HEADER PROTEIN TRANSPORT 21-AUG-09 3IQY TITLE ACTIVE SITE MUTANTS OF B. SUBTILIS SECA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSLOCASE SUBUNIT SECA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BSU35300, DIV, DIV+, SECA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7-DIV KEYWDS ALPHA BETA, ATP-BINDING, CELL MEMBRANE, MEMBRANE, METAL-BINDING, KEYWDS 2 NUCLEOTIDE-BINDING, PROTEIN TRANSPORT, TRANSLOCATION, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.KIM,J.F.HUNT REVDAT 4 13-OCT-21 3IQY 1 REMARK SEQADV REVDAT 3 03-APR-13 3IQY 1 JRNL REVDAT 2 06-MAR-13 3IQY 1 JRNL VERSN REVDAT 1 11-AUG-10 3IQY 0 JRNL AUTH D.M.KIM,H.ZHENG,Y.J.HUANG,G.T.MONTELIONE,J.F.HUNT JRNL TITL ATPASE ACTIVE-SITE ELECTROSTATIC INTERACTIONS CONTROL THE JRNL TITL 2 GLOBAL CONFORMATION OF THE 100 KDA SECA TRANSLOCASE. JRNL REF J.AM.CHEM.SOC. V. 135 2999 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23167435 JRNL DOI 10.1021/JA306361Q REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 370437.210 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 19062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1251 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 64 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6399 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.35000 REMARK 3 B22 (A**2) : -9.35000 REMARK 3 B33 (A**2) : 18.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 72.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22533 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : 0.72700 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1M6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM BES PH 7.0, 2.1 M AMMONIUM REMARK 280 SULFATE, 32 % GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 299K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.65533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.31067 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 101.31067 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.65533 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE ASSEMBLY OF THE BIOLOGICAL UNIT THAT REMARK 300 IS SHOWN IN REMARK 350 IS PUTATIVE AT THE TIME OF DEPOSITION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 151.96600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 803 REMARK 465 ASP A 804 REMARK 465 ASN A 805 REMARK 465 LYS A 806 REMARK 465 LYS A 807 REMARK 465 ALA A 808 REMARK 465 LYS A 809 REMARK 465 LYS A 810 REMARK 465 ALA A 811 REMARK 465 PRO A 812 REMARK 465 VAL A 813 REMARK 465 ARG A 814 REMARK 465 LYS A 815 REMARK 465 VAL A 816 REMARK 465 VAL A 817 REMARK 465 ASP A 818 REMARK 465 ILE A 819 REMARK 465 GLY A 820 REMARK 465 ARG A 821 REMARK 465 ASN A 822 REMARK 465 ALA A 823 REMARK 465 PRO A 824 REMARK 465 CYS A 825 REMARK 465 HIS A 826 REMARK 465 CYS A 827 REMARK 465 GLY A 828 REMARK 465 SER A 829 REMARK 465 GLY A 830 REMARK 465 LYS A 831 REMARK 465 LYS A 832 REMARK 465 TYR A 833 REMARK 465 LYS A 834 REMARK 465 ASN A 835 REMARK 465 CYS A 836 REMARK 465 CYS A 837 REMARK 465 GLY A 838 REMARK 465 ARG A 839 REMARK 465 THR A 840 REMARK 465 GLU A 841 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 81 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 56 153.43 -34.44 REMARK 500 PRO A 81 139.06 -30.96 REMARK 500 SER A 135 -70.91 -57.99 REMARK 500 ALA A 170 160.63 -45.51 REMARK 500 SER A 175 -178.20 -177.22 REMARK 500 HIS A 202 -75.27 -106.15 REMARK 500 GLN A 208 45.45 78.37 REMARK 500 ASP A 215 -79.05 -54.95 REMARK 500 GLU A 216 7.70 -59.94 REMARK 500 ALA A 228 39.09 -76.00 REMARK 500 SER A 230 40.95 -76.87 REMARK 500 THR A 243 -95.33 -59.42 REMARK 500 LYS A 245 54.14 -143.58 REMARK 500 THR A 251 64.28 -174.03 REMARK 500 ALA A 258 56.15 -119.12 REMARK 500 ILE A 275 32.30 -70.58 REMARK 500 ASP A 276 -142.39 66.37 REMARK 500 LEU A 278 90.11 -51.04 REMARK 500 PHE A 279 70.26 -110.22 REMARK 500 ASP A 280 -73.99 -156.68 REMARK 500 VAL A 284 -78.93 -85.14 REMARK 500 ALA A 285 -79.71 -44.48 REMARK 500 THR A 320 44.87 87.95 REMARK 500 LYS A 325 -109.47 -62.00 REMARK 500 TYR A 360 -73.27 -72.11 REMARK 500 PHE A 361 -1.84 -53.12 REMARK 500 ALA A 374 -33.49 -132.31 REMARK 500 GLU A 378 -39.14 -34.78 REMARK 500 ASN A 386 50.50 33.95 REMARK 500 PRO A 393 176.18 -54.39 REMARK 500 ALA A 487 -81.59 -48.51 REMARK 500 LEU A 502 29.67 -75.14 REMARK 500 GLU A 511 152.27 171.94 REMARK 500 ARG A 525 13.58 -68.37 REMARK 500 GLN A 529 51.02 75.91 REMARK 500 ASP A 564 -1.23 -58.39 REMARK 500 GLN A 570 70.92 -119.09 REMARK 500 ASP A 619 59.37 -113.94 REMARK 500 ARG A 645 102.66 -51.75 REMARK 500 GLU A 646 15.92 33.48 REMARK 500 GLU A 647 88.58 -62.12 REMARK 500 LEU A 648 86.06 61.90 REMARK 500 PRO A 649 -94.42 -27.89 REMARK 500 GLU A 651 58.28 -101.79 REMARK 500 ILE A 676 66.90 -117.95 REMARK 500 LEU A 687 -74.50 -64.85 REMARK 500 HIS A 739 -16.05 -47.20 REMARK 500 LEU A 740 -77.96 -81.43 REMARK 500 ALA A 744 160.82 -41.50 REMARK 500 LYS A 773 -74.50 -55.83 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IQM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS SUBTILIS SECA E208Q MUTANT DBREF 3IQY A 1 841 UNP P28366 SECA_BACSU 1 841 SEQADV 3IQY GLN A 208 UNP P28366 GLU 208 ENGINEERED MUTATION SEQADV 3IQY LYS A 489 UNP P28366 ARG 489 ENGINEERED MUTATION SEQRES 1 A 841 MET LEU GLY ILE LEU ASN LYS MET PHE ASP PRO THR LYS SEQRES 2 A 841 ARG THR LEU ASN ARG TYR GLU LYS ILE ALA ASN ASP ILE SEQRES 3 A 841 ASP ALA ILE ARG GLY ASP TYR GLU ASN LEU SER ASP ASP SEQRES 4 A 841 ALA LEU LYS HIS LYS THR ILE GLU PHE LYS GLU ARG LEU SEQRES 5 A 841 GLU LYS GLY ALA THR THR ASP ASP LEU LEU VAL GLU ALA SEQRES 6 A 841 PHE ALA VAL VAL ARG GLU ALA SER ARG ARG VAL THR GLY SEQRES 7 A 841 MET PHE PRO PHE LYS VAL GLN LEU MET GLY GLY VAL ALA SEQRES 8 A 841 LEU HIS ASP GLY ASN ILE ALA GLU MET LYS THR GLY GLU SEQRES 9 A 841 GLY LYS THR LEU THR SER THR LEU PRO VAL TYR LEU ASN SEQRES 10 A 841 ALA LEU THR GLY LYS GLY VAL HIS VAL VAL THR VAL ASN SEQRES 11 A 841 GLU TYR LEU ALA SER ARG ASP ALA GLU GLN MET GLY LYS SEQRES 12 A 841 ILE PHE GLU PHE LEU GLY LEU THR VAL GLY LEU ASN LEU SEQRES 13 A 841 ASN SER MET SER LYS ASP GLU LYS ARG GLU ALA TYR ALA SEQRES 14 A 841 ALA ASP ILE THR TYR SER THR ASN ASN GLU LEU GLY PHE SEQRES 15 A 841 ASP TYR LEU ARG ASP ASN MET VAL LEU TYR LYS GLU GLN SEQRES 16 A 841 MET VAL GLN ARG PRO LEU HIS PHE ALA VAL ILE ASP GLN SEQRES 17 A 841 VAL ASP SER ILE LEU ILE ASP GLU ALA ARG THR PRO LEU SEQRES 18 A 841 ILE ILE SER GLY GLN ALA ALA LYS SER THR LYS LEU TYR SEQRES 19 A 841 VAL GLN ALA ASN ALA PHE VAL ARG THR LEU LYS ALA GLU SEQRES 20 A 841 LYS ASP TYR THR TYR ASP ILE LYS THR LYS ALA VAL GLN SEQRES 21 A 841 LEU THR GLU GLU GLY MET THR LYS ALA GLU LYS ALA PHE SEQRES 22 A 841 GLY ILE ASP ASN LEU PHE ASP VAL LYS HIS VAL ALA LEU SEQRES 23 A 841 ASN HIS HIS ILE ASN GLN ALA LEU LYS ALA HIS VAL ALA SEQRES 24 A 841 MET GLN LYS ASP VAL ASP TYR VAL VAL GLU ASP GLY GLN SEQRES 25 A 841 VAL VAL ILE VAL ASP SER PHE THR GLY ARG LEU MET LYS SEQRES 26 A 841 GLY ARG ARG TYR SER GLU GLY LEU HIS GLN ALA ILE GLU SEQRES 27 A 841 ALA LYS GLU GLY LEU GLU ILE GLN ASN GLU SER MET THR SEQRES 28 A 841 LEU ALA THR ILE THR PHE GLN ASN TYR PHE ARG MET TYR SEQRES 29 A 841 GLU LYS LEU ALA GLY MET THR GLY THR ALA LYS THR GLU SEQRES 30 A 841 GLU GLU GLU PHE ARG ASN ILE TYR ASN MET GLN VAL VAL SEQRES 31 A 841 THR ILE PRO THR ASN ARG PRO VAL VAL ARG ASP ASP ARG SEQRES 32 A 841 PRO ASP LEU ILE TYR ARG THR MET GLU GLY LYS PHE LYS SEQRES 33 A 841 ALA VAL ALA GLU ASP VAL ALA GLN ARG TYR MET THR GLY SEQRES 34 A 841 GLN PRO VAL LEU VAL GLY THR VAL ALA VAL GLU THR SER SEQRES 35 A 841 GLU LEU ILE SER LYS LEU LEU LYS ASN LYS GLY ILE PRO SEQRES 36 A 841 HIS GLN VAL LEU ASN ALA LYS ASN HIS GLU ARG GLU ALA SEQRES 37 A 841 GLN ILE ILE GLU GLU ALA GLY GLN LYS GLY ALA VAL THR SEQRES 38 A 841 ILE ALA THR ASN MET ALA GLY LYS GLY THR ASP ILE LYS SEQRES 39 A 841 LEU GLY GLU GLY VAL LYS GLU LEU GLY GLY LEU ALA VAL SEQRES 40 A 841 VAL GLY THR GLU ARG HIS GLU SER ARG ARG ILE ASP ASN SEQRES 41 A 841 GLN LEU ARG GLY ARG SER GLY ARG GLN GLY ASP PRO GLY SEQRES 42 A 841 ILE THR GLN PHE TYR LEU SER MET GLU ASP GLU LEU MET SEQRES 43 A 841 ARG ARG PHE GLY ALA GLU ARG THR MET ALA MET LEU ASP SEQRES 44 A 841 ARG PHE GLY MET ASP ASP SER THR PRO ILE GLN SER LYS SEQRES 45 A 841 MET VAL SER ARG ALA VAL GLU SER SER GLN LYS ARG VAL SEQRES 46 A 841 GLU GLY ASN ASN PHE ASP SER ARG LYS GLN LEU LEU GLN SEQRES 47 A 841 TYR ASP ASP VAL LEU ARG GLN GLN ARG GLU VAL ILE TYR SEQRES 48 A 841 LYS GLN ARG PHE GLU VAL ILE ASP SER GLU ASN LEU ARG SEQRES 49 A 841 GLU ILE VAL GLU ASN MET ILE LYS SER SER LEU GLU ARG SEQRES 50 A 841 ALA ILE ALA ALA TYR THR PRO ARG GLU GLU LEU PRO GLU SEQRES 51 A 841 GLU TRP LYS LEU ASP GLY LEU VAL ASP LEU ILE ASN THR SEQRES 52 A 841 THR TYR LEU ASP GLU GLY ALA LEU GLU LYS SER ASP ILE SEQRES 53 A 841 PHE GLY LYS GLU PRO ASP GLU MET LEU GLU LEU ILE MET SEQRES 54 A 841 ASP ARG ILE ILE THR LYS TYR ASN GLU LYS GLU GLU GLN SEQRES 55 A 841 PHE GLY LYS GLU GLN MET ARG GLU PHE GLU LYS VAL ILE SEQRES 56 A 841 VAL LEU ARG ALA VAL ASP SER LYS TRP MET ASP HIS ILE SEQRES 57 A 841 ASP ALA MET ASP GLN LEU ARG GLN GLY ILE HIS LEU ARG SEQRES 58 A 841 ALA TYR ALA GLN THR ASN PRO LEU ARG GLU TYR GLN MET SEQRES 59 A 841 GLU GLY PHE ALA MET PHE GLU HIS MET ILE GLU SER ILE SEQRES 60 A 841 GLU ASP GLU VAL ALA LYS PHE VAL MET LYS ALA GLU ILE SEQRES 61 A 841 GLU ASN ASN LEU GLU ARG GLU GLU VAL VAL GLN GLY GLN SEQRES 62 A 841 THR THR ALA HIS GLN PRO GLN GLU GLY ASP ASP ASN LYS SEQRES 63 A 841 LYS ALA LYS LYS ALA PRO VAL ARG LYS VAL VAL ASP ILE SEQRES 64 A 841 GLY ARG ASN ALA PRO CYS HIS CYS GLY SER GLY LYS LYS SEQRES 65 A 841 TYR LYS ASN CYS CYS GLY ARG THR GLU HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 4(O4 S 2-) HELIX 1 1 GLY A 3 PHE A 9 5 7 HELIX 2 2 ASP A 10 ILE A 29 1 20 HELIX 3 3 ILE A 29 ASN A 35 1 7 HELIX 4 4 SER A 37 LYS A 54 1 18 HELIX 5 5 LEU A 61 THR A 77 1 17 HELIX 6 6 PHE A 82 ASP A 94 1 13 HELIX 7 7 GLY A 105 ALA A 118 1 14 HELIX 8 8 ASN A 130 LEU A 148 1 19 HELIX 9 9 SER A 160 TYR A 168 1 9 HELIX 10 10 ASN A 177 ASP A 187 1 11 HELIX 11 11 TYR A 192 MET A 196 5 5 HELIX 12 12 GLN A 208 ILE A 214 1 7 HELIX 13 13 ASP A 215 ARG A 218 5 4 HELIX 14 14 SER A 230 THR A 243 1 14 HELIX 15 15 THR A 262 ALA A 269 1 8 HELIX 16 16 VAL A 284 ALA A 299 1 16 HELIX 17 17 GLY A 332 GLU A 341 1 10 HELIX 18 18 THR A 356 ARG A 362 1 7 HELIX 19 19 ALA A 374 THR A 376 5 3 HELIX 20 20 GLU A 377 ASN A 386 1 10 HELIX 21 21 THR A 410 GLY A 429 1 20 HELIX 22 22 ALA A 438 ASN A 451 1 14 HELIX 23 23 ASN A 463 GLU A 473 1 11 HELIX 24 24 SER A 515 GLY A 524 1 10 HELIX 25 25 ASP A 543 ARG A 548 1 6 HELIX 26 26 ALA A 551 ARG A 560 1 10 HELIX 27 27 SER A 571 ASP A 619 1 49 HELIX 28 28 LEU A 623 THR A 643 1 21 HELIX 29 29 LYS A 653 TYR A 665 1 13 HELIX 30 30 GLU A 672 PHE A 677 5 6 HELIX 31 31 GLU A 680 PHE A 703 1 24 HELIX 32 32 GLN A 707 ILE A 738 1 32 HELIX 33 33 ASN A 747 ALA A 778 1 32 SHEET 1 A 4 PHE A 203 ASP A 207 0 SHEET 2 A 4 LYS A 366 THR A 371 1 O ALA A 368 N ILE A 206 SHEET 3 A 4 ILE A 97 GLU A 99 1 N ALA A 98 O GLY A 369 SHEET 4 A 4 VAL A 389 THR A 391 1 O VAL A 390 N ILE A 97 SHEET 1 B 3 HIS A 125 THR A 128 0 SHEET 2 B 3 ILE A 172 THR A 176 1 O THR A 173 N VAL A 126 SHEET 3 B 3 VAL A 152 LEU A 154 1 N GLY A 153 O ILE A 172 SHEET 1 C 3 MET A 350 ILE A 355 0 SHEET 2 C 3 LEU A 221 GLY A 225 -1 N LEU A 221 O ILE A 355 SHEET 3 C 3 THR A 795 HIS A 797 -1 O HIS A 797 N ILE A 222 SHEET 1 D 2 TYR A 306 VAL A 308 0 SHEET 2 D 2 VAL A 313 ILE A 315 -1 O VAL A 314 N VAL A 307 SHEET 1 E 3 VAL A 399 ASP A 402 0 SHEET 2 E 3 PRO A 532 SER A 540 1 O GLY A 533 N ASP A 401 SHEET 3 E 3 LEU A 406 TYR A 408 1 N LEU A 406 O LEU A 539 SHEET 1 F 6 VAL A 399 ASP A 402 0 SHEET 2 F 6 PRO A 532 SER A 540 1 O GLY A 533 N ASP A 401 SHEET 3 F 6 LEU A 505 GLY A 509 1 N GLY A 509 O GLN A 536 SHEET 4 F 6 VAL A 432 THR A 436 1 N LEU A 433 O VAL A 508 SHEET 5 F 6 VAL A 480 THR A 484 1 O ALA A 483 N THR A 436 SHEET 6 F 6 GLN A 457 LEU A 459 1 N GLN A 457 O ILE A 482 SITE 1 AC1 5 THR A 102 GLY A 103 GLU A 104 GLY A 105 SITE 2 AC1 5 LYS A 106 SITE 1 AC2 4 TYR A 408 ARG A 409 THR A 410 THR A 567 SITE 1 AC3 2 ASN A 520 ARG A 523 SITE 1 AC4 3 ASN A 383 LYS A 594 GLN A 598 CRYST1 131.015 131.015 151.966 90.00 90.00 120.00 P 31 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007633 0.004407 0.000000 0.00000 SCALE2 0.000000 0.008813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006580 0.00000 MASTER 382 0 4 33 21 0 5 6 0 0 0 65 END