HEADER TRANSFERASE 06-AUG-09 3IKL TITLE CRYSTAL STRUCTURE OF POL GB DELTA-I4. CAVEAT 3IKL FOR BOTH CHAINS, RESIDUE GLY181 AND ARG182 HAVE APPARENT CAVEAT 2 3IKL COVALENT LINK IN THE COORDINATES. HOWEVER, THERE SHOULD BE CAVEAT 3 3IKL A LEU RESIDUE IN BETWEEN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE SUBUNIT GAMMA-2, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT, POLG-BETA, COMPND 5 MTPOLB, DNA POLYMERASE GAMMA ACCESSORY 55 KDA SUBUNIT, P55; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLG2, MTPOLB KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.LEE,W.D.KENNEDY,Y.W.YIN REVDAT 2 26-JUL-17 3IKL 1 SOURCE REMARK REVDAT 1 25-AUG-10 3IKL 0 JRNL AUTH Y.S.LEE,W.D.KENNEDY,Y.W.YIN JRNL TITL STRUCTURAL INSIGHT INTO PROCESSIVE HUMAN MITOCHONDRIAL DNA JRNL TITL 2 SYNTHESIS AND DISEASE-RELATED POLYMERASE MUTATIONS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 139 312 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19837034 JRNL DOI 10.1016/J.CELL.2009.07.050 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 50156.240 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 74.6 REMARK 3 NUMBER OF REFLECTIONS : 14327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 33.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1006 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE : 0.4660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 49 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.067 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.74000 REMARK 3 B22 (A**2) : 16.74000 REMARK 3 B33 (A**2) : -33.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM SIGMAA (A) : 0.82 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.59 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.93 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 19.59 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3IKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.14 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16573 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.35200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.17600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.52800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: A HOMODIMERIC PROTEIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 ARG A 8 REMARK 465 ALA A 9 REMARK 465 CYS A 10 REMARK 465 HIS A 11 REMARK 465 LYS A 12 REMARK 465 VAL A 13 REMARK 465 CYS A 14 REMARK 465 ARG A 15 REMARK 465 CYS A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 PHE A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 GLN A 29 REMARK 465 PRO A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 32 REMARK 465 LEU A 33 REMARK 465 THR A 34 REMARK 465 GLU A 35 REMARK 465 ARG A 36 REMARK 465 SER A 37 REMARK 465 SER A 38 REMARK 465 PRO A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 GLY A 42 REMARK 465 HIS A 43 REMARK 465 VAL A 44 REMARK 465 LYS A 45 REMARK 465 SER A 46 REMARK 465 HIS A 47 REMARK 465 ALA A 48 REMARK 465 GLU A 49 REMARK 465 LEU A 50 REMARK 465 GLU A 51 REMARK 465 GLY A 52 REMARK 465 ASN A 53 REMARK 465 GLY A 54 REMARK 465 GLU A 55 REMARK 465 HIS A 56 REMARK 465 PRO A 57 REMARK 465 GLU A 58 REMARK 465 ALA A 59 REMARK 465 PRO A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 GLY A 63 REMARK 465 GLU A 64 REMARK 465 GLY A 65 REMARK 465 LEU A 181A REMARK 465 PHE A 219 REMARK 465 ASP A 220 REMARK 465 THR A 221 REMARK 465 LYS A 222 REMARK 465 GLN A 223 REMARK 465 ILE A 224 REMARK 465 ARG A 225 REMARK 465 ASN A 226 REMARK 465 GLY A 227 REMARK 465 VAL A 228 REMARK 465 LEU A 356 REMARK 465 THR A 357 REMARK 465 GLU A 358 REMARK 465 ASN A 359 REMARK 465 SER A 360 REMARK 465 PHE A 361 REMARK 465 THR A 362 REMARK 465 ARG A 363 REMARK 465 LYS A 364 REMARK 465 LYS A 365 REMARK 465 ASN A 366 REMARK 465 LEU A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 ARG B 8 REMARK 465 ALA B 9 REMARK 465 CYS B 10 REMARK 465 HIS B 11 REMARK 465 LYS B 12 REMARK 465 VAL B 13 REMARK 465 CYS B 14 REMARK 465 ARG B 15 REMARK 465 CYS B 16 REMARK 465 LEU B 17 REMARK 465 LEU B 18 REMARK 465 SER B 19 REMARK 465 GLY B 20 REMARK 465 PHE B 21 REMARK 465 GLY B 22 REMARK 465 GLY B 23 REMARK 465 ARG B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 28 REMARK 465 GLN B 29 REMARK 465 PRO B 30 REMARK 465 GLU B 31 REMARK 465 LEU B 32 REMARK 465 LEU B 33 REMARK 465 THR B 34 REMARK 465 GLU B 35 REMARK 465 ARG B 36 REMARK 465 SER B 37 REMARK 465 SER B 38 REMARK 465 PRO B 39 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 GLY B 42 REMARK 465 HIS B 43 REMARK 465 VAL B 44 REMARK 465 LYS B 45 REMARK 465 SER B 46 REMARK 465 HIS B 47 REMARK 465 ALA B 48 REMARK 465 GLU B 49 REMARK 465 LEU B 50 REMARK 465 GLU B 51 REMARK 465 GLY B 52 REMARK 465 ASN B 53 REMARK 465 GLY B 54 REMARK 465 GLU B 55 REMARK 465 HIS B 56 REMARK 465 PRO B 57 REMARK 465 GLU B 58 REMARK 465 ALA B 59 REMARK 465 PRO B 60 REMARK 465 GLY B 61 REMARK 465 SER B 62 REMARK 465 GLY B 63 REMARK 465 GLU B 64 REMARK 465 GLY B 65 REMARK 465 SER B 66 REMARK 465 LEU B 181A REMARK 465 PHE B 219 REMARK 465 ASP B 220 REMARK 465 THR B 221 REMARK 465 LYS B 222 REMARK 465 GLN B 223 REMARK 465 ILE B 224 REMARK 465 ARG B 225 REMARK 465 ASN B 226 REMARK 465 GLY B 227 REMARK 465 VAL B 228 REMARK 465 LEU B 356 REMARK 465 THR B 357 REMARK 465 GLU B 358 REMARK 465 ASN B 359 REMARK 465 SER B 360 REMARK 465 PHE B 361 REMARK 465 THR B 362 REMARK 465 ARG B 363 REMARK 465 LYS B 364 REMARK 465 LYS B 365 REMARK 465 ASN B 366 REMARK 465 LEU B 367 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 388 N GLY A 390 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 124 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 PRO A 140 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO B 333 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 PRO B 376 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 88 -37.66 -24.19 REMARK 500 ASP A 89 -81.65 -58.81 REMARK 500 SER A 90 -47.83 -22.42 REMARK 500 LEU A 91 -71.41 -66.66 REMARK 500 VAL A 120 -100.69 -55.67 REMARK 500 PHE A 121 -82.80 -33.19 REMARK 500 ARG A 122 96.14 -63.40 REMARK 500 GLN A 124 32.31 161.03 REMARK 500 LEU A 131 172.66 -44.08 REMARK 500 PRO A 140 82.29 -58.85 REMARK 500 ASP A 142 135.22 43.47 REMARK 500 SER A 143 71.40 -67.38 REMARK 500 ARG A 146 -29.07 59.08 REMARK 500 ARG A 182 135.37 -36.14 REMARK 500 GLU A 191 -36.58 -38.59 REMARK 500 TYR A 193 -39.72 -22.20 REMARK 500 CYS A 196 0.50 -67.80 REMARK 500 ASN A 201 21.94 45.29 REMARK 500 TYR A 206 139.98 177.33 REMARK 500 PRO A 245 -46.22 -29.77 REMARK 500 PHE A 254 -83.92 -61.98 REMARK 500 LEU A 256 -69.70 -28.57 REMARK 500 SER A 269 73.27 -178.30 REMARK 500 SER A 271 4.86 -57.61 REMARK 500 ASP A 280 84.21 49.88 REMARK 500 LYS A 285 111.21 72.41 REMARK 500 PRO A 294 -33.76 -29.81 REMARK 500 HIS A 309 -121.41 -52.64 REMARK 500 GLU A 310 -65.90 -1.90 REMARK 500 TYR A 315 76.42 -111.04 REMARK 500 LYS A 321 -7.05 -49.59 REMARK 500 LEU A 322 -122.06 -121.51 REMARK 500 HIS A 323 99.51 20.67 REMARK 500 ASP A 326 -87.09 -101.95 REMARK 500 ARG A 328 -17.46 114.19 REMARK 500 PRO A 333 163.51 -47.24 REMARK 500 LYS A 370 -98.17 -115.29 REMARK 500 VAL A 371 131.44 62.18 REMARK 500 ALA A 379 137.39 -29.40 REMARK 500 LYS A 382 -78.45 -72.24 REMARK 500 ASP A 386 -136.31 -140.49 REMARK 500 ARG A 389 64.64 -33.56 REMARK 500 PRO A 391 -101.02 -73.07 REMARK 500 THR A 392 -87.40 -159.74 REMARK 500 LEU A 393 -77.43 -28.13 REMARK 500 LEU A 395 -70.55 -53.44 REMARK 500 ARG A 396 46.67 -77.80 REMARK 500 GLN A 397 -68.51 -126.38 REMARK 500 TYR A 417 -9.07 -56.57 REMARK 500 THR A 420 -131.82 -68.62 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3IKL A 1 146 UNP Q9UHN1 DPOG2_HUMAN 1 146 DBREF 3IKL A 181A 485 UNP Q9UHN1 DPOG2_HUMAN 181 485 DBREF 3IKL B 1 146 UNP Q9UHN1 DPOG2_HUMAN 1 146 DBREF 3IKL B 181A 485 UNP Q9UHN1 DPOG2_HUMAN 181 485 SEQADV 3IKL GLY A 180 UNP Q9UHN1 LINKER SEQADV 3IKL GLY A 181 UNP Q9UHN1 LINKER SEQADV 3IKL HIS A 486 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 487 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 488 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 489 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 490 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 491 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL GLY B 180 UNP Q9UHN1 LINKER SEQADV 3IKL GLY B 181 UNP Q9UHN1 LINKER SEQADV 3IKL HIS B 486 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 487 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 488 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 489 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 490 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 491 UNP Q9UHN1 EXPRESSION TAG SEQRES 1 A 459 MET ARG SER ARG VAL ALA VAL ARG ALA CYS HIS LYS VAL SEQRES 2 A 459 CYS ARG CYS LEU LEU SER GLY PHE GLY GLY ARG VAL ASP SEQRES 3 A 459 ALA GLY GLN PRO GLU LEU LEU THR GLU ARG SER SER PRO SEQRES 4 A 459 LYS GLY GLY HIS VAL LYS SER HIS ALA GLU LEU GLU GLY SEQRES 5 A 459 ASN GLY GLU HIS PRO GLU ALA PRO GLY SER GLY GLU GLY SEQRES 6 A 459 SER GLU ALA LEU LEU GLU ILE CYS GLN ARG ARG HIS PHE SEQRES 7 A 459 LEU SER GLY SER LYS GLN GLN LEU SER ARG ASP SER LEU SEQRES 8 A 459 LEU SER GLY CYS HIS PRO GLY PHE GLY PRO LEU GLY VAL SEQRES 9 A 459 GLU LEU ARG LYS ASN LEU ALA ALA GLU TRP TRP THR SER SEQRES 10 A 459 VAL VAL VAL PHE ARG GLU GLN VAL PHE PRO VAL ASP ALA SEQRES 11 A 459 LEU HIS HIS LYS PRO GLY PRO LEU LEU PRO GLY ASP SER SEQRES 12 A 459 ALA PHE ARG GLY GLY LEU ARG GLU ASN LEU LEU HIS GLY SEQRES 13 A 459 ALA LEU GLU HIS TYR VAL ASN CYS LEU ASP LEU VAL ASN SEQRES 14 A 459 LYS ARG LEU PRO TYR GLY LEU ALA GLN ILE GLY VAL CYS SEQRES 15 A 459 PHE HIS PRO VAL PHE ASP THR LYS GLN ILE ARG ASN GLY SEQRES 16 A 459 VAL LYS SER ILE GLY GLU LYS THR GLU ALA SER LEU VAL SEQRES 17 A 459 TRP PHE THR PRO PRO ARG THR SER ASN GLN TRP LEU ASP SEQRES 18 A 459 PHE TRP LEU ARG HIS ARG LEU GLN TRP TRP ARG LYS PHE SEQRES 19 A 459 ALA MET SER PRO SER ASN PHE SER SER SER ASP CYS GLN SEQRES 20 A 459 ASP GLU GLU GLY ARG LYS GLY ASN LYS LEU TYR TYR ASN SEQRES 21 A 459 PHE PRO TRP GLY LYS GLU LEU ILE GLU THR LEU TRP ASN SEQRES 22 A 459 LEU GLY ASP HIS GLU LEU LEU HIS MET TYR PRO GLY ASN SEQRES 23 A 459 VAL SER LYS LEU HIS GLY ARG ASP GLY ARG LYS ASN VAL SEQRES 24 A 459 VAL PRO CYS VAL LEU SER VAL ASN GLY ASP LEU ASP ARG SEQRES 25 A 459 GLY MET LEU ALA TYR LEU TYR ASP SER PHE GLN LEU THR SEQRES 26 A 459 GLU ASN SER PHE THR ARG LYS LYS ASN LEU HIS ARG LYS SEQRES 27 A 459 VAL LEU LYS LEU HIS PRO CYS LEU ALA PRO ILE LYS VAL SEQRES 28 A 459 ALA LEU ASP VAL GLY ARG GLY PRO THR LEU GLU LEU ARG SEQRES 29 A 459 GLN VAL CYS GLN GLY LEU PHE ASN GLU LEU LEU GLU ASN SEQRES 30 A 459 GLY ILE SER VAL TRP PRO GLY TYR LEU GLU THR MET GLN SEQRES 31 A 459 SER SER LEU GLU GLN LEU TYR SER LYS TYR ASP GLU MET SEQRES 32 A 459 SER ILE LEU PHE THR VAL LEU VAL THR GLU THR THR LEU SEQRES 33 A 459 GLU ASN GLY LEU ILE HIS LEU ARG SER ARG ASP THR THR SEQRES 34 A 459 MET LYS GLU MET MET HIS ILE SER LYS LEU LYS ASP PHE SEQRES 35 A 459 LEU ILE LYS TYR ILE SER SER ALA LYS ASN VAL HIS HIS SEQRES 36 A 459 HIS HIS HIS HIS SEQRES 1 B 459 MET ARG SER ARG VAL ALA VAL ARG ALA CYS HIS LYS VAL SEQRES 2 B 459 CYS ARG CYS LEU LEU SER GLY PHE GLY GLY ARG VAL ASP SEQRES 3 B 459 ALA GLY GLN PRO GLU LEU LEU THR GLU ARG SER SER PRO SEQRES 4 B 459 LYS GLY GLY HIS VAL LYS SER HIS ALA GLU LEU GLU GLY SEQRES 5 B 459 ASN GLY GLU HIS PRO GLU ALA PRO GLY SER GLY GLU GLY SEQRES 6 B 459 SER GLU ALA LEU LEU GLU ILE CYS GLN ARG ARG HIS PHE SEQRES 7 B 459 LEU SER GLY SER LYS GLN GLN LEU SER ARG ASP SER LEU SEQRES 8 B 459 LEU SER GLY CYS HIS PRO GLY PHE GLY PRO LEU GLY VAL SEQRES 9 B 459 GLU LEU ARG LYS ASN LEU ALA ALA GLU TRP TRP THR SER SEQRES 10 B 459 VAL VAL VAL PHE ARG GLU GLN VAL PHE PRO VAL ASP ALA SEQRES 11 B 459 LEU HIS HIS LYS PRO GLY PRO LEU LEU PRO GLY ASP SER SEQRES 12 B 459 ALA PHE ARG GLY GLY LEU ARG GLU ASN LEU LEU HIS GLY SEQRES 13 B 459 ALA LEU GLU HIS TYR VAL ASN CYS LEU ASP LEU VAL ASN SEQRES 14 B 459 LYS ARG LEU PRO TYR GLY LEU ALA GLN ILE GLY VAL CYS SEQRES 15 B 459 PHE HIS PRO VAL PHE ASP THR LYS GLN ILE ARG ASN GLY SEQRES 16 B 459 VAL LYS SER ILE GLY GLU LYS THR GLU ALA SER LEU VAL SEQRES 17 B 459 TRP PHE THR PRO PRO ARG THR SER ASN GLN TRP LEU ASP SEQRES 18 B 459 PHE TRP LEU ARG HIS ARG LEU GLN TRP TRP ARG LYS PHE SEQRES 19 B 459 ALA MET SER PRO SER ASN PHE SER SER SER ASP CYS GLN SEQRES 20 B 459 ASP GLU GLU GLY ARG LYS GLY ASN LYS LEU TYR TYR ASN SEQRES 21 B 459 PHE PRO TRP GLY LYS GLU LEU ILE GLU THR LEU TRP ASN SEQRES 22 B 459 LEU GLY ASP HIS GLU LEU LEU HIS MET TYR PRO GLY ASN SEQRES 23 B 459 VAL SER LYS LEU HIS GLY ARG ASP GLY ARG LYS ASN VAL SEQRES 24 B 459 VAL PRO CYS VAL LEU SER VAL ASN GLY ASP LEU ASP ARG SEQRES 25 B 459 GLY MET LEU ALA TYR LEU TYR ASP SER PHE GLN LEU THR SEQRES 26 B 459 GLU ASN SER PHE THR ARG LYS LYS ASN LEU HIS ARG LYS SEQRES 27 B 459 VAL LEU LYS LEU HIS PRO CYS LEU ALA PRO ILE LYS VAL SEQRES 28 B 459 ALA LEU ASP VAL GLY ARG GLY PRO THR LEU GLU LEU ARG SEQRES 29 B 459 GLN VAL CYS GLN GLY LEU PHE ASN GLU LEU LEU GLU ASN SEQRES 30 B 459 GLY ILE SER VAL TRP PRO GLY TYR LEU GLU THR MET GLN SEQRES 31 B 459 SER SER LEU GLU GLN LEU TYR SER LYS TYR ASP GLU MET SEQRES 32 B 459 SER ILE LEU PHE THR VAL LEU VAL THR GLU THR THR LEU SEQRES 33 B 459 GLU ASN GLY LEU ILE HIS LEU ARG SER ARG ASP THR THR SEQRES 34 B 459 MET LYS GLU MET MET HIS ILE SER LYS LEU LYS ASP PHE SEQRES 35 B 459 LEU ILE LYS TYR ILE SER SER ALA LYS ASN VAL HIS HIS SEQRES 36 B 459 HIS HIS HIS HIS HELIX 1 1 ALA A 68 ARG A 76 1 9 HELIX 2 2 SER A 87 SER A 93 1 7 HELIX 3 3 GLY A 100 VAL A 119 1 20 HELIX 4 4 LEU A 185 TYR A 193 1 9 HELIX 5 5 LEU A 197 ASN A 201 5 5 HELIX 6 6 PRO A 244 ARG A 246 5 3 HELIX 7 7 THR A 247 ALA A 267 1 21 HELIX 8 8 SER A 269 SER A 271 5 3 HELIX 9 9 ASP A 308 TYR A 315 1 8 HELIX 10 10 LEU A 342 ASP A 352 1 11 HELIX 11 11 GLU A 394 ASN A 409 1 16 HELIX 12 12 PRO A 415 GLU A 419 5 5 HELIX 13 13 LEU A 425 ASP A 433 1 9 HELIX 14 14 GLU A 434 SER A 436 5 3 HELIX 15 15 SER A 469 VAL A 485 1 17 HELIX 16 16 GLU B 67 ARG B 76 1 10 HELIX 17 17 SER B 87 SER B 93 1 7 HELIX 18 18 GLY B 100 THR B 116 1 17 HELIX 19 19 LEU B 185 GLU B 191 1 7 HELIX 20 20 HIS B 192 TYR B 193 5 2 HELIX 21 21 VAL B 194 ASP B 198 5 5 HELIX 22 22 THR B 247 LYS B 265 1 19 HELIX 23 23 SER B 269 SER B 271 5 3 HELIX 24 24 ASP B 308 TYR B 315 1 8 HELIX 25 25 VAL B 319 HIS B 323 5 5 HELIX 26 26 LEU B 342 ASP B 352 1 11 HELIX 27 27 GLN B 397 GLY B 401 5 5 HELIX 28 28 LEU B 402 ASN B 409 1 8 HELIX 29 29 PRO B 415 GLU B 419 5 5 HELIX 30 30 LEU B 425 SER B 436 1 12 HELIX 31 31 THR B 444 GLU B 449 1 6 HELIX 32 32 HIS B 467 SER B 469 5 3 HELIX 33 33 LYS B 470 LYS B 483 1 14 SHEET 1 A 7 PHE A 126 PRO A 127 0 SHEET 2 A 7 TYR A 206 PHE A 215 1 O ALA A 209 N PHE A 126 SHEET 3 A 7 GLU A 233 THR A 243 -1 O LYS A 234 N CYS A 214 SHEET 4 A 7 CYS A 334 ASP A 341 -1 O GLY A 340 N ALA A 237 SHEET 5 A 7 LYS A 297 ASN A 305 -1 N THR A 302 O ASN A 339 SHEET 6 A 7 GLY A 286 ASN A 292 -1 N ASN A 287 O LEU A 303 SHEET 7 A 7 PHE A 273 CYS A 278 -1 N SER A 274 O TYR A 290 SHEET 1 B 5 VAL A 413 TRP A 414 0 SHEET 2 B 5 VAL A 383 VAL A 387 1 N VAL A 383 O TRP A 414 SHEET 3 B 5 PHE A 439 VAL A 443 1 O VAL A 441 N ALA A 384 SHEET 4 B 5 LEU A 452 SER A 457 -1 O HIS A 454 N LEU A 442 SHEET 5 B 5 MET A 466 HIS A 467 -1 O MET A 466 N ILE A 453 SHEET 1 C 7 VAL B 125 PRO B 127 0 SHEET 2 C 7 TYR B 206 PRO B 217 1 O GLY B 207 N PHE B 126 SHEET 3 C 7 ILE B 231 THR B 243 -1 O GLY B 232 N HIS B 216 SHEET 4 C 7 CYS B 334 ASP B 341 -1 O VAL B 338 N LEU B 239 SHEET 5 C 7 GLY B 296 ASN B 305 -1 N THR B 302 O ASN B 339 SHEET 6 C 7 GLY B 286 PHE B 293 -1 N ASN B 287 O LEU B 303 SHEET 7 C 7 PHE B 273 CYS B 278 -1 N SER B 274 O TYR B 290 SHEET 1 D 5 VAL B 413 TRP B 414 0 SHEET 2 D 5 VAL B 383 VAL B 387 1 N VAL B 383 O TRP B 414 SHEET 3 D 5 PHE B 439 VAL B 443 1 O PHE B 439 N ALA B 384 SHEET 4 D 5 HIS B 454 ARG B 456 -1 O HIS B 454 N LEU B 442 SHEET 5 D 5 LYS B 463 GLU B 464 -1 O GLU B 464 N LEU B 455 CISPEP 1 LEU A 204 PRO A 205 0 -0.11 CISPEP 2 LEU B 204 PRO B 205 0 -0.67 CRYST1 64.430 64.430 260.704 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015521 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003836 0.00000 MASTER 513 0 0 33 24 0 0 6 0 0 0 72 END