HEADER PROTEIN TRANSPORT 15-SEP-09 3JUX TITLE STRUCTURE OF THE TRANSLOCATION ATPASE SECA FROM THERMOTOGA TITLE 2 MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSLOCASE SUBUNIT SECA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: DSM 3109; SOURCE 5 GENE: SECA, TM_1578; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROTEIN TRANSLOCATION, ATPASE, CONFORMATIONAL CHANGE, KEYWDS 2 PEPTIDE BINDING, ATP-BINDING, CELL INNER MEMBRANE, CELL KEYWDS 3 MEMBRANE, CYTOPLASM, MEMBRANE, NUCLEOTIDE-BINDING, PROTEIN KEYWDS 4 TRANSPORT, TRANSLOCATION, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.ZIMMER REVDAT 2 12-JAN-10 3JUX 1 JRNL REVDAT 1 20-OCT-09 3JUX 0 JRNL AUTH J.ZIMMER,T.A.RAPOPORT JRNL TITL CONFORMATIONAL FLEXIBILITY AND PEPTIDE INTERACTION JRNL TITL 2 OF THE TRANSLOCATION ATPASE SECA. JRNL REF J.MOL.BIOL. V. 394 606 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19850053 JRNL DOI 10.1016/J.JMB.2009.10.024 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1560 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.5270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6589 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JUX COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-09. REMARK 100 THE RCSB ID CODE IS RCSB055190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.29 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATER REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATER REMARK 200 WITH HORIZONTAL FOCUSING REMARK 200 SAGITTAL BEND SECOND MONO REMARK 200 CRYSTAL WITH 4:1 MAGNIFICATION REMARK 200 RATIO AND VERTICALLY FOCUSING REMARK 200 MIRROR. REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17570 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17300 REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79000 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TF5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 60% MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.26650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.70150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.26650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.70150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 LEU A 3 REMARK 465 HIS A 817 REMARK 465 HIS A 818 REMARK 465 HIS A 819 REMARK 465 HIS A 820 REMARK 465 HIS A 821 REMARK 465 HIS A 822 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 370 C - N - CD ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 150.26 -44.98 REMARK 500 THR A 123 -155.49 -116.27 REMARK 500 ASN A 193 93.91 -57.02 REMARK 500 PHE A 200 36.56 -96.46 REMARK 500 TYR A 238 -4.04 -59.71 REMARK 500 PHE A 247 -72.99 -100.77 REMARK 500 ILE A 259 -60.26 -120.41 REMARK 500 ASP A 292 -0.99 75.34 REMARK 500 GLU A 299 63.39 -63.92 REMARK 500 ARG A 302 100.64 -164.05 REMARK 500 LYS A 346 -133.63 51.24 REMARK 500 VAL A 361 -123.74 54.50 REMARK 500 GLU A 363 8.38 117.76 REMARK 500 PHE A 364 41.06 85.68 REMARK 500 ASN A 505 -69.97 -142.14 REMARK 500 ALA A 506 71.11 -160.82 REMARK 500 ARG A 573 -64.71 -150.01 REMARK 500 LEU A 586 -8.93 -57.54 REMARK 500 ILE A 608 177.91 -50.04 REMARK 500 TRP A 693 56.56 -145.00 REMARK 500 GLN A 716 53.49 -142.81 REMARK 500 TYR A 781 140.49 -38.92 REMARK 500 GLN A 783 115.35 -166.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 318 23.1 L L OUTSIDE RANGE REMARK 500 VAL A 361 22.8 L L OUTSIDE RANGE REMARK 500 PRO A 370 45.2 L L OUTSIDE RANGE REMARK 500 ALA A 506 22.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 872 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 823 O REMARK 620 2 HOH A 824 O 61.5 REMARK 620 N 1 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 872 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 873 DBREF 3JUX A 1 816 UNP Q9X1R4 SECA_THEMA 1 816 SEQADV 3JUX HIS A 817 UNP Q9X1R4 EXPRESSION TAG SEQADV 3JUX HIS A 818 UNP Q9X1R4 EXPRESSION TAG SEQADV 3JUX HIS A 819 UNP Q9X1R4 EXPRESSION TAG SEQADV 3JUX HIS A 820 UNP Q9X1R4 EXPRESSION TAG SEQADV 3JUX HIS A 821 UNP Q9X1R4 EXPRESSION TAG SEQADV 3JUX HIS A 822 UNP Q9X1R4 EXPRESSION TAG SEQRES 1 A 822 MET ILE LEU PHE ASP LYS ASN LYS ARG ILE LEU LYS LYS SEQRES 2 A 822 TYR ALA LYS MET VAL SER LYS ILE ASN GLN ILE GLU SER SEQRES 3 A 822 ASP LEU ARG SER LYS LYS ASN SER GLU LEU ILE ARG LEU SEQRES 4 A 822 SER MET VAL LEU LYS GLU LYS VAL ASN SER PHE GLU ASP SEQRES 5 A 822 ALA ASP GLU HIS LEU PHE GLU ALA PHE ALA LEU VAL ARG SEQRES 6 A 822 GLU ALA ALA ARG ARG THR LEU GLY MET ARG PRO PHE ASP SEQRES 7 A 822 VAL GLN VAL MET GLY GLY ILE ALA LEU HIS GLU GLY LYS SEQRES 8 A 822 VAL ALA GLU MET LYS THR GLY GLU GLY LYS THR LEU ALA SEQRES 9 A 822 ALA THR MET PRO ILE TYR LEU ASN ALA LEU ILE GLY LYS SEQRES 10 A 822 GLY VAL HIS LEU VAL THR VAL ASN ASP TYR LEU ALA ARG SEQRES 11 A 822 ARG ASP ALA LEU TRP MET GLY PRO VAL TYR LEU PHE LEU SEQRES 12 A 822 GLY LEU ARG VAL GLY VAL ILE ASN SER LEU GLY LYS SER SEQRES 13 A 822 TYR GLU VAL VAL TRP LYS ASN PRO ASP LEU ALA ARG LYS SEQRES 14 A 822 ALA ILE GLU GLU ASN TRP SER VAL TRP PRO ASP GLY PHE SEQRES 15 A 822 ASN GLY GLU VAL LEU LYS GLU GLU SER MET ASN LYS GLU SEQRES 16 A 822 ALA VAL GLU ALA PHE GLN VAL GLU LEU LYS GLU ILE THR SEQRES 17 A 822 ARG LYS GLU ALA TYR LEU CYS ASP VAL THR TYR GLY THR SEQRES 18 A 822 ASN ASN GLU PHE GLY PHE ASP TYR LEU ARG ASP ASN LEU SEQRES 19 A 822 VAL LEU ASP TYR ASN ASP LYS VAL GLN ARG GLY HIS PHE SEQRES 20 A 822 TYR ALA ILE VAL ASP GLU ALA ASP SER VAL LEU ILE ASP SEQRES 21 A 822 GLU ALA ARG THR PRO LEU ILE ILE SER GLY PRO SER LYS SEQRES 22 A 822 GLU SER PRO SER VAL TYR ARG ARG PHE ALA GLN ILE ALA SEQRES 23 A 822 LYS LYS PHE VAL LYS ASP LYS ASP PHE THR VAL ASP GLU SEQRES 24 A 822 LYS ALA ARG THR ILE ILE LEU THR GLU GLU GLY VAL ALA SEQRES 25 A 822 LYS ALA GLU LYS ILE ILE GLY VAL GLU ASN LEU TYR ASP SEQRES 26 A 822 PRO GLY ASN VAL SER LEU LEU TYR HIS LEU ILE ASN ALA SEQRES 27 A 822 LEU LYS ALA LEU HIS LEU PHE LYS LYS ASP VAL ASP TYR SEQRES 28 A 822 VAL VAL MET ASN GLY GLU VAL ILE ILE VAL ASP GLU PHE SEQRES 29 A 822 THR GLY ARG LEU LEU PRO GLY ARG ARG TYR SER GLY GLY SEQRES 30 A 822 LEU HIS GLN ALA ILE GLU ALA LYS GLU GLY VAL PRO ILE SEQRES 31 A 822 LYS GLU GLU SER ILE THR TYR ALA THR ILE THR PHE GLN SEQRES 32 A 822 ASN TYR PHE ARG MET TYR GLU LYS LEU ALA GLY MET THR SEQRES 33 A 822 GLY THR ALA LYS THR GLU GLU SER GLU PHE VAL GLN VAL SEQRES 34 A 822 TYR GLY MET GLU VAL VAL VAL ILE PRO THR HIS LYS PRO SEQRES 35 A 822 MET ILE ARG LYS ASP HIS ASP ASP LEU VAL PHE ARG THR SEQRES 36 A 822 GLN LYS GLU LYS TYR GLU LYS ILE VAL GLU GLU ILE GLU SEQRES 37 A 822 LYS ARG TYR LYS LYS GLY GLN PRO VAL LEU VAL GLY THR SEQRES 38 A 822 THR SER ILE GLU LYS SER GLU LEU LEU SER SER MET LEU SEQRES 39 A 822 LYS LYS LYS GLY ILE PRO HIS GLN VAL LEU ASN ALA LYS SEQRES 40 A 822 TYR HIS GLU LYS GLU ALA GLU ILE VAL ALA LYS ALA GLY SEQRES 41 A 822 GLN LYS GLY MET VAL THR ILE ALA THR ASN MET ALA GLY SEQRES 42 A 822 ARG GLY THR ASP ILE LYS LEU GLY PRO GLY VAL ALA GLU SEQRES 43 A 822 LEU GLY GLY LEU CYS ILE ILE GLY THR GLU ARG HIS GLU SEQRES 44 A 822 SER ARG ARG ILE ASP ASN GLN LEU ARG GLY ARG ALA GLY SEQRES 45 A 822 ARG GLN GLY ASP PRO GLY GLU SER ILE PHE PHE LEU SER SEQRES 46 A 822 LEU GLU ASP ASP LEU LEU ARG ILE PHE GLY SER GLU GLN SEQRES 47 A 822 ILE GLY LYS VAL MET ASN ILE LEU LYS ILE GLU GLU GLY SEQRES 48 A 822 GLN PRO ILE GLN HIS PRO MET LEU SER LYS LEU ILE GLU SEQRES 49 A 822 ASN ILE GLN LYS LYS VAL GLU GLY ILE ASN PHE SER ILE SEQRES 50 A 822 ARG LYS THR LEU MET GLU MET ASP ASP VAL LEU ASP LYS SEQRES 51 A 822 GLN ARG ARG ALA VAL TYR SER LEU ARG ASP GLN ILE LEU SEQRES 52 A 822 LEU GLU LYS ASP TYR ASP GLU TYR LEU LYS ASP ILE PHE SEQRES 53 A 822 GLU ASP VAL VAL SER THR ARG VAL GLU GLU PHE CYS SER SEQRES 54 A 822 GLY LYS ASN TRP ASP ILE GLU SER LEU LYS ASN SER LEU SEQRES 55 A 822 SER PHE PHE PRO ALA GLY LEU PHE ASP LEU ASP GLU LYS SEQRES 56 A 822 GLN PHE SER SER SER GLU GLU LEU HIS ASP TYR LEU PHE SEQRES 57 A 822 ASN ARG LEU TRP GLU GLU TYR GLN ARG LYS LYS GLN GLU SEQRES 58 A 822 ILE GLY GLU ASP TYR ARG LYS VAL ILE ARG PHE LEU MET SEQRES 59 A 822 LEU ARG ILE ILE ASP ASP HIS TRP ARG ARG TYR LEU GLU SEQRES 60 A 822 GLU VAL GLU HIS VAL LYS GLU ALA VAL GLN LEU ARG SER SEQRES 61 A 822 TYR GLY GLN LYS ASP PRO ILE VAL GLU PHE LYS LYS GLU SEQRES 62 A 822 THR TYR TYR MET PHE ASP GLU MET MET ARG ARG ILE ASN SEQRES 63 A 822 ASP THR ILE ALA ASN TYR VAL LEU ARG VAL HIS HIS HIS SEQRES 64 A 822 HIS HIS HIS HET MG A 872 1 HET ADP A 873 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *2(H2 O) HELIX 1 1 ASP A 5 ARG A 29 1 25 HELIX 2 2 LYS A 32 VAL A 47 1 16 HELIX 3 3 SER A 49 LEU A 72 1 24 HELIX 4 4 PHE A 77 GLU A 89 1 13 HELIX 5 5 GLY A 100 ALA A 105 1 6 HELIX 6 6 ALA A 105 LEU A 114 1 10 HELIX 7 7 ASN A 125 LEU A 143 1 19 HELIX 8 8 ASN A 163 GLU A 173 1 11 HELIX 9 9 LYS A 188 MET A 192 5 5 HELIX 10 10 LYS A 194 PHE A 200 1 7 HELIX 11 11 THR A 208 CYS A 215 1 8 HELIX 12 12 ASN A 222 ASN A 233 1 12 HELIX 13 13 GLU A 253 ILE A 259 1 7 HELIX 14 14 ASP A 260 THR A 264 5 5 HELIX 15 15 SER A 275 ALA A 286 1 12 HELIX 16 16 THR A 307 GLY A 319 1 13 HELIX 17 17 ASP A 325 GLY A 327 5 3 HELIX 18 18 ASN A 328 PHE A 345 1 18 HELIX 19 19 GLY A 377 GLY A 387 1 11 HELIX 20 20 THR A 401 ARG A 407 1 7 HELIX 21 21 GLU A 422 TYR A 430 1 9 HELIX 22 22 THR A 455 GLY A 474 1 20 HELIX 23 23 SER A 483 LYS A 496 1 14 HELIX 24 24 LYS A 507 GLN A 521 1 15 HELIX 25 25 SER A 560 GLY A 569 1 10 HELIX 26 26 GLY A 595 LEU A 606 1 12 HELIX 27 27 HIS A 616 GLU A 665 1 50 HELIX 28 28 TYR A 668 CYS A 688 1 21 HELIX 29 29 ILE A 695 LEU A 702 1 8 HELIX 30 30 SER A 719 GLY A 743 1 25 HELIX 31 31 ASP A 745 SER A 780 1 36 HELIX 32 32 ILE A 787 ARG A 815 1 29 SHEET 1 A 9 VAL A 202 GLU A 206 0 SHEET 2 A 9 LYS A 155 TRP A 161 -1 N VAL A 160 O GLU A 203 SHEET 3 A 9 VAL A 147 ASN A 151 -1 N ASN A 151 O LYS A 155 SHEET 4 A 9 VAL A 217 THR A 221 1 O TYR A 219 N ILE A 150 SHEET 5 A 9 VAL A 119 THR A 123 1 N VAL A 119 O THR A 218 SHEET 6 A 9 TYR A 248 ASP A 252 1 O ASP A 252 N VAL A 122 SHEET 7 A 9 LYS A 411 THR A 416 1 O ALA A 413 N VAL A 251 SHEET 8 A 9 VAL A 92 GLU A 94 1 N ALA A 93 O GLY A 414 SHEET 9 A 9 VAL A 434 VAL A 436 1 O VAL A 435 N VAL A 92 SHEET 1 B 2 LEU A 266 SER A 269 0 SHEET 2 B 2 THR A 396 ILE A 400 -1 O TYR A 397 N ILE A 268 SHEET 1 C 2 PHE A 295 VAL A 297 0 SHEET 2 C 2 ILE A 304 LEU A 306 -1 O ILE A 305 N THR A 296 SHEET 1 D 2 TYR A 351 MET A 354 0 SHEET 2 D 2 GLU A 357 ILE A 360 -1 O ILE A 359 N VAL A 352 SHEET 1 E 3 LYS A 446 HIS A 448 0 SHEET 2 E 3 GLU A 579 SER A 585 1 O SER A 580 N LYS A 446 SHEET 3 E 3 ASP A 450 PHE A 453 1 N LEU A 451 O LEU A 584 SHEET 1 F 6 LYS A 446 ASP A 447 0 SHEET 2 F 6 GLU A 579 SER A 585 1 O SER A 580 N LYS A 446 SHEET 3 F 6 CYS A 551 GLY A 554 1 N ILE A 552 O GLU A 579 SHEET 4 F 6 VAL A 477 THR A 481 1 N GLY A 480 O ILE A 553 SHEET 5 F 6 VAL A 525 THR A 529 1 O ALA A 528 N VAL A 479 SHEET 6 F 6 GLN A 502 LEU A 504 1 N GLN A 502 O ILE A 527 LINK MG MG A 872 O HOH A 823 1555 1555 2.27 LINK MG MG A 872 O HOH A 824 1555 1555 2.40 CISPEP 1 SER A 152 LEU A 153 0 5.16 CISPEP 2 LYS A 300 ALA A 301 0 14.53 CISPEP 3 ALA A 301 ARG A 302 0 -0.80 CISPEP 4 ILE A 318 GLY A 319 0 -4.18 CISPEP 5 VAL A 349 ASP A 350 0 1.80 CISPEP 6 VAL A 361 ASP A 362 0 -11.32 CISPEP 7 THR A 365 GLY A 366 0 -0.65 CISPEP 8 PRO A 370 GLY A 371 0 -1.29 CISPEP 9 VAL A 388 PRO A 389 0 -20.29 CISPEP 10 ILE A 608 GLU A 609 0 0.00 CISPEP 11 ALA A 707 GLY A 708 0 -8.21 CISPEP 12 TYR A 781 GLY A 782 0 -1.57 CISPEP 13 GLY A 782 GLN A 783 0 -9.65 SITE 1 AC1 4 ASP A 252 HOH A 823 HOH A 824 ADP A 873 SITE 1 AC2 16 PHE A 77 GLN A 80 LYS A 96 GLY A 98 SITE 2 AC2 16 GLU A 99 GLY A 100 LYS A 101 THR A 102 SITE 3 AC2 16 LEU A 103 TRP A 135 GLY A 535 ASP A 537 SITE 4 AC2 16 LYS A 539 HOH A 823 HOH A 824 MG A 872 CRYST1 64.533 119.403 120.820 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008277 0.00000 MASTER 357 0 2 32 24 0 5 6 0 0 0 64 END