1 O LEU B2060 N VAL B2039 LINK C SEP C 139 N GLN C 140 1555 1555 1.33 LINK C TYR C 142 N NH2 C 143 1555 1555 1.32 LINK C SEP D 139 N GLN D 140 1555 1555 1.33 LINK C TYR D 142 N NH2 D 143 1555 1555 1.33 CISPEP 1 GLN A 2008 PRO A 2009 0 -4.30 CISPEP 2 GLN B 2008 PRO B 2009 0 -3.29 SITE 1 AC1 8 GLN A2008 GLU A2063 HOH B 69 HOH B 186 SITE 2 AC1 8 VAL B1901 ALA B1903 TYR C 142 NH2 C 143 SITE 1 AC2 8 HOH B 78 HOH B 113 HOH B 300 HOH B 389 SITE 2 AC2 8 ARG B1943 ARG B1994 SER B2019 GLY B2022 SITE 1 AC3 10 HOH A 71 ARG A1943 ARG A1994 SER A2019 SITE 2 AC3 10 CYS A2020 GLY A2022 HOH B 37 HOH B 289 SITE 3 AC3 10 PRO B2047 SER B2050 SITE 1 AC4 10 HOH B 82 HOH B 84 HOH B 235 HOH B 409 SITE 2 AC4 10 PHE B1897 GLY B1899 VAL B1900 LYS B1936 SITE 3 AC4 10 GLN C 140 SEP D 139 CRYST1 55.642 74.580 103.408 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009670 0.00000 MASTER 361 0 8 24 16 0 10 6 0 0 0 34 END