HEADER OXIDOREDUCTASE 22-JUN-09 3HY2 TITLE CRYSTAL STRUCTURE OF SULFIREDOXIN IN COMPLEX WITH PEROXIREDOXIN I AND TITLE 2 ATP:MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THIOREDOXIN PEROXIDASE 2, THIOREDOXIN-DEPENDENT PEROXIDE COMPND 5 REDUCTASE 2, PROLIFERATION-ASSOCIATED GENE PROTEIN, PAG, NATURAL COMPND 6 KILLER CELL-ENHANCING FACTOR A, NKEF-A; COMPND 7 EC: 1.11.1.15; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SULFIREDOXIN-1; COMPND 12 CHAIN: X, Y; COMPND 13 FRAGMENT: UNP RESIDUES 32 TO 137; COMPND 14 EC: 1.8.98.2; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRDX1, PAGA, PAGB, TDPX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: C20ORF139, SRX, SRXN1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PROTEIN COMPLEX, REDOX BIOLOGY, PROTEIN REPAIR, SULFUR KEYWDS 2 CHEMISTRY, ANTIOXIDANT, DISULFIDE BOND, OXIDOREDUCTASE, PEROXIDASE, KEYWDS 3 PHOSPHOPROTEIN, REDOX-ACTIVE CENTER, ATP-BINDING, MAGNESIUM, KEYWDS 4 NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.J.JONSSON,L.C.JOHNSON,W.T.LOWTHER REVDAT 5 13-OCT-21 3HY2 1 REMARK SEQADV LINK REVDAT 4 18-SEP-13 3HY2 1 REMARK VERSN REVDAT 3 08-DEC-09 3HY2 1 JRNL REVDAT 2 20-OCT-09 3HY2 1 JRNL REVDAT 1 06-OCT-09 3HY2 0 JRNL AUTH T.J.JONSSON,L.C.JOHNSON,W.T.LOWTHER JRNL TITL PROTEIN ENGINEERING OF THE QUATERNARY JRNL TITL 2 SULFIREDOXIN-PEROXIREDOXIN ENZYME-SUBSTRATE COMPLEX REVEALS JRNL TITL 3 THE MOLECULAR BASIS FOR CYSTEINE SULFINIC ACID JRNL TITL 4 PHOSPHORYLATION JRNL REF J.BIOL.CHEM. V. 284 33305 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19812042 JRNL DOI 10.1074/JBC.M109.036400 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4634 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6321 ; 1.473 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 6.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;34.431 ;24.229 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 735 ;15.217 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3538 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2006 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3120 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 353 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2930 ; 0.883 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4636 ; 1.439 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1944 ; 2.196 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1685 ; 3.370 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7-9.5% PEG 6000, 100 MM HEPES PH 7.6, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.66500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF PEROXIREDOXIN REMARK 300 MOLECULE IS A DECAMER I.E. FIVE DIMERS THAT FORM A RING OR DONUT- REMARK 300 LIKE STRUCTURE. THIS STRUCTURE, HOWEVER, IS AN ENGINEERED DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 188 REMARK 465 GLN A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 GLU A 193 REMARK 465 TYR A 194 REMARK 465 PHE A 195 REMARK 465 SER A 196 REMARK 465 LYS A 197 REMARK 465 GLN A 198 REMARK 465 LYS A 199 REMARK 465 GLY A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 187 REMARK 465 VAL B 188 REMARK 465 GLN B 189 REMARK 465 LYS B 190 REMARK 465 SER B 191 REMARK 465 LYS B 192 REMARK 465 GLU B 193 REMARK 465 TYR B 194 REMARK 465 PHE B 195 REMARK 465 SER B 196 REMARK 465 LYS B 197 REMARK 465 GLN B 198 REMARK 465 LYS B 199 REMARK 465 GLY B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 GLY X 28 REMARK 465 HIS X 29 REMARK 465 PRO X 30 REMARK 465 MET X 31 REMARK 465 SER X 32 REMARK 465 ILE X 33 REMARK 465 HIS X 34 REMARK 465 SER X 35 REMARK 465 GLY X 36 REMARK 465 GLY Y 28 REMARK 465 HIS Y 29 REMARK 465 PRO Y 30 REMARK 465 MET Y 31 REMARK 465 SER Y 32 REMARK 465 ILE Y 33 REMARK 465 HIS Y 34 REMARK 465 SER Y 35 REMARK 465 GLY Y 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA Y 39 NZ LYS Y 116 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 39 -72.11 -40.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 245 O REMARK 620 2 HOH A 248 O 105.0 REMARK 620 3 ATP X 1 O1G 85.6 167.0 REMARK 620 4 ATP X 1 O2B 164.0 90.0 78.8 REMARK 620 5 ATP X 1 O1A 93.7 98.0 88.6 89.7 REMARK 620 6 HOH X 140 O 90.3 84.9 87.6 85.3 174.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 275 O REMARK 620 2 HOH B 282 O 95.4 REMARK 620 3 ATP Y 2 O1G 94.2 169.7 REMARK 620 4 ATP Y 2 O2B 175.9 86.2 84.5 REMARK 620 5 ATP Y 2 O1A 91.0 92.0 91.7 85.3 REMARK 620 6 HOH Y 138 O 96.0 84.2 90.9 87.8 172.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP X 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP Y 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XW4 RELATED DB: PDB REMARK 900 RELATED ID: 1XW3 RELATED DB: PDB REMARK 900 RELATED ID: 3CYI RELATED DB: PDB REMARK 900 RELATED ID: 2RII RELATED DB: PDB DBREF 3HY2 A 1 199 UNP Q06830 PRDX1_HUMAN 1 199 DBREF 3HY2 B 1 199 UNP Q06830 PRDX1_HUMAN 1 199 DBREF 3HY2 X 32 137 UNP Q9BYN0 SRXN1_HUMAN 32 137 DBREF 3HY2 Y 32 137 UNP Q9BYN0 SRXN1_HUMAN 32 137 SEQADV 3HY2 ASP A 52 UNP Q06830 CYS 52 ENGINEERED MUTATION SEQADV 3HY2 SER A 71 UNP Q06830 CYS 71 ENGINEERED MUTATION SEQADV 3HY2 GLU A 83 UNP Q06830 CYS 83 ENGINEERED MUTATION SEQADV 3HY2 GLU A 86 UNP Q06830 ALA 86 ENGINEERED MUTATION SEQADV 3HY2 SER A 173 UNP Q06830 CYS 173 ENGINEERED MUTATION SEQADV 3HY2 CYS A 185 UNP Q06830 LYS 185 ENGINEERED MUTATION SEQADV 3HY2 GLY A 200 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 201 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 202 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 203 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 204 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 205 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 206 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 ASP B 52 UNP Q06830 CYS 52 ENGINEERED MUTATION SEQADV 3HY2 SER B 71 UNP Q06830 CYS 71 ENGINEERED MUTATION SEQADV 3HY2 GLU B 83 UNP Q06830 CYS 83 ENGINEERED MUTATION SEQADV 3HY2 GLU B 86 UNP Q06830 ALA 86 ENGINEERED MUTATION SEQADV 3HY2 SER B 173 UNP Q06830 CYS 173 ENGINEERED MUTATION SEQADV 3HY2 CYS B 185 UNP Q06830 LYS 185 ENGINEERED MUTATION SEQADV 3HY2 GLY B 200 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 201 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 202 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 203 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 204 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 205 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 206 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 GLY X 28 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 HIS X 29 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 PRO X 30 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 MET X 31 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 CYS X 43 UNP Q9BYN0 ASN 43 ENGINEERED MUTATION SEQADV 3HY2 ALA X 99 UNP Q9BYN0 CYS 99 ENGINEERED MUTATION SEQADV 3HY2 GLY Y 28 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 HIS Y 29 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 PRO Y 30 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 MET Y 31 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 CYS Y 43 UNP Q9BYN0 ASN 43 ENGINEERED MUTATION SEQADV 3HY2 ALA Y 99 UNP Q9BYN0 CYS 99 ENGINEERED MUTATION SEQRES 1 A 206 MET SER SER GLY ASN ALA LYS ILE GLY HIS PRO ALA PRO SEQRES 2 A 206 ASN PHE LYS ALA THR ALA VAL MET PRO ASP GLY GLN PHE SEQRES 3 A 206 LYS ASP ILE SER LEU SER ASP TYR LYS GLY LYS TYR VAL SEQRES 4 A 206 VAL PHE PHE PHE TYR PRO LEU ASP PHE THR PHE VAL ASP SEQRES 5 A 206 PRO THR GLU ILE ILE ALA PHE SER ASP ARG ALA GLU GLU SEQRES 6 A 206 PHE LYS LYS LEU ASN SER GLN VAL ILE GLY ALA SER VAL SEQRES 7 A 206 ASP SER HIS PHE GLU HIS LEU GLU TRP VAL ASN THR PRO SEQRES 8 A 206 LYS LYS GLN GLY GLY LEU GLY PRO MET ASN ILE PRO LEU SEQRES 9 A 206 VAL SER ASP PRO LYS ARG THR ILE ALA GLN ASP TYR GLY SEQRES 10 A 206 VAL LEU LYS ALA ASP GLU GLY ILE SER PHE ARG GLY LEU SEQRES 11 A 206 PHE ILE ILE ASP ASP LYS GLY ILE LEU ARG GLN ILE THR SEQRES 12 A 206 VAL ASN ASP LEU PRO VAL GLY ARG SER VAL ASP GLU THR SEQRES 13 A 206 LEU ARG LEU VAL GLN ALA PHE GLN PHE THR ASP LYS HIS SEQRES 14 A 206 GLY GLU VAL SER PRO ALA GLY TRP LYS PRO GLY SER ASP SEQRES 15 A 206 THR ILE CYS PRO ASP VAL GLN LYS SER LYS GLU TYR PHE SEQRES 16 A 206 SER LYS GLN LYS GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 206 MET SER SER GLY ASN ALA LYS ILE GLY HIS PRO ALA PRO SEQRES 2 B 206 ASN PHE LYS ALA THR ALA VAL MET PRO ASP GLY GLN PHE SEQRES 3 B 206 LYS ASP ILE SER LEU SER ASP TYR LYS GLY LYS TYR VAL SEQRES 4 B 206 VAL PHE PHE PHE TYR PRO LEU ASP PHE THR PHE VAL ASP SEQRES 5 B 206 PRO THR GLU ILE ILE ALA PHE SER ASP ARG ALA GLU GLU SEQRES 6 B 206 PHE LYS LYS LEU ASN SER GLN VAL ILE GLY ALA SER VAL SEQRES 7 B 206 ASP SER HIS PHE GLU HIS LEU GLU TRP VAL ASN THR PRO SEQRES 8 B 206 LYS LYS GLN GLY GLY LEU GLY PRO MET ASN ILE PRO LEU SEQRES 9 B 206 VAL SER ASP PRO LYS ARG THR ILE ALA GLN ASP TYR GLY SEQRES 10 B 206 VAL LEU LYS ALA ASP GLU GLY ILE SER PHE ARG GLY LEU SEQRES 11 B 206 PHE ILE ILE ASP ASP LYS GLY ILE LEU ARG GLN ILE THR SEQRES 12 B 206 VAL ASN ASP LEU PRO VAL GLY ARG SER VAL ASP GLU THR SEQRES 13 B 206 LEU ARG LEU VAL GLN ALA PHE GLN PHE THR ASP LYS HIS SEQRES 14 B 206 GLY GLU VAL SER PRO ALA GLY TRP LYS PRO GLY SER ASP SEQRES 15 B 206 THR ILE CYS PRO ASP VAL GLN LYS SER LYS GLU TYR PHE SEQRES 16 B 206 SER LYS GLN LYS GLY HIS HIS HIS HIS HIS HIS SEQRES 1 X 110 GLY HIS PRO MET SER ILE HIS SER GLY ARG ILE ALA ALA SEQRES 2 X 110 VAL HIS CYS VAL PRO LEU SER VAL LEU ILE ARG PRO LEU SEQRES 3 X 110 PRO SER VAL LEU ASP PRO ALA LYS VAL GLN SER LEU VAL SEQRES 4 X 110 ASP THR ILE ARG GLU ASP PRO ASP SER VAL PRO PRO ILE SEQRES 5 X 110 ASP VAL LEU TRP ILE LYS GLY ALA GLN GLY GLY ASP TYR SEQRES 6 X 110 PHE TYR SER PHE GLY GLY ALA HIS ARG TYR ALA ALA TYR SEQRES 7 X 110 GLN GLN LEU GLN ARG GLU THR ILE PRO ALA LYS LEU VAL SEQRES 8 X 110 GLN SER THR LEU SER ASP LEU ARG VAL TYR LEU GLY ALA SEQRES 9 X 110 SER THR PRO ASP LEU GLN SEQRES 1 Y 110 GLY HIS PRO MET SER ILE HIS SER GLY ARG ILE ALA ALA SEQRES 2 Y 110 VAL HIS CYS VAL PRO LEU SER VAL LEU ILE ARG PRO LEU SEQRES 3 Y 110 PRO SER VAL LEU ASP PRO ALA LYS VAL GLN SER LEU VAL SEQRES 4 Y 110 ASP THR ILE ARG GLU ASP PRO ASP SER VAL PRO PRO ILE SEQRES 5 Y 110 ASP VAL LEU TRP ILE LYS GLY ALA GLN GLY GLY ASP TYR SEQRES 6 Y 110 PHE TYR SER PHE GLY GLY ALA HIS ARG TYR ALA ALA TYR SEQRES 7 Y 110 GLN GLN LEU GLN ARG GLU THR ILE PRO ALA LYS LEU VAL SEQRES 8 Y 110 GLN SER THR LEU SER ASP LEU ARG VAL TYR LEU GLY ALA SEQRES 9 Y 110 SER THR PRO ASP LEU GLN HET MG A 207 1 HET MG B 207 1 HET ATP X 1 31 HET ATP Y 2 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 5 MG 2(MG 2+) FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 9 HOH *321(H2 O) HELIX 1 1 SER A 32 LYS A 35 5 4 HELIX 2 2 PRO A 53 ARG A 62 1 10 HELIX 3 3 ARG A 62 LEU A 69 1 8 HELIX 4 4 SER A 80 ASN A 89 1 10 HELIX 5 5 PRO A 91 GLY A 95 5 5 HELIX 6 6 ARG A 110 TYR A 116 1 7 HELIX 7 7 SER A 152 HIS A 169 1 18 HELIX 8 8 GLY A 180 ILE A 184 5 5 HELIX 9 9 SER B 32 LYS B 35 5 4 HELIX 10 10 PRO B 53 ARG B 62 1 10 HELIX 11 11 ARG B 62 LYS B 68 1 7 HELIX 12 12 SER B 80 ASN B 89 1 10 HELIX 13 13 PRO B 91 GLY B 95 5 5 HELIX 14 14 ARG B 110 TYR B 116 1 7 HELIX 15 15 SER B 152 HIS B 169 1 18 HELIX 16 16 GLY B 180 ILE B 184 5 5 HELIX 17 17 ASP X 58 ASP X 72 1 15 HELIX 18 18 PRO X 73 VAL X 76 5 4 HELIX 19 19 GLY X 98 LEU X 108 1 11 HELIX 20 20 THR X 121 GLY X 130 1 10 HELIX 21 21 ALA X 131 THR X 133 5 3 HELIX 22 22 ASP Y 58 ASP Y 72 1 15 HELIX 23 23 PRO Y 73 VAL Y 76 5 4 HELIX 24 24 GLY Y 98 LEU Y 108 1 11 HELIX 25 25 THR Y 121 GLY Y 130 1 10 HELIX 26 26 ALA Y 131 THR Y 133 5 3 SHEET 1 A14 PHE A 26 SER A 30 0 SHEET 2 A14 LYS A 16 VAL A 20 -1 N ALA A 19 O LYS A 27 SHEET 3 A14 LEU A 104 SER A 106 -1 O LEU A 104 N VAL A 20 SHEET 4 A14 SER A 71 SER A 77 1 N GLY A 75 O VAL A 105 SHEET 5 A14 TYR A 38 PHE A 43 1 N VAL A 40 O ILE A 74 SHEET 6 A14 ARG A 128 ILE A 133 -1 O ILE A 133 N VAL A 39 SHEET 7 A14 LEU A 139 ASN A 145 -1 O THR A 143 N LEU A 130 SHEET 8 A14 LEU B 139 ASN B 145 -1 O VAL B 144 N ILE A 142 SHEET 9 A14 ARG B 128 ILE B 133 -1 N ILE B 132 O ARG B 140 SHEET 10 A14 TYR B 38 PHE B 43 -1 N PHE B 43 O GLY B 129 SHEET 11 A14 SER B 71 SER B 77 1 O ILE B 74 N VAL B 40 SHEET 12 A14 LEU B 104 SER B 106 1 O VAL B 105 N GLY B 75 SHEET 13 A14 LYS B 16 VAL B 20 -1 N VAL B 20 O LEU B 104 SHEET 14 A14 PHE B 26 SER B 30 -1 O LYS B 27 N ALA B 19 SHEET 1 B 2 LEU B 119 LYS B 120 0 SHEET 2 B 2 ILE B 125 SER B 126 -1 O ILE B 125 N LYS B 120 SHEET 1 C 5 HIS X 42 PRO X 45 0 SHEET 2 C 5 THR X 112 SER X 120 -1 O ALA X 115 N HIS X 42 SHEET 3 C 5 ILE X 79 LYS X 85 1 N VAL X 81 O VAL X 118 SHEET 4 C 5 ASP X 91 SER X 95 -1 O TYR X 92 N ILE X 84 SHEET 5 C 5 LEU X 49 ILE X 50 1 N ILE X 50 O PHE X 93 SHEET 1 D 5 HIS Y 42 PRO Y 45 0 SHEET 2 D 5 THR Y 112 SER Y 120 -1 O ALA Y 115 N HIS Y 42 SHEET 3 D 5 ILE Y 79 LYS Y 85 1 N VAL Y 81 O LYS Y 116 SHEET 4 D 5 ASP Y 91 SER Y 95 -1 O TYR Y 92 N ILE Y 84 SHEET 5 D 5 LEU Y 49 ILE Y 50 1 N ILE Y 50 O PHE Y 93 SSBOND 1 CYS A 185 CYS Y 43 1555 1555 2.08 SSBOND 2 CYS B 185 CYS X 43 1555 1555 2.05 LINK MG MG A 207 O HOH A 245 1555 1555 2.05 LINK MG MG A 207 O HOH A 248 1555 1555 2.05 LINK MG MG A 207 O1G ATP X 1 1555 1555 2.15 LINK MG MG A 207 O2B ATP X 1 1555 1555 2.19 LINK MG MG A 207 O1A ATP X 1 1555 1555 2.02 LINK MG MG A 207 O HOH X 140 1555 1555 2.21 LINK MG MG B 207 O HOH B 275 1555 1555 2.10 LINK MG MG B 207 O HOH B 282 1555 1555 2.06 LINK MG MG B 207 O1G ATP Y 2 1555 1555 2.08 LINK MG MG B 207 O2B ATP Y 2 1555 1555 2.20 LINK MG MG B 207 O1A ATP Y 2 1555 1555 2.04 LINK MG MG B 207 O HOH Y 138 1555 1555 2.15 SITE 1 AC1 20 ASP A 52 LYS A 93 MG A 207 HOH A 245 SITE 2 AC1 20 HOH A 248 HOH A 275 LYS X 61 SER X 64 SITE 3 AC1 20 LEU X 65 THR X 68 SER X 75 PRO X 77 SITE 4 AC1 20 GLY X 98 ALA X 99 HIS X 100 ARG X 101 SITE 5 AC1 20 HOH X 140 HOH X 176 HOH X 217 HOH X 318 SITE 1 AC2 21 ASP B 52 LYS B 93 MG B 207 HOH B 275 SITE 2 AC2 21 HOH B 282 HOH B 315 LYS Y 61 SER Y 64 SITE 3 AC2 21 LEU Y 65 THR Y 68 SER Y 75 PRO Y 77 SITE 4 AC2 21 GLY Y 98 ALA Y 99 HIS Y 100 ARG Y 101 SITE 5 AC2 21 HOH Y 138 HOH Y 207 HOH Y 242 HOH Y 254 SITE 6 AC2 21 HOH Y 293 SITE 1 AC3 5 ASP A 52 HOH A 245 HOH A 248 ATP X 1 SITE 2 AC3 5 HOH X 140 SITE 1 AC4 5 ASP B 52 HOH B 275 HOH B 282 ATP Y 2 SITE 2 AC4 5 HOH Y 138 CRYST1 57.330 92.410 131.850 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007584 0.00000 MASTER 387 0 4 26 26 0 15 6 0 0 0 50 END