HEADER TRANSCRIPTION 23-JUN-09 3HZF TITLE STRUCTURE OF TR-ALFA BOUND TO SELECTIVE THYROMIMETIC GC-1 IN C2 SPACE TITLE 2 GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID HORMONE RECEPTOR, ALPHA ISOFORM 1 VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 135-397; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, DNA-BINDING, METAL-BINDING, KEYWDS 2 NUCLEUS, RECEPTOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC- KEYWDS 3 FINGER EXPDTA X-RAY DIFFRACTION AUTHOR R.APARICIO,L.BLEICHER,I.POLIKARPOV REVDAT 3 13-JUL-11 3HZF 1 VERSN REVDAT 2 28-JUL-09 3HZF 1 JRNL REVDAT 1 21-JUL-09 3HZF 0 JRNL AUTH L.BLEICHER,R.APARICIO,F.M.NUNES,L.MARTINEZ,S.M.GOMES DIAS, JRNL AUTH 2 A.C.FIGUEIRA,M.A.SANTOS,W.H.VENTURELLI,R.DA SILVA, JRNL AUTH 3 P.M.DONATE,F.A.NEVES,L.A.SIMEONI,J.D.BAXTER,P.WEBB,M.S.SKAF, JRNL AUTH 4 I.POLIKARPOV JRNL TITL STRUCTURAL BASIS OF GC-1 SELECTIVITY FOR THYROID HORMONE JRNL TITL 2 RECEPTOR ISOFORMS. JRNL REF BMC STRUCT.BIOL. V. 8 8 2008 JRNL REFN ESSN 1472-6807 JRNL PMID 18237438 JRNL DOI 10.1186/1472-6807-8-8 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 9092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 603 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.79000 REMARK 3 B22 (A**2) : -2.55000 REMARK 3 B33 (A**2) : -1.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.576 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2188 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2958 ; 1.813 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 6.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1632 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1097 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 75 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1317 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2138 ; 1.448 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 871 ; 2.438 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 820 ; 3.864 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3285 -29.5671 21.3871 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.2071 REMARK 3 T33: 0.2504 T12: -0.0636 REMARK 3 T13: 0.0465 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 15.6367 L22: 10.3339 REMARK 3 L33: 36.3412 L12: -0.4138 REMARK 3 L13: -9.5112 L23: -3.6350 REMARK 3 S TENSOR REMARK 3 S11: 0.2546 S12: 0.7807 S13: -0.0944 REMARK 3 S21: -0.4338 S22: -0.3527 S23: -0.5088 REMARK 3 S31: -1.8084 S32: 0.0664 S33: 0.0981 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8638 1.4126 9.9598 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.1169 REMARK 3 T33: 0.1002 T12: 0.0325 REMARK 3 T13: 0.0029 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.8224 L22: 2.9680 REMARK 3 L33: 2.6360 L12: 0.5042 REMARK 3 L13: -0.4737 L23: -0.9782 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0648 S13: 0.0078 REMARK 3 S21: -0.0045 S22: 0.0111 S23: 0.0957 REMARK 3 S31: -0.0388 S32: -0.1295 S33: -0.0172 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1902 9.1492 6.1605 REMARK 3 T TENSOR REMARK 3 T11: 0.1920 T22: 0.2185 REMARK 3 T33: 0.3497 T12: -0.0359 REMARK 3 T13: -0.0484 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 7.6218 L22: -14.8310 REMARK 3 L33: 30.1781 L12: -26.4051 REMARK 3 L13: 10.2200 L23: 33.3419 REMARK 3 S TENSOR REMARK 3 S11: 1.6561 S12: -0.0957 S13: -1.6179 REMARK 3 S21: 0.7234 S22: -2.1884 S23: -0.3902 REMARK 3 S31: -2.7180 S32: -1.4257 S33: 0.5322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC CONFOCAL MAX-FLUX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : 0.36600 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1BSX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM ACETATE, 100MM SODIUM REMARK 280 CACODYLATE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.89950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.38850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.89950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.38850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 142 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 GLN A 408 REMARK 465 GLU A 409 REMARK 465 VAL A 410 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 155 CB CG CD OE1 NE2 REMARK 480 GLN A 187 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD GLN A 155 N GLN A 156 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 155 CA GLN A 155 CB -0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 155 C - N - CA ANGL. DEV. = -36.5 DEGREES REMARK 500 ASP A 206 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 211 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 155 -165.67 -121.73 REMARK 500 ALA A 180 71.42 33.72 REMARK 500 GLN A 181 -77.98 -55.80 REMARK 500 SER A 183 154.66 -48.70 REMARK 500 HIS A 184 -79.32 -16.03 REMARK 500 GLN A 187 6.56 -62.38 REMARK 500 SER A 199 57.46 -113.89 REMARK 500 ILE A 201 -22.69 -146.05 REMARK 500 LYS A 209 157.31 -47.72 REMARK 500 GLU A 279 -43.06 -131.36 REMARK 500 ASN A 310 55.94 34.95 REMARK 500 MET A 325 52.24 -91.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 180 GLN A 181 -147.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 155 18.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B72 A 1 DBREF 3HZF A 148 410 UNP Q59FW3 Q59FW3_HUMAN 135 397 SEQADV 3HZF ALA A 142 UNP Q59FW3 EXPRESSION TAG SEQADV 3HZF ARG A 143 UNP Q59FW3 EXPRESSION TAG SEQADV 3HZF GLY A 144 UNP Q59FW3 EXPRESSION TAG SEQADV 3HZF SER A 145 UNP Q59FW3 EXPRESSION TAG SEQADV 3HZF HIS A 146 UNP Q59FW3 EXPRESSION TAG SEQADV 3HZF MET A 147 UNP Q59FW3 EXPRESSION TAG SEQRES 1 A 269 ALA ARG GLY SER HIS MET GLU GLU MET ILE ARG SER LEU SEQRES 2 A 269 GLN GLN ARG PRO GLU PRO THR PRO GLU GLU TRP ASP LEU SEQRES 3 A 269 ILE HIS ILE ALA THR GLU ALA HIS ARG SER THR ASN ALA SEQRES 4 A 269 GLN GLY SER HIS TRP LYS GLN ARG ARG LYS PHE LEU PRO SEQRES 5 A 269 ASP ASP ILE GLY GLN SER PRO ILE VAL SER MET PRO ASP SEQRES 6 A 269 GLY ASP LYS VAL ASP LEU GLU ALA PHE SER GLU PHE THR SEQRES 7 A 269 LYS ILE ILE THR PRO ALA ILE THR ARG VAL VAL ASP PHE SEQRES 8 A 269 ALA LYS LYS LEU PRO MET PHE SER GLU LEU PRO CAS GLU SEQRES 9 A 269 ASP GLN ILE ILE LEU LEU LYS GLY CYS CYS MET GLU ILE SEQRES 10 A 269 MET SER LEU ARG ALA ALA VAL ARG TYR ASP PRO GLU SER SEQRES 11 A 269 ASP THR LEU THR LEU SER GLY GLU MET ALA VAL LYS ARG SEQRES 12 A 269 GLU GLN LEU LYS ASN GLY GLY LEU GLY VAL VAL SER ASP SEQRES 13 A 269 ALA ILE PHE GLU LEU GLY LYS SER LEU SER ALA PHE ASN SEQRES 14 A 269 LEU ASP ASP THR GLU VAL ALA LEU LEU GLN ALA VAL LEU SEQRES 15 A 269 LEU MET SER THR ASP ARG SER GLY LEU LEU CAS VAL ASP SEQRES 16 A 269 LYS ILE GLU LYS SER GLN GLU ALA TYR LEU LEU ALA PHE SEQRES 17 A 269 GLU HIS TYR VAL ASN HIS ARG LYS HIS ASN ILE PRO HIS SEQRES 18 A 269 PHE TRP PRO LYS LEU LEU MET LYS VAL THR ASP LEU ARG SEQRES 19 A 269 MET ILE GLY ALA CAS HIS ALA SER ARG PHE LEU HIS MET SEQRES 20 A 269 LYS VAL GLU CAS PRO THR GLU LEU PHE PRO PRO LEU PHE SEQRES 21 A 269 LEU GLU VAL PHE GLU ASP GLN GLU VAL MODRES 3HZF CAS A 244 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3HZF CAS A 334 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3HZF CAS A 380 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3HZF CAS A 392 CYS S-(DIMETHYLARSENIC)CYSTEINE HET CAS A 244 9 HET CAS A 334 9 HET CAS A 380 9 HET CAS A 392 9 HET B72 A 1 24 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM B72 {4-[4-HYDROXY-3-(1-METHYLETHYL)BENZYL]-3,5- HETNAM 2 B72 DIMETHYLPHENOXY}ACETIC ACID FORMUL 1 CAS 4(C5 H12 AS N O2 S) FORMUL 2 B72 C20 H24 O4 FORMUL 3 HOH *19(H2 O) HELIX 1 1 SER A 145 SER A 153 1 9 HELIX 2 2 THR A 161 SER A 177 1 17 HELIX 3 3 ASP A 211 LYS A 235 1 25 HELIX 4 4 LEU A 236 GLU A 241 1 6 HELIX 5 5 PRO A 243 VAL A 265 1 23 HELIX 6 6 ARG A 284 GLY A 290 1 7 HELIX 7 7 GLY A 293 SER A 307 1 15 HELIX 8 8 ALA A 308 ASN A 310 5 3 HELIX 9 9 ASP A 312 MET A 325 1 14 HELIX 10 10 CAS A 334 LYS A 357 1 24 HELIX 11 11 HIS A 362 CAS A 392 1 31 HELIX 12 12 PRO A 393 PHE A 397 5 5 HELIX 13 13 PRO A 398 GLU A 406 1 9 SHEET 1 A 2 THR A 273 LEU A 276 0 SHEET 2 A 2 MET A 280 LYS A 283 -1 O MET A 280 N LEU A 276 LINK C PRO A 243 N CAS A 244 1555 1555 1.32 LINK C CAS A 244 N GLU A 245 1555 1555 1.35 LINK C LEU A 333 N CAS A 334 1555 1555 1.33 LINK C CAS A 334 N VAL A 335 1555 1555 1.33 LINK C ALA A 379 N CAS A 380 1555 1555 1.33 LINK C CAS A 380 N HIS A 381 1555 1555 1.33 LINK C GLU A 391 N CAS A 392 1555 1555 1.33 LINK C CAS A 392 N PRO A 393 1555 1555 1.33 SITE 1 AC1 12 ILE A 222 ALA A 225 ARG A 228 MET A 256 SITE 2 AC1 12 MET A 259 LEU A 276 SER A 277 GLY A 290 SITE 3 AC1 12 GLY A 291 LEU A 292 HIS A 381 PHE A 401 CRYST1 89.799 78.777 43.071 90.00 95.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011136 0.000000 0.001008 0.00000 SCALE2 0.000000 0.012694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023312 0.00000 MASTER 418 0 5 13 2 0 3 6 0 0 0 21 END