HEADER VIRUS 29-APR-16 3JD7 TITLE THE NOVEL ASYMMETRIC ENTRY INTERMEDIATE OF A PICORNAVIRUS CAPTURED TITLE 2 WITH NANODISCS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: 1; COMPND 4 FRAGMENT: UNP RESIDUES 571-851; COMPND 5 SYNONYM: P1D, VIRION PROTEIN 1; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAPSID PROTEIN VP2; COMPND 8 CHAIN: 2; COMPND 9 FRAGMENT: UNP RESIDUES 70-332; COMPND 10 SYNONYM: P1B, VIRION PROTEIN 2; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CAPSID PROTEIN VP3; COMPND 13 CHAIN: 3; COMPND 14 FRAGMENT: UNP RESIDUES 333-570; COMPND 15 SYNONYM: P1C, VIRION PROTEIN 3; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: CAPSID PROTEIN VP4; COMPND 18 CHAIN: 4; COMPND 19 FRAGMENT: UNP RESIDUES 2-69; COMPND 20 SYNONYM: P1A, VIRION PROTEIN 4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 3 ORGANISM_TAXID: 12072; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 6 ORGANISM_TAXID: 12072; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 9 ORGANISM_TAXID: 12072; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 12 ORGANISM_TAXID: 12072 KEYWDS PICORNAVIRUS, ENTRY INTERMEDIATE, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR H.LEE,K.L.SHINGLER,L.J.ORGANTINI,R.E.ASHLEY,A.M.MAKHOV,J.F.CONWAY, AUTHOR 2 S.HAFENSTEIN REVDAT 1 14-SEP-16 3JD7 0 JRNL AUTH H.LEE,K.L.SHINGLER,L.J.ORGANTINI,R.E.ASHLEY,A.M.MAKHOV, JRNL AUTH 2 J.F.CONWAY,S.HAFENSTEIN JRNL TITL THE NOVEL ASYMMETRIC ENTRY INTERMEDIATE OF A PICORNAVIRUS JRNL TITL 2 CAPTURED WITH NANODISCS. JRNL REF SCI ADV V. 2 01929 2016 JRNL REFN ESSN 2375-2548 JRNL PMID 27574701 JRNL DOI 10.1126/SCIADV.1501929 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1COV REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 193.000 REMARK 3 REMARK 3 FITTING PROCEDURE : REAL-SPACE REFINEMENT REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.370 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 1.370 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 57203 REMARK 3 CTF CORRECTION METHOD : EACH PARTICLE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (SINGLE PARTICLE--APPLIED SYMMETRY: I) REMARK 4 REMARK 4 3JD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-16. REMARK 100 THE RCSB ID CODE IS RCSB160553. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : ICOSAHEDRAL REMARK 245 NAME OF SAMPLE : LOCALLY-STIMULATED A-PARTICLE REMARK 245 OF CVB3 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : PLUNGED INTO LIQUID ETHANE REMARK 245 (GATAN CRYOPLUNGE 3) REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 21-NOV-14 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 9685 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1362.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 5875.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2, 3, 4 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 6 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 6 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 8 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 8 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 9 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 10 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 11 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 11 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 12 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 12 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 13 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 14 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 14 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 15 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 16 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 16 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 17 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 17 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 17 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 18 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 18 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 18 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 19 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 19 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 20 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 20 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 21 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 21 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 22 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 23 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 24 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 25 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 25 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 27 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 28 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 29 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 30 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 31 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 31 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 31 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 32 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 33 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 33 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 34 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 34 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 35 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 35 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 35 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 36 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 36 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 36 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 37 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 37 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 37 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 38 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 38 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 38 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 39 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 40 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 40 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 41 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 41 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 41 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 42 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 42 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 42 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 43 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 44 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 45 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 45 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 45 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 47 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 47 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 49 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 49 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 50 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 50 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 50 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 51 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 51 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 52 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 52 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 52 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 53 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 53 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 54 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 55 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 55 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 60 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY 1 1 REMARK 465 PRO 1 2 REMARK 465 VAL 1 3 REMARK 465 GLU 1 4 REMARK 465 ASP 1 5 REMARK 465 ALA 1 6 REMARK 465 ILE 1 7 REMARK 465 THR 1 8 REMARK 465 ALA 1 9 REMARK 465 ALA 1 10 REMARK 465 ILE 1 11 REMARK 465 SER 2 1 REMARK 465 PRO 2 2 REMARK 465 THR 2 3 REMARK 465 VAL 2 4 REMARK 465 GLU 2 5 REMARK 465 GLU 2 6 REMARK 465 CYS 2 7 REMARK 465 HIS 4 13 REMARK 465 GLU 4 14 REMARK 465 THR 4 15 REMARK 465 GLY 4 16 REMARK 465 LEU 4 17 REMARK 465 ASN 4 18 REMARK 465 ALA 4 19 REMARK 465 SER 4 20 REMARK 465 GLY 4 21 REMARK 465 ASN 4 22 REMARK 465 SER 4 23 REMARK 465 ILE 4 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR 1 163 -60.15 -131.97 REMARK 500 ILE 1 246 75.39 55.35 REMARK 500 LEU 1 252 -71.88 -104.77 REMARK 500 GLU 1 256 -62.44 -129.98 REMARK 500 THR 2 48 -62.51 -126.89 REMARK 500 ASP 2 57 -116.09 57.93 REMARK 500 THR 2 60 -60.12 -97.52 REMARK 500 ARG 2 62 173.58 174.48 REMARK 500 ALA 2 85 -60.05 -139.22 REMARK 500 GLU 2 129 71.52 52.07 REMARK 500 ALA 2 135 -71.76 -57.94 REMARK 500 ASP 2 150 -7.85 58.71 REMARK 500 ARG 2 195 -71.63 -74.66 REMARK 500 ASN 2 198 -61.91 -133.71 REMARK 500 PRO 3 54 71.63 -68.33 REMARK 500 PRO 3 137 -179.34 -66.29 REMARK 500 PRO 3 201 -179.87 -68.67 REMARK 500 ASP 3 203 -4.51 66.04 REMARK 500 LEU 3 224 76.06 59.94 REMARK 500 GLU 3 234 -75.81 -121.70 REMARK 500 PHE 4 53 -61.51 -131.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM 1 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6637 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6636 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6638 RELATED DB: EMDB DBREF 3JD7 1 1 281 UNP Q66282 POLG_CXB3W 571 851 DBREF 3JD7 2 1 263 UNP Q66282 POLG_CXB3W 70 332 DBREF 3JD7 3 1 238 UNP Q66282 POLG_CXB3W 333 570 DBREF 3JD7 4 2 69 UNP Q66282 POLG_CXB3W 2 69 SEQADV 3JD7 THR 2 151 UNP Q66282 SER 220 CONFLICT SEQADV 3JD7 VAL 2 245 UNP Q66282 ILE 314 CONFLICT SEQADV 3JD7 GLU 3 234 UNP Q66282 GLN 566 CONFLICT SEQRES 1 1 281 GLY PRO VAL GLU ASP ALA ILE THR ALA ALA ILE GLY ARG SEQRES 2 1 281 VAL ALA ASP THR VAL GLY THR GLY PRO THR ASN SER GLU SEQRES 3 1 281 ALA ILE PRO ALA LEU THR ALA ALA GLU THR GLY HIS THR SEQRES 4 1 281 SER GLN VAL VAL PRO SER ASP THR MET GLN THR ARG HIS SEQRES 5 1 281 VAL LYS ASN TYR HIS SER ARG SER GLU SER THR ILE GLU SEQRES 6 1 281 ASN PHE LEU CYS ARG SER ALA CYS VAL TYR PHE THR GLU SEQRES 7 1 281 TYR GLU ASN SER GLY ALA LYS ARG TYR ALA GLU TRP VAL SEQRES 8 1 281 ILE THR PRO ARG GLN ALA ALA GLN LEU ARG ARG LYS LEU SEQRES 9 1 281 GLU PHE PHE THR TYR VAL ARG PHE ASP LEU GLU LEU THR SEQRES 10 1 281 PHE VAL ILE THR SER THR GLN GLN PRO SER THR THR GLN SEQRES 11 1 281 ASN GLN ASP ALA GLN ILE LEU THR HIS GLN ILE MET TYR SEQRES 12 1 281 VAL PRO PRO GLY GLY PRO VAL PRO ASP LYS VAL ASP SER SEQRES 13 1 281 TYR VAL TRP GLN THR SER THR ASN PRO SER VAL PHE TRP SEQRES 14 1 281 THR GLU GLY ASN ALA PRO PRO ARG MET SER VAL PRO PHE SEQRES 15 1 281 LEU SER ILE GLY ASN ALA TYR SER ASN PHE TYR ASP GLY SEQRES 16 1 281 TRP SER GLU PHE SER ARG ASN GLY VAL TYR GLY ILE ASN SEQRES 17 1 281 THR LEU ASN ASN MET GLY THR LEU TYR ALA ARG HIS VAL SEQRES 18 1 281 ASN ALA GLY SER THR GLY PRO ILE LYS SER THR ILE ARG SEQRES 19 1 281 ILE TYR PHE LYS PRO LYS HIS VAL LYS ALA TRP ILE PRO SEQRES 20 1 281 ARG PRO PRO ARG LEU CYS GLN TYR GLU LYS ALA LYS ASN SEQRES 21 1 281 VAL ASN PHE GLN PRO SER GLY VAL THR THR THR ARG GLN SEQRES 22 1 281 SER ILE THR THR MET THR ASN THR SEQRES 1 2 263 SER PRO THR VAL GLU GLU CYS GLY TYR SER ASP ARG VAL SEQRES 2 2 263 ARG SER ILE THR LEU GLY ASN SER THR ILE THR THR GLN SEQRES 3 2 263 GLU CYS ALA ASN VAL VAL VAL GLY TYR GLY VAL TRP PRO SEQRES 4 2 263 ASP TYR LEU LYS ASP SER GLU ALA THR ALA GLU ASP GLN SEQRES 5 2 263 PRO THR GLN PRO ASP VAL ALA THR CYS ARG PHE TYR THR SEQRES 6 2 263 LEU ASP SER VAL GLN TRP GLN LYS THR SER PRO GLY TRP SEQRES 7 2 263 TRP TRP LYS LEU PRO ASP ALA LEU SER ASN LEU GLY LEU SEQRES 8 2 263 PHE GLY GLN ASN MET GLN TYR HIS TYR LEU GLY ARG THR SEQRES 9 2 263 GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SER LYS PHE SEQRES 10 2 263 HIS GLN GLY CYS LEU LEU VAL VAL CYS VAL PRO GLU ALA SEQRES 11 2 263 GLU MET GLY CYS ALA THR LEU ASN ASN THR PRO SER SER SEQRES 12 2 263 ALA GLU LEU LEU GLY GLY ASP THR ALA LYS GLU PHE ALA SEQRES 13 2 263 ASP LYS PRO VAL ALA SER GLY SER ASN LYS LEU VAL GLN SEQRES 14 2 263 ARG VAL VAL TYR ASN ALA GLY MET GLY VAL GLY VAL GLY SEQRES 15 2 263 ASN LEU THR ILE PHE PRO HIS GLN TRP ILE ASN LEU ARG SEQRES 16 2 263 THR ASN ASN SER ALA THR ILE VAL MET PRO TYR THR ASN SEQRES 17 2 263 SER VAL PRO MET ASP ASN MET PHE ARG HIS ASN ASN VAL SEQRES 18 2 263 THR LEU MET VAL ILE PRO PHE VAL PRO LEU ASP TYR CYS SEQRES 19 2 263 PRO GLY SER THR THR TYR VAL PRO ILE THR VAL THR ILE SEQRES 20 2 263 ALA PRO MET CYS ALA GLU TYR ASN GLY LEU ARG LEU ALA SEQRES 21 2 263 GLY HIS GLN SEQRES 1 3 238 GLY LEU PRO THR MET ASN THR PRO GLY SER CYS GLN PHE SEQRES 2 3 238 LEU THR SER ASP ASP PHE GLN SER PRO SER ALA MET PRO SEQRES 3 3 238 GLN TYR ASP VAL THR PRO GLU MET ARG ILE PRO GLY GLU SEQRES 4 3 238 VAL LYS ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 3 238 VAL PRO VAL GLN ASN VAL GLY GLU LYS VAL ASN SER MET SEQRES 6 3 238 GLU ALA TYR GLN ILE PRO VAL ARG SER ASN GLU GLY SER SEQRES 7 3 238 GLY THR GLN VAL PHE GLY PHE PRO LEU GLN PRO GLY TYR SEQRES 8 3 238 SER SER VAL PHE SER ARG THR LEU LEU GLY GLU ILE LEU SEQRES 9 3 238 ASN TYR TYR THR HIS TRP SER GLY SER ILE LYS LEU THR SEQRES 10 3 238 PHE MET PHE CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 3 238 LEU LEU ALA TYR SER PRO PRO GLY ALA GLY ALA PRO THR SEQRES 12 3 238 LYS ARG VAL ASP ALA MET LEU GLY THR HIS VAL VAL TRP SEQRES 13 3 238 ASP VAL GLY LEU GLN SER SER CYS VAL LEU CYS ILE PRO SEQRES 14 3 238 TRP ILE SER GLN THR HIS TYR ARG TYR VAL ALA SER ASP SEQRES 15 3 238 GLU TYR THR ALA GLY GLY PHE ILE THR CYS TRP TYR GLN SEQRES 16 3 238 THR ASN ILE VAL VAL PRO ALA ASP ALA GLN SER SER CYS SEQRES 17 3 238 TYR ILE MET CYS PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 3 238 VAL ARG LEU LEU LYS ASP THR PRO PHE ILE SER GLN GLU SEQRES 19 3 238 ASN PHE PHE GLN SEQRES 1 4 68 GLY ALA GLN VAL SER THR GLN LYS THR GLY ALA HIS GLU SEQRES 2 4 68 THR GLY LEU ASN ALA SER GLY ASN SER ILE ILE HIS TYR SEQRES 3 4 68 THR ASN ILE ASN TYR TYR LYS ASP ALA ALA SER ASN SER SEQRES 4 4 68 ALA ASN ARG GLN ASP PHE THR GLN ASP PRO SER LYS PHE SEQRES 5 4 68 THR GLU PRO VAL LYS ASP ILE MET ILE LYS SER LEU PRO SEQRES 6 4 68 ALA LEU ASN HET PLM 1 301 18 HETNAM PLM PALMITIC ACID FORMUL 5 PLM C16 H32 O2 HELIX 1 1 ALA 1 33 GLY 1 37 5 5 HELIX 2 2 ARG 1 59 SER 1 62 5 4 HELIX 3 3 THR 1 63 CYS 1 69 1 7 HELIX 4 4 THR 1 93 GLN 1 96 5 4 HELIX 5 5 ALA 1 97 LEU 1 104 1 8 HELIX 6 6 SER 1 156 THR 1 161 5 6 HELIX 7 7 PRO 2 56 THR 2 60 5 5 HELIX 8 8 ALA 2 85 ASN 2 88 5 4 HELIX 9 9 LEU 2 89 TYR 2 98 1 10 HELIX 10 10 SER 2 142 LEU 2 147 1 6 HELIX 11 11 GLY 2 180 PHE 2 187 5 8 HELIX 12 12 LEU 3 43 GLU 3 48 1 6 HELIX 13 13 GLU 3 60 GLN 3 69 5 10 HELIX 14 14 SER 3 92 ARG 3 97 1 6 HELIX 15 15 THR 3 98 TYR 3 106 1 9 HELIX 16 16 LYS 3 144 LEU 3 150 1 7 HELIX 17 17 ASP 4 35 ASN 4 39 5 5 HELIX 18 18 ASP 4 49 PHE 4 53 5 5 SHEET 1 A 4 ALA 1 72 GLU 1 80 0 SHEET 2 A 4 ILE 1 229 PHE 1 237 -1 O SER 1 231 N TYR 1 79 SHEET 3 A 4 GLU 1 115 GLN 1 124 -1 N THR 1 121 O THR 1 232 SHEET 4 A 4 ARG 1 177 SER 1 179 -1 O MET 1 178 N LEU 1 116 SHEET 1 B 4 TYR 1 87 VAL 1 91 0 SHEET 2 B 4 THR 1 215 HIS 1 220 -1 O LEU 1 216 N TRP 1 90 SHEET 3 B 4 THR 1 138 VAL 1 144 -1 N MET 1 142 O TYR 1 217 SHEET 4 B 4 SER 1 166 THR 1 170 -1 O TRP 1 169 N HIS 1 139 SHEET 1 C 4 TYR 1 189 SER 1 190 0 SHEET 2 C 4 PHE 1 107 ARG 1 111 -1 N VAL 1 110 O TYR 1 189 SHEET 3 C 4 LYS 1 243 PRO 1 247 -1 O LYS 1 243 N ARG 1 111 SHEET 4 C 4 GLU 3 39 VAL 3 40 -1 O VAL 3 40 N ALA 1 244 SHEET 1 D 2 ARG 2 14 LEU 2 18 0 SHEET 2 D 2 SER 2 21 THR 2 25 -1 O ILE 2 23 N ILE 2 16 SHEET 1 E 5 VAL 2 32 VAL 2 33 0 SHEET 2 E 5 SER 2 199 MET 2 204 1 O VAL 2 203 N VAL 2 32 SHEET 3 E 5 HIS 2 99 GLN 2 111 -1 N TYR 2 106 O MET 2 204 SHEET 4 E 5 VAL 2 241 LEU 2 257 -1 O THR 2 244 N GLN 2 111 SHEET 5 E 5 TYR 2 64 THR 2 65 -1 N TYR 2 64 O ILE 2 247 SHEET 1 F 5 VAL 2 32 VAL 2 33 0 SHEET 2 F 5 SER 2 199 MET 2 204 1 O VAL 2 203 N VAL 2 32 SHEET 3 F 5 HIS 2 99 GLN 2 111 -1 N TYR 2 106 O MET 2 204 SHEET 4 F 5 VAL 2 241 LEU 2 257 -1 O THR 2 244 N GLN 2 111 SHEET 5 F 5 VAL 2 69 TRP 2 71 -1 N VAL 2 69 O ILE 2 243 SHEET 1 G 5 LYS 2 153 GLU 2 154 0 SHEET 2 G 5 TRP 2 78 LYS 2 81 -1 N TRP 2 79 O LYS 2 153 SHEET 3 G 5 VAL 2 221 VAL 2 225 -1 O LEU 2 223 N TRP 2 80 SHEET 4 G 5 VAL 2 124 PRO 2 128 -1 N VAL 2 127 O THR 2 222 SHEET 5 G 5 HIS 2 189 GLN 2 190 -1 O GLN 2 190 N VAL 2 124 SHEET 1 H 2 GLN 2 119 CYS 2 121 0 SHEET 2 H 2 VAL 2 229 ASP 2 232 -1 O ASP 2 232 N GLN 2 119 SHEET 1 I 3 SER 3 51 VAL 3 52 0 SHEET 2 I 3 CYS 3 208 ALA 3 216 -1 O VAL 3 214 N SER 3 51 SHEET 3 I 3 ILE 3 70 VAL 3 72 -1 N VAL 3 72 O CYS 3 208 SHEET 1 J 4 SER 3 51 VAL 3 52 0 SHEET 2 J 4 CYS 3 208 ALA 3 216 -1 O VAL 3 214 N SER 3 51 SHEET 3 J 4 ILE 3 114 PHE 3 120 -1 N LYS 3 115 O SER 3 215 SHEET 4 J 4 CYS 3 164 CYS 3 167 -1 O LEU 3 166 N LEU 3 116 SHEET 1 K 4 GLN 3 81 PRO 3 86 0 SHEET 2 K 4 PHE 3 189 VAL 3 199 -1 O CYS 3 192 N VAL 3 82 SHEET 3 K 4 THR 3 127 SER 3 135 -1 N LEU 3 131 O TRP 3 193 SHEET 4 K 4 THR 3 152 ASP 3 157 -1 O TRP 3 156 N PHE 3 130 SHEET 1 L 3 ARG 3 177 TYR 3 178 0 SHEET 2 L 3 TYR 3 107 SER 3 111 -1 N TRP 3 110 O ARG 3 177 SHEET 3 L 3 SER 3 221 LEU 3 225 -1 O SER 3 221 N SER 3 111 SHEET 1 M 2 GLN 4 4 SER 4 6 0 SHEET 2 M 2 TYR 4 27 ASN 4 29 -1 O ASN 4 29 N GLN 4 4 SITE 1 AC1 9 ILE 1 92 PRO 1 94 ARG 1 95 LEU 1 114 SITE 2 AC1 9 LEU 1 116 TYR 1 143 MET 1 178 ASN 1 211 SITE 3 AC1 9 MET 1 213 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 377 0 1 18 47 0 3 6 0 0 0 68 END